CmaCh13G007550 (gene) Cucurbita maxima (Rimu)

NameCmaCh13G007550
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat family protein
LocationCma_Chr13 : 6595040 .. 6595976 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGTCTCACGATATTTATTCAATGGGCTAGAACTAAACTACACAACTTCCTTTATTTATTTCTTATTGTTATGAATTTGGTTGGTAAACTTTGAATTTTACTTCCGTTCGTCAATTTTTGAATGTCTAAAGTTCCCCGTTTTATTTTTTATTATTATTAATTCGGTCGATAAACTTTCAACTTTAGGTCTATTCGTCTATTTTTTTTTTAATGTCTGAACTTTCAATTTTAGTTTTAAGAAGTTTATCTAACAATATTTTAAATTTTTTTAGGAAGCAAAAATGTATTTTTTTAAAAGTTAACAATAAATTAATTTAAATGGAAGTTTTCATTTATTTTAATTTAGTCTAATGTTTAGGTCAAACTGTTCTTTTTTTTTTTTTTTTTTTTTAAACACCTTTGTTAAACTTGTGAATGTGAACATTTTTTCAGGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

mRNA sequence

ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

Coding sequence (CDS)

ATGGTGCCGGTTCACCAGCTGTCTTCAAATTCGTCGACCACCATAAAATTGATATCGACGACGGTAAGTTCTACGAAGTTAAATTGTCAACACGAGAACGTGAAGGAGGATCAACACCAACCGACGATCGTTAACGACAAAGCTTCACGGAACCAAAGAAGGGACCAGCAGGACCAGCAGCTATGCGATGCTGCAACCAAGGGTGACTGGAAGGCTGCACAGGACATCGAAAAGGAACATAAGGGGATCCTATCGAAGGTAATAAGCAAGGATAGGGAAGAAACAGCTCTCCACATTGCCACCAGATTCAACCAGGCTACTTTCGTGGAGAAGCTGGTTCAAAAACTGAACGTAAAGGACTTGGAAGCCACAAATATATATGGAAACACAGCCCTTTGCATCGCTGCAACATCAGGCGCTGTGGATATTGTTAGACACACTCAAACAACAAAGAGACAACACTTAGAAAAAATAAGCACGGTACATATAGAGAAGAAAAAAAACTAA

Protein sequence

MVPVHQLSSNSSTTIKLISTTVSSTKLNCQHENVKEDQHQPTIVNDKASRNQRRDQQDQQLCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGAVDIVRHTQTTKRQHLEKISTVHIEKKKN
BLAST of CmaCh13G007550 vs. TrEMBL
Match: A0A0A0LUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

BLAST of CmaCh13G007550 vs. TrEMBL
Match: E5GC67_CUCME (Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

BLAST of CmaCh13G007550 vs. TrEMBL
Match: A0A0A0LX18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1

Query: 67  KGDWKAAQDIEKEHKGI-LSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATN 126
           KGDWKAA+ + +EH+ I L  VISKDR+ETALHIATRFN   FV+KL+ +L   DLEA N
Sbjct: 2   KGDWKAAEKLVQEHENISLLDVISKDRKETALHIATRFNNTAFVKKLMPQLTENDLEAKN 61

Query: 127 IYGNTALCIAATSGAVDIVR 146
           IYGNT LCIAA +GA DI +
Sbjct: 62  IYGNTPLCIAAMTGAADIAK 81

BLAST of CmaCh13G007550 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1

Query: 35  KEDQHQPTI--------VNDKA-SRNQRRDQQDQ---QLCDAATKGDWKAAQDIEKEHKG 94
           +E+QHQ  I         ND + +R+ R D       ++  AA KGDW+ A+ +E  H G
Sbjct: 64  EENQHQLVIGSRTPEPPKNDMSWARSIRVDDNRSLRAKMHQAALKGDWEGAKQMEMMHPG 123

Query: 95  ILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGAVD 146
            L+ VIS +R ETALHIATR  +A+FVEKLV++L+  +L + N YGNTALCIAA SGAV 
Sbjct: 124 ALTMVIS-ERSETALHIATRVKRASFVEKLVERLDEHELASKNKYGNTALCIAAASGAVA 183

BLAST of CmaCh13G007550 vs. TrEMBL
Match: G7IDB9_MEDTR (Ankyrin repeat protein OS=Medicago truncatula GN=MTR_1g113820 PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1

