CmaCh13G007550.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G007550.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ankyrin repeat family protein
Location	Cma_Chr13 : 6595040 .. 6595976 (-)
Sequence length	507

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGTCTCACGATATTTATTCAATGGGCTAGAACTAAACTACACAACTTCCTTTATTTATTTCTTATTGTTATGAATTTGGTTGGTAAACTTTGAATTTTACTTCCGTTCGTCAATTTTTGAATGTCTAAAGTTCCCCGTTTTATTTTTTATTATTATTAATTCGGTCGATAAACTTTCAACTTTAGGTCTATTCGTCTATTTTTTTTTTAATGTCTGAACTTTCAATTTTAGTTTTAAGAAGTTTATCTAACAATATTTTAAATTTTTTTAGGAAGCAAAAATGTATTTTTTTAAAAGTTAACAATAAATTAATTTAAATGGAAGTTTTCATTTATTTTAATTTAGTCTAATGTTTAGGTCAAACTGTTCTTTTTTTTTTTTTTTTTTTTTAAACACCTTTGTTAAACTTGTGAATGTGAACATTTTTTCAGGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

mRNA sequence

ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

Coding sequence (CDS)

ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

Protein sequence

MVPVHQLSSNSSTTIKLISTTVSSTKLNCQHENVKEDQHQPTIVNDKASRNQRRDQQDQQLCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGAVDIVRHTQTTKRQHLEKISTVHIEKKKN

Homology

[Close]

BLAST of CmaCh13G007550.1 vs. TrEMBL
Match: A0A0A0LUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

[Close]

BLAST of CmaCh13G007550.1 vs. TrEMBL
Match: E5GC67_CUCME (Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

[Close]

BLAST of CmaCh13G007550.1 vs. TrEMBL
Match: A0A0A0LX18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 67  KGDWKAAQDIEKEHKGI-LSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATN 126
           KGDWKAA+ + +EH+ I L  VISKDR+ETALHIATRFN   FV+KL+ +L   DLEA N
Sbjct: 2   KGDWKAAEKLVQEHENISLLDVISKDRKETALHIATRFNNTAFVKKLMPQLTENDLEAKN 61

Query: 127 IYGNTALCIAATSGAVDIVR 146
           IYGNT LCIAA +GA DI +
Sbjct: 62  IYGNTPLCIAAMTGAADIAK 81

[Close]

BLAST of CmaCh13G007550.1 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1


Query: 35  KEDQHQPTI--------VNDKA-SRNQRRDQQDQ---QLCDAATKGDWKAAQDIEKEHKG 94
           +E+QHQ  I         ND + +R+ R D       ++  AA KGDW+ A+ +E  H G
Sbjct: 64  EENQHQLVIGSRTPEPPKNDMSWARSIRVDDNRSLRAKMHQAALKGDWEGAKQMEMMHPG 123

Query: 95  ILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGAVD 146
            L+ VIS +R ETALHIATR  +A+FVEKLV++L+  +L + N YGNTALCIAA SGAV 
Sbjct: 124 ALTMVIS-ERSETALHIATRVKRASFVEKLVERLDEHELASKNKYGNTALCIAAASGAVA 183

[Close]

BLAST of CmaCh13G007550.1 vs. TrEMBL
Match: G7IDB9_MEDTR (Ankyrin repeat protein OS=Medicago truncatula GN=MTR_1g113820 PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 61  LCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKD 120
           +C AA KGDW  A   +K H   +S  ++ D + TALHIA R  +  FVEKLV++ N KD
Sbjct: 56  ICMAAAKGDWNKASSYDKTHPNWISTPLTMDGD-TALHIAVRMEKIKFVEKLVKRTNKKD 115

Query: 121 LEATNIYGNTALCIAATSGAVDIVR 146
           +E   + GNT  C+AA SG V I R
Sbjct: 116 MEIRRVDGNTVFCLAAISGNVKIAR 139

[Close]

BLAST of CmaCh13G007550.1 vs. TAIR10
Match: AT5G35830.1 (AT5G35830.1 Ankyrin repeat family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 60  QLCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVK 119
           QL  AA KGDWKAA  I  E K I+ + I+  + ET LHIA       FV  L+  L   
Sbjct: 90  QLYQAALKGDWKAANGIIIEQKYIIYQKITS-KSETVLHIAVAAKHEGFVRNLLGSLESN 149

