CmaCh14G010110 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G010110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr14 : 5317101 .. 5318310 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTTAGTTCGATAAATTGAAAATTTAATGAATTGTTTTTTTATTTATTGAAATTTCTAGTATAGATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTACAATCTAAACATTGATTCTTTTTTTCGCTATTTTTTTTGAACCGTATGCATCAAAAGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGTTTTTTTTAGACAAAAAGGAAAAACTATGTCTTCGCCATAGAAAATATGAATATTAAGTAATAATAGCATGGCATTTTGAATTCGATATGAGAATTTTTTTTCTTGTTTTTTTATCTAAACCATTAGGTTATGTCTCGAAAGAGTAAATATGAGATAAAAGACATTTACGATTTTAGCTGATTTACCGGAGGCCTCTTTCAGCGTCACAAACTTTTTTGTTTTCAGACGTAAAACACTTAAGAACAATATTTCTATTATAAAAGACTACGGAACCATCATAATATTTATTTTTAAATTATTAATAAATAAAGGTTCTAGGTCTCATAGATCCTCCATTTTCTATATCTTCGATGGAAGGTAAAAACGAATTCCATTTTGGAGCCGTATGCACTGCACAAAGGATGCATATACGGTTGTTAATCCTATCATGCGAGATAGAGAAAACCATTTACTAAATCAACAGGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

mRNA sequence

ATGAAAAATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

Coding sequence (CDS)

ATGAAAAATAAACGACCGCGGGCCAAAGGACAAAACTCATCTTTCTTGAAAAATGGAAGGGAAGAAAAAGCCCCTTCATTAAAAGTTAGAAAGAGTCCTCTAAAGAAGGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCCGGAATAGCTATTTATAATACTATCCAATTTGTGAAACCATATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCAGCGCCAATGAGTGGACAAACGGGAGAATTGATCTTGGAAGCGGGAGAACTACTGACGGTGCGTGAAACCATCACAAAGGTTTATGGACAAAGAACAGGCAAACCCGGTCTATTTACAACTAGCCAGATAATCCTCTTTTCCTAA

Protein sequence

MKNKRPRAKGQNSSFLKNGREEKAPSLKVRKSPLKKGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNYQTSSIPSRSAPMSGQTGELILEAGELLTVRETITKVYGQRTGKPGLFTTSQIILFS

Homology

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BLAST of CmaCh14G010110 vs. Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.5e-46
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+ KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFLLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+TKVYGQRTGKP
Sbjct: 145 EELLKLRETLTKVYGQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.2e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSFILVGG   +  + P          S+    QTGE +LEA
Sbjct: 85  QFVRPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFVLEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RET+T+VY QRTGKP
Sbjct: 145 EELLKLRETLTRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. Swiss-Prot
Match: CLPP_EUCGG (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. globulus GN=clpP PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.4e-45
Identity = 95/141 (67.38%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           NRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIE++NKD YLFINSPGG VI G+AIY+T+
Sbjct: 25  NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIYDTM 84

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SRSAPMSGQTGELILEA 170
           QFV+P +HTICMGLAASMGSF+LVGG   +  + P          S+    QTGE ILEA
Sbjct: 85  QFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHARVMIHQPASSFYEAQTGEFILEA 144

Query: 171 GELLTVRETITKVYGQRTGKP 183
            ELL +RETIT+VY QRTGKP
Sbjct: 145 EELLKLRETITRVYVQRTGKP 165

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BLAST of CmaCh14G010110 vs. TrEMBL
Match: H6SXE0_9POAL (ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Potarophytum riparium GN=clpP PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.0e-47
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGAR V KGY F+LINRLYR+RLLFLGQ+V+SEISNQ++GLM+YLSIED  +D YLFINS
Sbjct: 28  KGARMVSKGYYFVLINRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDATRDLYLFINS 87

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV P +HTICMGLAASMGSFILVGG   +  + P          
Sbjct: 88  PGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPA 147

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    Q GE ILEA ELL +RET+TKVY QRTG P
Sbjct: 148 SSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNP 183

[Close]

