CmaCh13G000550.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G000550.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ran-binding protein 1-b-like protein
Location	Cma_Chr13 : 477964 .. 480312 (-)
Sequence length	806

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTTGTTCATCTCCAAGTGAAGTTCATCTTCATTACCACTTCTCCCATATATAAACCCTACTTTCTCCGCCCGCATTCTACCCATTCCGATCTGTATCTTCCAATCTCGCCGTCCACTTTCTCAATCAACCCTAAACCCTCATCCATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGTATGCTTTTCTCATTACTTGTTTTGTTTTTTTTTTTTTTTCTTTCTGATTTGCTCAGCCTAGGTTTTAAGTCGGATTTGTTTCATATTCGTATTCGTTATTTTAGGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGGTTTGTTCTCAATTCGCTGCTTGTTCCTTCGCTTATATATCAAGCTCCTTTTAGTTTAGGGTTTTTGTTACTTTCTTGGTTTTGGTGGTGTTCTTCATTTTTATTGATTGATTTGTCGTGATTGTAGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAGTGAGTACAACTCCGATTTTTTTTCTCTCTCTCTGAATCTTTGCTGTTGATTTACTGATAGACTCTTCTAGACTTTGGATATATTGATGTCTGTCTGGCAGTGGGCAATGTTCTTATTAAAGATCATTCTTATATTGTTTCACGTTTTGTGTTTTCTTTTCCACTCCAAACAAATTATATGTTTGAGCTCTCTAAGTTGTCTCTGGTTTGAAGTTCCACTAGGATAATTCTTTTCATTGACAGTACTTGGTTCTACTGATGGTATAGTATAGTTTTAGTCAGTTCATGATGGTAACTTTATCCATGAAACTTCACTGCTCCGCTTATTTTTACTGATTGTTGCTCCAAATATGAATATATTTCTTTTCATTTTCGTTAACATTTGTTTTTCCTATTAAAAATGGGGAAGTTCTCTGTTCAGACATCCATCTCTGTTAATATACACAGTTTATTCAATTATCTATTTCTGCAAGTGTCAACTTTGTAAGTCAGTTGTGGTGGTAATGGCAGAGTTGGAGATCGGTGCCTGAAAAGGATTGTTATTTTATATGGTGATGGTTGCTAATAAAATTTGGTAGGATAAAGTAGGTATAAAGGTGAGTGCTTTCGTTGATGTATACTTGGCTGTAATTTTATTTCAGAGGACCTTAGTAATGAAAATCAGTAGAAAAAATGGTGGAAGATGTTAATTGTATGGATGGAAATTTTATAGTTAACAATTATCGGTTGCTGCTGTTGCCCTTTGAGTTGTGTAACTGATATATTGTACGTTCAATGTTTCAATTCTAGTGTATCTGTAATGGGGAAAAATGGCTGTTCCCTTTTGTATTTCACAGCAGTTTTAGCTCATTTTATAACTTTTCCATTTCTTTTAACTACTCAACAGTCTTTTACCTCTTCTATTTTAGGGTCATTTAGTCCACAATATTTTCAAATTTCTAGTTTTGGCTTGGTTTTATGGTCTCTAGACATTCTTAGTGTCATCTGTTTCTCCCTTAGTGTCTTGCTTGTATTTGGGGTCTGTATCAGAGGTAGGTTTGAATAAACTCAAAGGTAGAAATACCAGGACTTACCTATGCATACTTGTTTCCCATGGAACAGCTATAGAGCTTATAGAGTCAGCTTGGCTTGAAATGTTGCAGCCTTCCCCCCCACCTTGGATATGAAATATTTTCTTTGTACTACATAGACTGCAAAACCTTCATGGAAACACCAAAGAAGTCCTCTAGTCCCAAAAGACAGATAACTTATTAACTGTGCTTGTCCTCTTTTTTCCGTCTTGGTTACACTTTTCTTTTTGGAATTATTAGACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

mRNA sequence

ATTTATTTGTTCATCTCCAAGTGAAGTTCATCTTCATTACCACTTCTCCCATATATAAACCCTACTTTCTCCGCCCGCATTCTACCCATTCCGATCTGTATCTTCCAATCTCGCCGTCCACTTTCTCAATCAACCCTAAACCCTCATCCATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

Coding sequence (CDS)

ATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

Protein sequence

MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE

Homology

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BLAST of CmaCh13G000550.1 vs. Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.9e-80
Identity = 165/214 (77.10%), Postives = 181/214 (84.58%), Query Frame = 1


Query: 7   ERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E R+EEEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEHVGN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAE 186
           GELKDELFCIRF SIENCKTFM+ F+EVAES+++KEE+KDA+  AGLLEKL+VE+ K  E
Sbjct: 129 GELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEE 188