Query: 120 DLEATNIYGNTALCIAATSGAVDIVR 146
           DL   N+ GNTALC AA SG V+I +
Sbjct: 150 DLALRNVDGNTALCFAAASGVVEIAK 174

[Close]

BLAST of CmaCh13G007550.1 vs. NCBI nr
Match: gi|778664857|ref|XP_011648419.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

[Close]

BLAST of CmaCh13G007550.1 vs. NCBI nr
Match: gi|700209406|gb|KGN64502.1| (hypothetical protein Csa_1G062280 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

[Close]

BLAST of CmaCh13G007550.1 vs. NCBI nr
Match: gi|659067708|ref|XP_008440886.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

[Close]

BLAST of CmaCh13G007550.1 vs. NCBI nr
Match: gi|307136229|gb|ADN34066.1| (ankyrin repeat family protein [Cucumis melo subsp. melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

[Close]

BLAST of CmaCh13G007550.1 vs. NCBI nr
Match: gi|778664854|ref|XP_011648417.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 1


Query: 22  VSSTKLNCQHENVKEDQHQPTIVNDKASRNQRRDQQDQQLCDAATKGDWKAAQDIEKEHK 81
           +   K N  H+ +   +    +V     R   ++  + +LC+AA KGDWKAA+ + +EH+
Sbjct: 38  IDDDKKNSYHKTIIRKE----LVQTPLCREATKELVETRLCEAAMKGDWKAAEKLVQEHE 97

Query: 82  GI-LSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGA 141
            I L  VISKDR+ETALHIATRFN   FV+KL+ +L   DLEA NIYGNT LCIAA +GA
Sbjct: 98  NISLLDVISKDRKETALHIATRFNNTAFVKKLMPQLTENDLEAKNIYGNTPLCIAAMTGA 157

Query: 142 VDIVR 146
            DI +
Sbjct: 158 ADIAK 158

The following BLAST results are available for this feature:

BLAST of CmaCh13G007550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G007550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUS0_CUCSA	1.4e-30	67.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1	[more]
E5GC67_CUCME	2.5e-29	58.82	Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LX18_CUCSA	1.5e-18	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1	[more]
A0A0A0LUR7_CUCSA	1.4e-14	47.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1	[more]
G7IDB9_MEDTR	1.8e-11	47.06	Ankyrin repeat protein OS=Medicago truncatula GN=MTR_1g113820 PE=4 SV=2	[more]

BLAST of CmaCh13G007550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35830.1	2.5e-12	47.67	Ankyrin repeat family protein	[more]

BLAST of CmaCh13G007550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664857\|ref\|XP_011648419.1\|	1.9e-30	67.50	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|700209406\|gb\|KGN64502.1\|	1.9e-30	67.50	hypothetical protein Csa_1G062280 [Cucumis sativus]	[more]
gi\|659067708\|ref\|XP_008440886.1\|	3.7e-29	58.82	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
gi\|307136229\|gb\|ADN34066.1\|	3.7e-29	58.82	ankyrin repeat family protein [Cucumis melo subsp. melo]	[more]
gi\|778664854\|ref\|XP_011648417.1\|	1.4e-20	48.80	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G007550	CmaCh13G007550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007550.1	CmaCh13G007550.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007550.1.CDS.2	CmaCh13G007550.1.CDS.2	CDS
CmaCh13G007550.1.CDS.1	CmaCh13G007550.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007550.1.exon.2	CmaCh13G007550.1.exon.2	exon
CmaCh13G007550.1.exon.1	CmaCh13G007550.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 55..145 score: 1.4
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 90..145 score: 4.
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 92..145 score: 9
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 49..145 score: 5.8
None	No IPR available	PANTHER	PTHR24128	FAMILY NOT NAMED	coord: 50..145 score: 3.8
None	No IPR available	PANTHER	PTHR24128:SF16	ANKYRIN REPEAT-CONTAINING PROTEIN	coord: 50..145 score: 3.8