BLAST of CmaCh14G010110 vs. TrEMBL
Match: A0A109RTB8_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Lespedeza capitata GN=clpP PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNLILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG V+ GIA+Y+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVLPGIAVYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+   GQTGE I+EA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEGQTGEFIVEAEELLKLRETITRVYMQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. TrEMBL
Match: A0A0K0LVR2_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Psoralidium tenuiflorum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. TrEMBL
Match: A0A0K0LVX8_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Pediomelum digitatum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. TrEMBL
Match: A0A0K0LX19_9FABA (ATP-dependent Clp protease proteolytic subunit OS=Pediomelum argophyllum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. TAIR10
Match: ATCG00670.1 (ATCG00670.1 plastid-encoded CLP P)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-42
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           + NRLYR+RL FLGQ+V++EISNQ+I LMIYLSIE + KD YLFINSPGG VI+G+AIY+
Sbjct: 23  IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYD 82

Query: 109 TIQFVKPYIHTICMGLAASMGSFILVGG---------NYQTSSIPSRSAPMSGQTGELIL 168
           T+QFV+P + TICMGLAAS+ SFILVGG         + +       S+    QTGE IL
Sbjct: 83  TMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFIL 142

Query: 169 EAGELLTVRETITKVYGQRTGKP 183
           EA ELL +RETIT+VY QRTGKP
Sbjct: 143 EAEELLKLRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. TAIR10
Match: AT1G12410.1 (AT1G12410.1 CLP protease proteolytic subunit 2)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-20
Identity = 46/140 (32.86%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           N LYR+R++F+GQ+++ E SNQI+  M+YL   D+++  Y+++N PGG +   +AIY+T+
Sbjct: 92  NALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTM 151

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGN--------YQTSSIPSRSAPMSGQTGELILEAG 170
           + +K  + T C+GLA ++  F+L  G             ++ S +    GQ  ++  EA 
Sbjct: 152 KSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAK 211

Query: 171 ELLTVRETITKVYGQRTGKP 183
           EL  +R+ +     + TG+P
Sbjct: 212 ELSRIRDYLFNELAKNTGQP 231

[Close]

BLAST of CmaCh14G010110 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 51  NRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYNTI 110
           N L RQR++FLG  V+   ++ +I  ++ L  ED  +D  LFINSPGG + AG+ IY+ +
Sbjct: 88  NMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAM 147

Query: 111 QFVKPYIHTICMGLAASMGSFILVGGNYQTSSIPSRSAPM--------SGQTGELILEAG 170
           +  K  + T+C+GLAASMG+F+L  G+         S  M         G+  E+ +   
Sbjct: 148 KQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIR 207

Query: 171 ELLTVRETITKVYGQRTGKP 183
           E++  +  + K++ + TGKP
Sbjct: 208 EMMYHKIKLNKIFSRITGKP 227

[Close]

BLAST of CmaCh14G010110 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-19
Identity = 45/142 (31.69%), Postives = 87/142 (61.27%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           + +RL ++R++ +   +  + S+ ++  ++YL  E+ +K  ++++NSPGG V AG+AIY+
Sbjct: 49  IFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYD 108

Query: 109 TIQFVKPYIHTICMGLAASMGSFIL-VGGNYQTSSIPSR-------SAPMSGQTGELILE 168
           T+Q+++  I TIC+G AASM S +L  G   Q  S+P+        S   SGQ  ++ + 
Sbjct: 109 TMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIH 168

Query: 169 AGELLTVRETITKVYGQRTGKP 183
             +++ V + + ++Y + TG+P
Sbjct: 169 TKQIVRVWDALNELYVKHTGQP 190

[Close]

BLAST of CmaCh14G010110 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 46/141 (32.62%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 49  LINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYN 108
           +I++L++ R++  G  V+ +++N I+  ++YL   D  KD  +++NSPGG V AG+AI++
Sbjct: 115 IISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFD 174

Query: 109 TIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIPSR----SAPMSGQTG---ELILE 168
           T++ ++P + T+C+GLAASMG+F+L  G   +  S+P+       P+ G  G   ++ ++
Sbjct: 175 TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQ 234

Query: 169 AGELLTVRETITKVYGQRTGK 182
           A E+L  +  +       TG+
Sbjct: 235 ANEMLHHKANLNGYLAYHTGQ 255

[Close]

BLAST of CmaCh14G010110 vs. NCBI nr
Match: gi|374411904|gb|AEZ48936.1| (clp protease proteolytic subunit, partial (plastid) [Potarophytum riparium])