Query: 187 KAEDKA---EFTPVKSEEKDKPEGEAAKSDAEKK 218
           K E KA     T VK+EE  K E EA KS   KK
Sbjct: 189 KTEAKAVETAKTEVKAEE--KKESEAEKSGEAKK 220

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BLAST of CmaCh13G000550.1 vs. Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.4e-75
Identity = 149/208 (71.63%), Postives = 174/208 (83.65%), Query Frame = 1


Query: 5   DTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEH GNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKK 184
           +DGELKDELFCIRF S+ENCK FM+ F+EVAES+++KEE+KDAS  AGLLEKL+VE+++ 
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKES 188

Query: 185 AEKAEDKAEFTPVKSEEKDKPEGEAAKS 213
            +K  +KAE        ++K   E+  S
Sbjct: 189 EKKPVEKAEENKKSEAVEEKKTEESVPS 216

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BLAST of CmaCh13G000550.1 vs. Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.3e-74
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 1   MASADTERRE-EEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS + ER   E+E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDF+DGELKDELFCIRF SIENCKTFME F E+AESQ+  +E+     AAGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+    EKA++  E  P K +++ K E    K + EKK
Sbjct: 181 EENISEEKAKEAEEKEPAKEDKETKKE----KVEEEKK 214

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BLAST of CmaCh13G000550.1 vs. Swiss-Prot
Match: RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 2   ASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDG 61
           AS + E++  E    AE         PIVKL  V   T EE E     +++KL+RFDK  
Sbjct: 51  ASTNDEKKPAEGDEDAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAA 110

Query: 62  NQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH- 121
           ++WKERG G  + LKHKETGK RLVMR+ KTLK+CANHL++P M +  +VG+D+S VW  
Sbjct: 111 SEWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTV 170

Query: 122 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKK 161
           A D ++GE   E F IRF + EN   F E F++  E   K
Sbjct: 171 AADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAK 210

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BLAST of CmaCh13G000550.1 vs. Swiss-Prot
Match: YRB1_YEAST (Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-30
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 1


Query: 8   RREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKER 67
           ++E ++AP + D        P+V LE+V V T EE+E+ +  +++KL+RFD D  +WKER
Sbjct: 51  KKEGDDAPESPD----IHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKER 110

Query: 68  GAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHAT-DFAD 127
           G G  KFLK+K+T KVR++MR+ KTLKICANH++ P  +++ +VG+D+S V+  T D A+
Sbjct: 111 GTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAE 170

Query: 128 GELKDELFCIRFPSIENCKTFMETFQEVAESQKK 161
           GE +   F IRF S EN   F E F++  E  KK
Sbjct: 171 GEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 200

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BLAST of CmaCh13G000550.1 vs. TrEMBL
Match: A0A0A0LXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.9e-102
Identity = 203/219 (92.69%), Postives = 213/219 (97.26%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEKKAE K+EDKAE TPVKS+E+DKPEGEA KSDAEKK+
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

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BLAST of CmaCh13G000550.1 vs. TrEMBL
Match: B5AJV3_CUCMN (Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.6e-92
Identity = 181/192 (94.27%), Postives = 188/192 (97.92%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDK 192
           DEKKAE K+EDK
Sbjct: 181 DEKKAEDKSEDK 192

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BLAST of CmaCh13G000550.1 vs. TrEMBL
Match: A0A0A0LV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERR++EEAPA EDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K +++D+P+GE  KS+AEKK
Sbjct: 181 E----KKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKK 213

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BLAST of CmaCh13G000550.1 vs. TrEMBL
Match: W9RUR3_9ROSA (Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.7e-87
Identity = 176/218 (80.73%), Postives = 192/218 (88.07%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           M+S D E REEE+APAA+DEDTGAQVAPIVKLEEVAV+TGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MSSNDPEHREEEDAPAADDEDTGAQVAPIVKLEEVAVSTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           A DFADGELKDELFCIRFPS+ENCK FME FQEVAESQ+KKEENKDASAAAGLLEKLSVE
Sbjct: 121 AADFADGELKDELFCIRFPSVENCKQFMEKFQEVAESQQKKEENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           ++K  EK  ++A   P  ++E    + +  K D EKK+
Sbjct: 181 EKKTEEKTSEEA---PAVAKEDKDVKSDTVKEDIEKKD 215

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BLAST of CmaCh13G000550.1 vs. TrEMBL
Match: F6GUQ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 6.6e-86
Identity = 175/218 (80.28%), Postives = 198/218 (90.83%), Query Frame = 1