Query: 61  LCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVKD 120
           +C AA KGDW  A   +K H   +S  ++ D + TALHIA R  +  FVEKLV++ N KD
Sbjct: 56  ICMAAAKGDWNKASSYDKTHPNWISTPLTMDGD-TALHIAVRMEKIKFVEKLVKRTNKKD 115

Query: 121 LEATNIYGNTALCIAATSGAVDIVR 146
           +E   + GNT  C+AA SG V I R
Sbjct: 116 MEIRRVDGNTVFCLAAISGNVKIAR 139

BLAST of CmaCh13G007550 vs. TAIR10
Match: AT5G35830.1 (AT5G35830.1 Ankyrin repeat family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1

Query: 60  QLCDAATKGDWKAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQKLNVK 119
           QL  AA KGDWKAA  I  E K I+ + I+  + ET LHIA       FV  L+  L   
Sbjct: 90  QLYQAALKGDWKAANGIIIEQKYIIYQKITS-KSETVLHIAVAAKHEGFVRNLLGSLESN 149

Query: 120 DLEATNIYGNTALCIAATSGAVDIVR 146
           DL   N+ GNTALC AA SG V+I +
Sbjct: 150 DLALRNVDGNTALCFAAASGVVEIAK 174

BLAST of CmaCh13G007550 vs. NCBI nr
Match: gi|778664857|ref|XP_011648419.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

BLAST of CmaCh13G007550 vs. NCBI nr
Match: gi|700209406|gb|KGN64502.1| (hypothetical protein Csa_1G062280 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-30
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKASRNQ-----RRDQQDQ---QLCDAATKGDWKAAQDIEKEHKGIL 92
           NVKEDQ QP +  D    +Q     RR + D    QLC+AAT+GDWKAA++IEK+ KGIL
Sbjct: 41  NVKEDQDQPMMGGDDDKTSQHKMGNRRREHDSIHIQLCEAATRGDWKAAEEIEKKSKGIL 100

Query: 93  SKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGNTALCIAATSGAVDI 144
           S+VISKDR+ETALHIATRFN+A FVEKL++ KL   DLEA NIYGNTALCIAATSGAVDI
Sbjct: 101 SEVISKDRKETALHIATRFNKAAFVEKLIKYKLTQTDLEAKNIYGNTALCIAATSGAVDI 160

BLAST of CmaCh13G007550 vs. NCBI nr
Match: gi|659067708|ref|XP_008440886.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

BLAST of CmaCh13G007550 vs. NCBI nr
Match: gi|307136229|gb|ADN34066.1| (ankyrin repeat family protein [Cucumis melo subsp. melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1

Query: 33  NVKEDQHQPTIVNDKA---------------------SRNQRR-DQQDQQLCDAATKGDW 92
           NVKE++ QP +  D                       SRN+R  D    QLC+AAT+GDW
Sbjct: 43  NVKEEEDQPMMGGDDKTSHHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDW 102

Query: 93  KAAQDIEKEHKGILSKVISKDREETALHIATRFNQATFVEKLVQ-KLNVKDLEATNIYGN 146
           KAA+++EK++KGILS VISKDR+ETALHIATRFN+A FVEKL++ KL +KDLEA NIYGN
Sbjct: 103 KAAEEMEKKNKGILSNVISKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGN 162

BLAST of CmaCh13G007550 vs. NCBI nr
Match: gi|778664854|ref|XP_011648417.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 1

Query: 22  VSSTKLNCQHENVKEDQHQPTIVNDKASRNQRRDQQDQQLCDAATKGDWKAAQDIEKEHK 81
           +   K N  H+ +   +    +V     R   ++  + +LC+AA KGDWKAA+ + +EH+
Sbjct: 38  IDDDKKNSYHKTIIRKE----LVQTPLCREATKELVETRLCEAAMKGDWKAAEKLVQEHE 97

Query: 82  GI-LSKVISKDREETALHIATRFNQATFVEKLVQKLNVKDLEATNIYGNTALCIAATSGA 141
            I L  VISKDR+ETALHIATRFN   FV+KL+ +L   DLEA NIYGNT LCIAA +GA
Sbjct: 98  NISLLDVISKDRKETALHIATRFNNTAFVKKLMPQLTENDLEAKNIYGNTPLCIAAMTGA 157