HSP 1 Score: 195.3 bits (495), Expect = 1.0e-46
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGAR V KGY F+LINRLYR+RLLFLGQ+V+SEISNQ++GLM+YLSIED  +D YLFINS
Sbjct: 28  KGARMVSKGYYFVLINRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDATRDLYLFINS 87

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV P +HTICMGLAASMGSFILVGG   +  + P          
Sbjct: 88  PGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPA 147

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    Q GE ILEA ELL +RET+TKVY QRTG P
Sbjct: 148 SSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNP 183

[Close]

BLAST of CmaCh14G010110 vs. NCBI nr
Match: gi|984910861|gb|AMC30882.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Lespedeza capitata])

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-46
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNLILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG V+ GIA+Y+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVLPGIAVYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+   GQTGE I+EA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEGQTGEFIVEAEELLKLRETITRVYMQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. NCBI nr
Match: gi|748991897|gb|AJE72327.1| (ATP-dependent Clp protease proteolytic subunit (plastid) [Psoralidium tenuiflorum])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ++ LM+YLSIEDENKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLLSLMVYLSIEDENKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + TICMGLAASMGSF+L GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTICMGLAASMGSFLLAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRTGKP
Sbjct: 130 SSFYEAQTGEFILEAEELLKIRETITRVYVQRTGKP 165

[Close]

BLAST of CmaCh14G010110 vs. NCBI nr
Match: gi|944542108|ref|YP_009176028.1| (clp protease proteolytic subunit (chloroplast) [Ficus racemosa])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 104/160 (65.00%), Postives = 120/160 (75.00%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           K A TV KGYNFI INRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+ KD YLFINS
Sbjct: 76  KDACTVPKGYNFISINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINS 135

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP---------- 155
           PGG VI G+ IY+T+QFV+P + TICMGLAASMGSFILVGG   +  + P          
Sbjct: 136 PGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHAWRQIIRVM 195

Query: 156 ---SRSAPMSGQTGELILEAGELLTVRETITKVYGQRTGK 182
                S+    QTGE ILEA ELL +RETIT+VY QRTGK
Sbjct: 196 IHQPASSFYEAQTGEFILEAEELLKLRETITRVYAQRTGK 235

[Close]

BLAST of CmaCh14G010110 vs. NCBI nr
Match: gi|984910849|gb|AMC30876.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Desmodium illinoense])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 36  KGARTVLKGYNFILINRLYRQRLLFLGQDVESEISNQIIGLMIYLSIEDENKDQYLFINS 95
           KGA T LK  N ILINRLYR+RLLFLGQ+V+SEISNQ+IGLM+YLSIED+NKD YLFINS
Sbjct: 10  KGACTALKEKNGILINRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDDNKDLYLFINS 69

Query: 96  PGGGVIAGIAIYNTIQFVKPYIHTICMGLAASMGSFILVGGNY-QTSSIP--------SR 155
           PGG VI GIAIY+T+QFV+P + T+CMGLAASMGSFIL GG   +  + P          
Sbjct: 70  PGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFILAGGEITKRLAFPHARVMIHQPA 129

Query: 156 SAPMSGQTGELILEAGELLTVRETITKVYGQRTGKP 183
           S+    QTGE ILEA ELL +RETIT+VY QRT KP
Sbjct: 130 SSFYEAQTGEFILEAEELLKLRETITRVYVQRTSKP 165

The following BLAST results are available for this feature:

BLAST of CmaCh14G010110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP_SPIOL	8.5e-46	68.09	ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3...	[more]
CLPP_NICTO	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=c...	[more]
CLPP_TOBAC	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2...	[more]
CLPP_NICSY	7.2e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP P...	[more]
CLPP_EUCGG	9.4e-45	67.38	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. glo...	[more]

BLAST of CmaCh14G010110 vs. TrEMBL


Match Name	E-value	Identity	Description
H6SXE0_9POAL	7.0e-47	66.67	ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Potarophytum ripari...	[more]
A0A109RTB8_9FABA	1.6e-46	66.03	ATP-dependent Clp protease proteolytic subunit OS=Lespedeza capitata GN=clpP PE=...	[more]
A0A0K0LVR2_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Psoralidium tenuiflorum GN=clp...	[more]
A0A0K0LVX8_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Pediomelum digitatum GN=clpP P...	[more]
A0A0K0LX19_9FABA	1.0e-45	66.67	ATP-dependent Clp protease proteolytic subunit OS=Pediomelum argophyllum GN=clpP...	[more]