Query: 1   MASADTERREEEEAP-AAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS+D ERRE+E+A  AAEDEDTGAQVAPIVKLEEVAVTTGEE+EDA+LDLK+KLYRFDK
Sbjct: 1   MASSDPERREDEDAAAAAEDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           DGNQWKERGAG+VK LKHKE+GKVRLVMRQSKTLKICANHLVLP+MSVQEH GNDKSCVW
Sbjct: 61  DGNQWKERGAGSVKLLKHKESGKVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCVW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDFADGELKDELFCIRF S+ENCK+FME  QEVAESQ+KKEENKDASAAAGLLEKLSV
Sbjct: 121 HATDFADGELKDELFCIRFASVENCKSFMEKVQEVAESQQKKEENKDASAAAGLLEKLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+++  +KAE++    PV ++E+ + E E  K+DAEKK
Sbjct: 181 EEKETEDKAEEE---KPVAAKEEKETESEQGKTDAEKK 215

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BLAST of CmaCh13G000550.1 vs. TAIR10
Match: AT1G07140.1 (AT1G07140.1 Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-81
Identity = 165/214 (77.10%), Postives = 181/214 (84.58%), Query Frame = 1


Query: 7   ERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E R+EEEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEHVGN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAE 186
           GELKDELFCIRF SIENCKTFM+ F+EVAES+++KEE+KDA+  AGLLEKL+VE+ K  E
Sbjct: 129 GELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEE 188

Query: 187 KAEDKA---EFTPVKSEEKDKPEGEAAKSDAEKK 218
           K E KA     T VK+EE  K E EA KS   KK
Sbjct: 189 KTEAKAVETAKTEVKAEE--KKESEAEKSGEAKK 220

[Close]

BLAST of CmaCh13G000550.1 vs. TAIR10
Match: AT2G30060.1 (AT2G30060.1 Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-76
Identity = 149/208 (71.63%), Postives = 174/208 (83.65%), Query Frame = 1


Query: 5   DTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEH GNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKK 184
           +DGELKDELFCIRF S+ENCK FM+ F+EVAES+++KEE+KDAS  AGLLEKL+VE+++ 
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKES 188

Query: 185 AEKAEDKAEFTPVKSEEKDKPEGEAAKS 213
            +K  +KAE        ++K   E+  S
Sbjct: 189 EKKPVEKAEENKKSEAVEEKKTEESVPS 216

[Close]

BLAST of CmaCh13G000550.1 vs. TAIR10
Match: AT5G58590.1 (AT5G58590.1 RAN binding protein 1)

HSP 1 Score: 278.1 bits (710), Expect = 4.7e-75
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 1   MASADTERRE-EEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS + ER   E+E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDF+DGELKDELFCIRF SIENCKTFME F E+AESQ+  +E+     AAGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+    EKA++  E  P K +++ K E    K + EKK
Sbjct: 181 EENISEEKAKEAEEKEPAKEDKETKKE----KVEEEKK 214

[Close]

BLAST of CmaCh13G000550.1 vs. TAIR10
Match: AT3G15970.1 (AT3G15970.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.2e-07
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 1


Query: 33  EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKF-LKHKETGKVRLVMRQSK 92
           ++V+V TGEENE A     S ++ + + G  WKERG G +K  +   E  K RLVMR   
Sbjct: 320 QDVSVETGEENEKAAFTADSVMFEYLEGG--WKERGKGELKVNISTTENRKARLVMRSKG 379

Query: 93  TLKICANHLVLPSMSV--QEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFME 152
             ++  N  + P M +   +  G   +CV   +D  DG        ++F       T +E
Sbjct: 380 NYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGL---STLALKFKD----PTVVE 439

Query: 153 TFQEVAESQKKKEENKDASAA 171
            F+ V E  K  + +   +AA
Sbjct: 440 EFRAVIEEHKDSKPSVAEAAA 451

[Close]

BLAST of CmaCh13G000550.1 vs. TAIR10
Match: AT1G52380.1 (AT1G52380.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.6e-06
Identity = 39/143 (27.27%), Postives = 63/143 (44.06%), Query Frame = 1


Query: 33  EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKT 92
           +EV+  TGEENE       S ++ +   G  WKERG G +K       GK RLVMR    
Sbjct: 293 QEVSTETGEENEKVAFSADSIMFEYLDGG--WKERGKGELKVNVSSNDGKARLVMRAKGN 352

Query: 93  LKICANHLVLPSMSV--QEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFMET 152
            ++  N  + P M +   +  G   +CV      ++G+     F ++F       T +E 
Sbjct: 353 YRLILNASLYPEMKLANMDKKGITFACV---NSVSEGKEGLSTFALKFKD----PTIVEE 412

Query: 153 FQEVAESQKKKEENKDASAAAGL 174
           F+   +  K  +  + A+  + L
Sbjct: 413 FRVAIDKHKDSKPMEKAAEKSAL 426

[Close]

