CmaCh13G010690.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G010690.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TCP family transcription factor
Location	Cma_Chr13 : 8093105 .. 8093779 (-)
Sequence length	675

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGAGAGTAAATAATATGATCTCAAAATTGAAGCAAGAGGGCGTTCATGTTGAAGCAAAACAAATGGAGGGCAAAAGGAAGAAGGGGCCTTCAAGGCAAGGGCCATTTCTTAGAGGCAATCCAAGAATTTTTAGAGTTTCTCCTTTGTTTGGAGGAAAAGACAGGCACAGCAAAGTTTGCACAATGAAGGGCTTAAGAGACAGAAGGATTAGGCTTTCAGCTCCCACTGCTATTCAACTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGACTGGCTGATGGATGTCACAAGATTTGATATTGATAAGCTCCCACCACTCCATTTTCCGAAAGATTTTGACCCAAATGCCTCGTTTCTTCATCATTTTGATATTGCAGATGCTGCAGCGAAGGCCAAACATGAAGAAACTGGGATGCTTTTGCTTCAGAAGTCGTCTCCTTCACCCAACCATGCTTCTTTTTCTGCTCTTCAGCTTCAAACCAACGCCATGACTGAAAACTGTTGCCATTTTGACCCTCCAAGCTTTCCATTCCCATTAATGGATCAGGCCAATCCAGCTTCATTTTCCTCACCTTCTGAGCAGTTGCTGTTCCGTCCATTGACGATGCCACCCGAAGTTTCTTCTTACCTTCCTAACGGTGGAAATTAA

mRNA sequence

ATGACAGGGAGAGTAAATAATATGATCTCAAAATTGAAGCAAGAGGGCGTTCATGTTGAAGCAAAACAAATGGAGGGCAAAAGGAAGAAGGGGCCTTCAAGGCAAGGGCCATTTCTTAGAGGCAATCCAAGAATTTTTAGAGTTTCTCCTTTGTTTGGAGGAAAAGACAGGCACAGCAAAGTTTGCACAATGAAGGGCTTAAGAGACAGAAGGATTAGGCTTTCAGCTCCCACTGCTATTCAACTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGACTGGCTGATGGATGTCACAAGATTTGATATTGATAAGCTCCCACCACTCCATTTTCCGAAAGATTTTGACCCAAATGCCTCGTTTCTTCATCATTTTGATATTGCAGATGCTGCAGCGAAGGCCAAACATGAAGAAACTGGGATGCTTTTGCTTCAGAAGTCGTCTCCTTCACCCAACCATGCTTCTTTTTCTGCTCTTCAGCTTCAAACCAACGCCATGACTGAAAACTGTTGCCATTTTGACCCTCCAAGCTTTCCATTCCCATTAATGGATCAGGCCAATCCAGCTTCATTTTCCTCACCTTCTGAGCAGTTGCTGTTCCGTCCATTGACGATGCCACCCGAAGTTTCTTCTTACCTTCCTAACGGTGGAAATTAA

Coding sequence (CDS)

ATGACAGGGAGAGTAAATAATATGATCTCAAAATTGAAGCAAGAGGGCGTTCATGTTGAAGCAAAACAAATGGAGGGCAAAAGGAAGAAGGGGCCTTCAAGGCAAGGGCCATTTCTTAGAGGCAATCCAAGAATTTTTAGAGTTTCTCCTTTGTTTGGAGGAAAAGACAGGCACAGCAAAGTTTGCACAATGAAGGGCTTAAGAGACAGAAGGATTAGGCTTTCAGCTCCCACTGCTATTCAACTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGACTGGCTGATGGATGTCACAAGATTTGATATTGATAAGCTCCCACCACTCCATTTTCCGAAAGATTTTGACCCAAATGCCTCGTTTCTTCATCATTTTGATATTGCAGATGCTGCAGCGAAGGCCAAACATGAAGAAACTGGGATGCTTTTGCTTCAGAAGTCGTCTCCTTCACCCAACCATGCTTCTTTTTCTGCTCTTCAGCTTCAAACCAACGCCATGACTGAAAACTGTTGCCATTTTGACCCTCCAAGCTTTCCATTCCCATTAATGGATCAGGCCAATCCAGCTTCATTTTCCTCACCTTCTGAGCAGTTGCTGTTCCGTCCATTGACGATGCCACCCGAAGTTTCTTCTTACCTTCCTAACGGTGGAAATTAA