BLAST of CmaCh14G010110 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00670.1	7.9e-42	62.24	ATCG00670.1 plastid-encoded CLP P	[more]
AT1G12410.1	6.5e-20	32.86	CLP protease proteolytic subunit 2	[more]
AT1G66670.1	1.4e-19	35.00	CLP protease proteolytic subunit 3	[more]
AT5G23140.1	2.5e-19	31.69	nuclear-encoded CLP protease P7	[more]
AT1G02560.1	2.1e-18	32.62	nuclear encoded CLP protease 5	[more]

BLAST of CmaCh14G010110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|374411904\|gb\|AEZ48936.1\|	1.0e-46	66.67	clp protease proteolytic subunit, partial (plastid) [Potarophytum riparium]	[more]
gi\|984910861\|gb\|AMC30882.1\|	2.2e-46	66.03	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Lespedeza capitata...	[more]
gi\|748991897\|gb\|AJE72327.1\|	1.4e-45	66.67	ATP-dependent Clp protease proteolytic subunit (plastid) [Psoralidium tenuifloru...	[more]
gi\|944542108\|ref\|YP_009176028.1\|	2.5e-45	65.00	clp protease proteolytic subunit (chloroplast) [Ficus racemosa]	[more]
gi\|984910849\|gb\|AMC30876.1\|	2.5e-45	66.67	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Desmodium illinoen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR018215	ClpP_Ser_AS
IPR023562	ClpP/TepA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010110.1	CmaCh14G010110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 48..63 score: 1.2E-24coord: 88..108 score: 1.2E-24coord: 119..136 score: 1.2
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 119..130 scor
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 49..182 score: 9.0
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 49..182 score: 1.9
None	No IPR available	PANTHER	PTHR10381:SF19	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1	coord: 49..182 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G010110	Cucurbita pepo (Zucchini)	cmacpeB260
CmaCh14G010110	Cucurbita pepo (Zucchini)	cmacpeB269
CmaCh14G010110	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G010110	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G010110	Bottle gourd (USVL1VR-Ls)	cmalsiB232
CmaCh14G010110	Bottle gourd (USVL1VR-Ls)	cmalsiB240
CmaCh14G010110	Cucumber (Gy14) v2	cgybcmaB307
CmaCh14G010110	Cucumber (Gy14) v2	cgybcmaB911
CmaCh14G010110	Melon (DHL92) v3.6.1	cmamedB248
CmaCh14G010110	Melon (DHL92) v3.6.1	cmamedB257
CmaCh14G010110	Silver-seed gourd	carcmaB0496
CmaCh14G010110	Silver-seed gourd	carcmaB0624
CmaCh14G010110	Silver-seed gourd	carcmaB1057
CmaCh14G010110	Silver-seed gourd	carcmaB1132
CmaCh14G010110	Cucumber (Chinese Long) v3	cmacucB0280
CmaCh14G010110	Cucumber (Chinese Long) v3	cmacucB0317
CmaCh14G010110	Watermelon (97103) v2	cmawmbB248
CmaCh14G010110	Wax gourd	cmawgoB0289
CmaCh14G010110	Wax gourd	cmawgoB0362
CmaCh14G010110	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh14G010110	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh14G010110	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh14G010110	Cucumber (Gy14) v1	cgycmaB0567
CmaCh14G010110	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G010110	Cucurbita moschata (Rifu)	cmacmoB252
CmaCh14G010110	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G010110	Cucurbita moschata (Rifu)	cmacmoB276
CmaCh14G010110	Wild cucumber (PI 183967)	cmacpiB243
CmaCh14G010110	Wild cucumber (PI 183967)	cmacpiB276
CmaCh14G010110	Cucumber (Chinese Long) v2	cmacuB241
CmaCh14G010110	Cucumber (Chinese Long) v2	cmacuB272
CmaCh14G010110	Melon (DHL92) v3.5.1	cmameB219
CmaCh14G010110	Melon (DHL92) v3.5.1	cmameB226
CmaCh14G010110	Watermelon (Charleston Gray)	cmawcgB220
CmaCh14G010110	Watermelon (Charleston Gray)	cmawcgB221
CmaCh14G010110	Watermelon (97103) v1	cmawmB222
CmaCh14G010110	Watermelon (97103) v1	cmawmB226
CmaCh14G010110	Watermelon (97103) v1	cmawmB227