Query: 142 VDIVR 146
            DI +
Sbjct: 158 ADIAK 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUS0_CUCSA1.4e-3067.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1[more]
E5GC67_CUCME2.5e-2958.82Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LX18_CUCSA1.5e-1865.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1[more]
A0A0A0LUR7_CUCSA1.4e-1447.97Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1[more]
G7IDB9_MEDTR1.8e-1147.06Ankyrin repeat protein OS=Medicago truncatula GN=MTR_1g113820 PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT5G35830.12.5e-1247.67 Ankyrin repeat family protein[more]
Match NameE-valueIdentityDescription
gi|778664857|ref|XP_011648419.1|1.9e-3067.50PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus][more]
gi|700209406|gb|KGN64502.1|1.9e-3067.50hypothetical protein Csa_1G062280 [Cucumis sativus][more]
gi|659067708|ref|XP_008440886.1|3.7e-2958.82PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo][more]
gi|307136229|gb|ADN34066.1|3.7e-2958.82ankyrin repeat family protein [Cucumis melo subsp. melo][more]
gi|778664854|ref|XP_011648417.1|1.4e-2048.80PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G007550.1CmaCh13G007550.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020683Ankyrin repeat-containing domainGENE3DG3DSA:1.25.40.20coord: 55..145
score: 1.4
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 90..145
score: 4.
IPR020683Ankyrin repeat-containing domainPROFILEPS50297ANK_REP_REGIONcoord: 92..145
score: 9
IPR020683Ankyrin repeat-containing domainunknownSSF48403Ankyrin repeatcoord: 49..145
score: 5.8
NoneNo IPR availablePANTHERPTHR24128FAMILY NOT NAMEDcoord: 50..145
score: 3.8
NoneNo IPR availablePANTHERPTHR24128:SF16ANKYRIN REPEAT-CONTAINING PROTEINcoord: 50..145
score: 3.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G007550CmoCh18G002600Cucurbita moschata (Rifu)cmacmoB223
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G007550Cucumber (Chinese Long) v3cmacucB0249
CmaCh13G007550Cucumber (Chinese Long) v3cmacucB0265
CmaCh13G007550Watermelon (97103) v2cmawmbB212
CmaCh13G007550Watermelon (97103) v2cmawmbB228
CmaCh13G007550Wax gourdcmawgoB0257
CmaCh13G007550Wax gourdcmawgoB0270
CmaCh13G007550Cucurbita maxima (Rimu)cmacmaB209
CmaCh13G007550Cucurbita maxima (Rimu)cmacmaB231
CmaCh13G007550Cucurbita maxima (Rimu)cmacmaB238
CmaCh13G007550Cucumber (Gy14) v1cgycmaB0035
CmaCh13G007550Cucumber (Gy14) v1cgycmaB0162
CmaCh13G007550Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G007550Cucurbita moschata (Rifu)cmacmoB219
CmaCh13G007550Cucurbita moschata (Rifu)cmacmoB235
CmaCh13G007550Cucurbita moschata (Rifu)cmacmoB240
CmaCh13G007550Wild cucumber (PI 183967)cmacpiB219
CmaCh13G007550Wild cucumber (PI 183967)cmacpiB231
CmaCh13G007550Cucumber (Chinese Long) v2cmacuB218
CmaCh13G007550Cucumber (Chinese Long) v2cmacuB229
CmaCh13G007550Melon (DHL92) v3.5.1cmameB192
CmaCh13G007550Melon (DHL92) v3.5.1cmameB211
CmaCh13G007550Watermelon (Charleston Gray)cmawcgB185
CmaCh13G007550Watermelon (Charleston Gray)cmawcgB197
CmaCh13G007550Watermelon (97103) v1cmawmB188
CmaCh13G007550Watermelon (97103) v1cmawmB201
CmaCh13G007550Cucurbita pepo (Zucchini)cmacpeB212
CmaCh13G007550Cucurbita pepo (Zucchini)cmacpeB219
CmaCh13G007550Cucurbita pepo (Zucchini)cmacpeB232
CmaCh13G007550Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G007550Bottle gourd (USVL1VR-Ls)cmalsiB199
CmaCh13G007550Bottle gourd (USVL1VR-Ls)cmalsiB207
CmaCh13G007550Cucumber (Gy14) v2cgybcmaB074
CmaCh13G007550Cucumber (Gy14) v2cgybcmaB726
CmaCh13G007550Melon (DHL92) v3.6.1cmamedB233
CmaCh13G007550Melon (DHL92) v3.6.1cmamedB213
CmaCh13G007550Silver-seed gourdcarcmaB0691
CmaCh13G007550Silver-seed gourdcarcmaB0906
CmaCh13G007550Silver-seed gourdcarcmaB1274
CmaCh13G007550Silver-seed gourdcarcmaB1393