Protein sequence

MTGRVNNMISKLKQEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN

Homology

[Close]

BLAST of CmaCh13G010690.1 vs. Swiss-Prot
Match: TCP5_ARATH (Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 33  SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLS 92
           SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLGLS
Sbjct: 42  SRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLS 101

Query: 93  QPSKVIDWLMDVTRFDIDKLPPLHFPKDFD---PNASF 128
           QPSKVIDWL++  + D+DKLPPL FP  F+   PN  F
Sbjct: 102 QPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQMYPNLIF 139

[Close]

BLAST of CmaCh13G010690.1 vs. Swiss-Prot
Match: TCP17_ARATH (Transcription factor TCP17 OS=Arabidopsis thaliana GN=TCP17 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 1


Query: 42  NPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 101
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS  TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 102 MDVTRFDIDKLPPLHFPKDF---DPNASFL 129
           ++V + D+D LPPL FP  F   +PN + L
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGL 110

[Close]

BLAST of CmaCh13G010690.1 vs. Swiss-Prot
Match: TCP13_ARATH (Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = 1


Query: 11  KLKQEGVHVEAKQMEGKR--KKGP----SRQGPFLRG-NPRIFRVSPLFGGKDRHSKVCT 70
           ++K++    E +   GK   KK P    S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 71  MKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHF-PKDFD 130
           ++GLRDRR+RLS PTAIQLYDLQ RLG+ QPSK +DWL+D  + +ID+LPPL   P++F 
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENF- 143

[Close]

BLAST of CmaCh13G010690.1 vs. Swiss-Prot
Match: TCP2_ARATH (Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1


Query: 44  RIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMD 103
           RI RVS   GGKDRHSKV T KG RDRR+RLS  TA+Q YDLQ+RLG  QPSK ++WL+ 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 104 VTRFDIDKLPPL---HFPKD 121
                I +LP L   HFP D
Sbjct: 92  AAEDSISELPSLNNTHFPTD 111

[Close]

BLAST of CmaCh13G010690.1 vs. Swiss-Prot
Match: TCP24_ARATH (Transcription factor TCP24 OS=Arabidopsis thaliana GN=TCP24 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-19
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 44  RIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMD 103
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ+RLG  QPSK ++WL++
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 104 VTRFDIDKLPPLH 117
                I  LP L+
Sbjct: 100 AASDSITDLPLLN 112

[Close]

BLAST of CmaCh13G010690.1 vs. TrEMBL
Match: A0A0A0LTI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.0e-67
Identity = 138/194 (71.13%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67
           MISKLK+EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 128 SFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFP 187
           S LHH DI DAA KAK+EET   LL                +QTN +   C HF+PP+FP
Sbjct: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 178

Query: 188 FPLM-DQANPASFS 199
           FP M DQ N A FS
Sbjct: 181 FPFMDDQTNSAPFS 178

[Close]

BLAST of CmaCh13G010690.1 vs. TrEMBL
Match: A0A0K9RR59_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038230 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.3e-32
Identity = 78/119 (65.55%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 12  LKQEGVHVEAKQMEGKRKKG--PSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRD 71
           L ++G     KQ EG   K   PSRQ      NPRI RVS  FGGKDRHSKVCT+KGLRD
Sbjct: 4   LNKDGPPYTTKQEEGDSSKAAAPSRQWSSGFKNPRIVRVSRTFGGKDRHSKVCTIKGLRD 63

Query: 72  RRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPL-HFPKDFDPNASF 128
           RRIRLS PTAIQLYDLQ+RLGLSQPSKVIDWL+D T+ DIDKLPPL   P  F+P+  +
Sbjct: 64  RRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKLDIDKLPPLPPIPGGFNPSQGY 122

[Close]

BLAST of CmaCh13G010690.1 vs. TrEMBL
Match: I1KD23_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G204300 PE=4 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 77/118 (65.25%), Postives = 85/118 (72.03%), Query Frame = 1


Query: 13  KQEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRI 72
           KQEG          K     SRQ    R NPRI RVS  FGGKDRHSKVCT++GLRDRRI
Sbjct: 16  KQEGDTTTNIDKFSKASSTTSRQWSAFR-NPRIVRVSRSFGGKDRHSKVCTIRGLRDRRI 75

Query: 73  RLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLHH 131
           RLS PTAIQLYDLQ++LGLSQPSKVIDWL++ T+FDIDKLPPL FP+ F     F HH
Sbjct: 76  RLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGF---GQFHHH 129

[Close]

BLAST of CmaCh13G010690.1 vs. TrEMBL
Match: A0A0B2QE85_GLYSO (Transcription factor TCP5 OS=Glycine soja GN=glysoja_032385 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 77/118 (65.25%), Postives = 85/118 (72.03%), Query Frame = 1


Query: 13  KQEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRI 72
           KQEG          K     SRQ    R NPRI RVS  FGGKDRHSKVCT++GLRDRRI
Sbjct: 16  KQEGDTTTNIDKFSKASSTTSRQWSAFR-NPRIVRVSRSFGGKDRHSKVCTIRGLRDRRI 75

Query: 73  RLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLHH 131
           RLS PTAIQLYDLQ++LGLSQPSKVIDWL++ T+FDIDKLPPL FP+ F     F HH
Sbjct: 76  RLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGF---GQFHHH 129

[Close]

BLAST of CmaCh13G010690.1 vs. TrEMBL
Match: A0A151S0B6_CAJCA (Transcription factor TCP5 OS=Cajanus cajan GN=KK1_030124 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 10  SKLKQEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRD 69
           S+ KQEG     K    K     SRQ    R NPRI RVS  FGGKDRHSKVCT++GLRD
Sbjct: 11  SQAKQEGDTNSIKF--SKASSTTSRQWSAFR-NPRIVRVSRSFGGKDRHSKVCTIRGLRD 70

Query: 70  RRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLH 129
           RRIRLS PTAIQLYDLQ++LGLSQPSKVIDWL++ T+FDIDKLPPL FP+ F   A F H
Sbjct: 71  RRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGF---AQFHH 124

[Close]

BLAST of CmaCh13G010690.1 vs. TAIR10
Match: AT5G60970.1 (AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5)

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-33
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 33  SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLS 92
           SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLGLS
Sbjct: 42  SRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLS 101

Query: 93  QPSKVIDWLMDVTRFDIDKLPPLHFPKDFD---PNASF 128
           QPSKVIDWL++  + D+DKLPPL FP  F+   PN  F
Sbjct: 102 QPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQMYPNLIF 139

[Close]

BLAST of CmaCh13G010690.1 vs. TAIR10
Match: AT5G08070.1 (AT5G08070.1 TCP domain protein 17)

HSP 1 Score: 131.0 bits (328), Expect = 9.4e-31
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 1


Query: 42  NPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 101
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS  TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 102 MDVTRFDIDKLPPLHFPKDF---DPNASFL 129
           ++V + D+D LPPL FP  F   +PN + L
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGL 110

[Close]

BLAST of CmaCh13G010690.1 vs. TAIR10
Match: AT3G02150.2 (AT3G02150.2 plastid transcription factor 1)

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-28
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = 1


Query: 11  KLKQEGVHVEAKQMEGKR--KKGP----SRQGPFLRG-NPRIFRVSPLFGGKDRHSKVCT 70
           ++K++    E +   GK   KK P    S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 71  MKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHF-PKDFD 130
           ++GLRDRR+RLS PTAIQLYDLQ RLG+ QPSK +DWL+D  + +ID+LPPL   P++F 
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENF- 143

[Close]

BLAST of CmaCh13G010690.1 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1


Query: 44  RIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMD 103
           RI RVS   GGKDRHSKV T KG RDRR+RLS  TA+Q YDLQ+RLG  QPSK ++WL+ 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 104 VTRFDIDKLPPL---HFPKD 121
                I +LP L   HFP D
Sbjct: 92  AAEDSISELPSLNNTHFPTD 111

[Close]

BLAST of CmaCh13G010690.1 vs. TAIR10
Match: AT1G30210.1 (AT1G30210.1 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-20
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 44  RIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMD 103
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ+RLG  QPSK ++WL++
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 104 VTRFDIDKLPPLH 117
                I  LP L+
Sbjct: 100 AASDSITDLPLLN 112

[Close]

BLAST of CmaCh13G010690.1 vs. NCBI nr
Match: gi|659068735|ref|XP_008445912.1| (PREDICTED: transcription factor TCP5 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 5.9e-67
Identity = 138/195 (70.77%), Postives = 150/195 (76.92%), Query Frame = 1


Query: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 128 SFLHHFDIADAAA--KAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPS 187
           S LHH DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 179

Query: 188 FPFPLMDQANPASFS 199
           FPFP M Q N + FS
Sbjct: 181 FPFPFMYQTNSSPFS 179

[Close]

BLAST of CmaCh13G010690.1 vs. NCBI nr
Match: gi|778664744|ref|XP_011660343.1| (PREDICTED: transcription factor TCP5 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 1.0e-66
Identity = 138/194 (71.13%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67
           MISKLK+EG H EAKQ +GK KK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 128 SFLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFP 187
           S LHH DI DAA KAK+EET   LL                +QTN +   C HF+PP+FP
Sbjct: 121 SILHHSDIGDAAFKAKNEETDHTLL----------------VQTNDINGVCSHFEPPTFP 178

Query: 188 FPLM-DQANPASFS 199
           FP M DQ N A FS
Sbjct: 181 FPFMDDQTNSAPFS 178

[Close]

BLAST of CmaCh13G010690.1 vs. NCBI nr
Match: gi|698461316|ref|XP_009781748.1| (PREDICTED: transcription factor TCP5-like [Nicotiana sylvestris])

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 42  NPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 101
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLGLSQPSKV+DWL
Sbjct: 40  NPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWL 99

Query: 102 MDVTRFDIDKLPPLHFPKDFDPNASFLHHFDIADAAAKAKHEETGMLLLQKSSPSPN 159
           ++VT+ +IDKLPPL  P  +       HHFD A+  AK+K  +T  +  +  S + N
Sbjct: 100 IEVTKHEIDKLPPLQIPPGYFAQFQGDHHFDAANLRAKSKVIDTDTVYGKNKSIASN 156

[Close]

BLAST of CmaCh13G010690.1 vs. NCBI nr
Match: gi|697133600|ref|XP_009620849.1| (PREDICTED: transcription factor TCP5 [Nicotiana tomentosiformis])

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 42  NPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 101
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLGLSQPSKV+DWL
Sbjct: 41  NPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWL 100

Query: 102 MDVTRFDIDKLPPLHFPKDFDPNASFLHHFDIADAAAKAKHEETGMLLLQKSSPSPN 159
           ++ T+ +IDKLPPL  P  +       HHFD A+  AK+K  +T  +  +  S + N
Sbjct: 101 IEATKHEIDKLPPLQIPPGYFAQFQGDHHFDAANLRAKSKVIDTDTVYGKNKSIASN 157

[Close]

BLAST of CmaCh13G010690.1 vs. NCBI nr
Match: gi|902230684|gb|KNA21953.1| (hypothetical protein SOVF_038230 [Spinacia oleracea])

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 78/119 (65.55%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 12  LKQEGVHVEAKQMEGKRKKG--PSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRD 71
           L ++G     KQ EG   K   PSRQ      NPRI RVS  FGGKDRHSKVCT+KGLRD
Sbjct: 4   LNKDGPPYTTKQEEGDSSKAAAPSRQWSSGFKNPRIVRVSRTFGGKDRHSKVCTIKGLRD 63

Query: 72  RRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPL-HFPKDFDPNASF 128
           RRIRLS PTAIQLYDLQ+RLGLSQPSKVIDWL+D T+ DIDKLPPL   P  F+P+  +
Sbjct: 64  RRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKLDIDKLPPLPPIPGGFNPSQGY 122

The following BLAST results are available for this feature:

BLAST of CmaCh13G010690.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP5_ARATH	1.0e-31	70.41	Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=1 SV=1	[more]
TCP17_ARATH	1.7e-29	71.11	Transcription factor TCP17 OS=Arabidopsis thaliana GN=TCP17 PE=1 SV=1	[more]
TCP13_ARATH	4.6e-27	52.34	Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1	[more]
TCP2_ARATH	2.7e-19	60.00	Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=1 SV=1	[more]
TCP24_ARATH	7.8e-19	64.38	Transcription factor TCP24 OS=Arabidopsis thaliana GN=TCP24 PE=1 SV=1	[more]

BLAST of CmaCh13G010690.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTI3_CUCSA	7.0e-67	71.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039270 PE=4 SV=1	[more]
A0A0K9RR59_SPIOL	7.3e-32	65.55	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038230 PE=4 SV=1	[more]
I1KD23_SOYBN	1.2e-31	65.25	Uncharacterized protein OS=Glycine max GN=GLYMA_06G204300 PE=4 SV=2	[more]
A0A0B2QE85_GLYSO	1.2e-31	65.25	Transcription factor TCP5 OS=Glycine soja GN=glysoja_032385 PE=4 SV=1	[more]
A0A151S0B6_CAJCA	4.7e-31	65.83	Transcription factor TCP5 OS=Cajanus cajan GN=KK1_030124 PE=4 SV=1	[more]

BLAST of CmaCh13G010690.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60970.1	5.9e-33	70.41	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	9.4e-31	71.11	TCP domain protein 17	[more]
AT3G02150.2	2.6e-28	52.34	plastid transcription factor 1	[more]
AT4G18390.1	1.5e-20	60.00	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]
AT1G30210.1	4.4e-20	64.38	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

BLAST of CmaCh13G010690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068735\|ref\|XP_008445912.1\|	5.9e-67	70.77	PREDICTED: transcription factor TCP5 [Cucumis melo]	[more]
gi\|778664744\|ref\|XP_011660343.1\|	1.0e-66	71.13	PREDICTED: transcription factor TCP5 [Cucumis sativus]	[more]
gi\|698461316\|ref\|XP_009781748.1\|	2.1e-32	62.39	PREDICTED: transcription factor TCP5-like [Nicotiana sylvestris]	[more]
gi\|697133600\|ref\|XP_009620849.1\|	6.2e-32	61.54	PREDICTED: transcription factor TCP5 [Nicotiana tomentosiformis]	[more]
gi\|902230684\|gb\|KNA21953.1\|	1.0e-31	65.55	hypothetical protein SOVF_038230 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G010690	CmaCh13G010690	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G010690.1	CmaCh13G010690.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G010690.1.CDS.1	CmaCh13G010690.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G010690.1.exon.1	CmaCh13G010690.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 54..129 score: 8.4
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 54..112 score: 2
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 42..121 score: 5.6
None	No IPR available	PANTHER	PTHR31072:SF24	TRANSCRIPTION FACTOR TCP17-RELATED	coord: 42..121 score: 5.6