BLAST of CmaCh13G000550.1 vs. NCBI nr
Match: gi|659115040|ref|XP_008457357.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 4.2e-102
Identity = 203/219 (92.69%), Postives = 213/219 (97.26%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEKKAE K+EDKAE TPVKS+E+DKPEGEA KSDAEKK+
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

[Close]

BLAST of CmaCh13G000550.1 vs. NCBI nr
Match: gi|778661748|ref|XP_011658664.1| (PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 5.2e-92
Identity = 181/192 (94.27%), Postives = 188/192 (97.92%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDK 192
           DEKKAE K+EDK
Sbjct: 181 DEKKAEDKSEDK 192

[Close]

BLAST of CmaCh13G000550.1 vs. NCBI nr
Match: gi|659115038|ref|XP_008457356.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 3.3e-91
Identity = 180/217 (82.95%), Postives = 201/217 (92.63%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MA++D+ERR++EEA A EDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K++++D+P+GE  KSDAEKK
Sbjct: 181 E----KKTEDKAEEEPAKAKKEDEPKGEPEKSDAEKK 213

[Close]

BLAST of CmaCh13G000550.1 vs. NCBI nr
Match: gi|449455021|ref|XP_004145252.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERR++EEAPA EDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K +++D+P+GE  KS+AEKK
Sbjct: 181 E----KKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKK 213

[Close]

BLAST of CmaCh13G000550.1 vs. NCBI nr
Match: gi|1009116105|ref|XP_015874596.1| (PREDICTED: ran-binding protein 1 homolog a [Ziziphus jujuba])

HSP 1 Score: 329.3 bits (843), Expect = 5.0e-87
Identity = 177/218 (81.19%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS + + REEEEAPA E+EDTGAQVAPIV+LEEVAV+TGEENE+AILDLK+KLYRFDKD
Sbjct: 1   MASNEPQHREEEEAPAGEEEDTGAQVAPIVRLEEVAVSTGEENEEAILDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKH E+ KVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHTESKKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRF S+ENCKTFME FQEVAESQ+KKEENKDA+AAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFASVENCKTFMEKFQEVAESQQKKEENKDATAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEK  EKA ++      K E+KD  + +A K DAEKK+
Sbjct: 181 DEKTEEKASEEVPAKEEKEEDKDAKK-DAVKGDAEKKD 217

The following BLAST results are available for this feature:

BLAST of CmaCh13G000550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBP1A_ARATH	5.9e-80	77.10	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1	[more]
RBP1B_ARATH	4.4e-75	71.63	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2	[more]
RBP1C_ARATH	8.3e-74	69.72	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1	[more]
RANG_SCHPO	1.0e-31	46.25	Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 97...	[more]
YRB1_YEAST	1.9e-30	45.45	Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmaCh13G000550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXN6_CUCSA	2.9e-102	92.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1	[more]
B5AJV3_CUCMN	3.6e-92	94.27	Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1	[more]
A0A0A0LV78_CUCSA	1.2e-90	82.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1	[more]
W9RUR3_9ROSA	7.7e-87	80.73	Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1	[more]
F6GUQ0_VITVI	6.6e-86	80.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=...	[more]

BLAST of CmaCh13G000550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07140.1	3.3e-81	77.10	Pleckstrin homology (PH) domain superfamily protein	[more]
AT2G30060.1	2.5e-76	71.63	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	4.7e-75	69.72	RAN binding protein 1	[more]
AT3G15970.1	9.2e-07	30.50	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT1G52380.1	4.6e-06	27.27	NUP50 (Nucleoporin 50 kDa) protein	[more]

BLAST of CmaCh13G000550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115040\|ref\|XP_008457357.1\|	4.2e-102	92.69	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]	[more]
gi\|778661748\|ref\|XP_011658664.1\|	5.2e-92	94.27	PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sa...	[more]
gi\|659115038\|ref\|XP_008457356.1\|	3.3e-91	82.95	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]	[more]
gi\|449455021\|ref\|XP_004145252.1\|	1.7e-90	82.49	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus]	[more]
gi\|1009116105\|ref\|XP_015874596.1\|	5.0e-87	81.19	PREDICTED: ran-binding protein 1 homolog a [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000156	Ran_bind_dom
IPR011993	PH-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G000550	CmaCh13G000550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G000550.1	CmaCh13G000550.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G000550.1.CDS.4	CmaCh13G000550.1.CDS.4	CDS
CmaCh13G000550.1.CDS.3	CmaCh13G000550.1.CDS.3	CDS
CmaCh13G000550.1.CDS.2	CmaCh13G000550.1.CDS.2	CDS
CmaCh13G000550.1.CDS.1	CmaCh13G000550.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G000550.1.five_prime_UTR.1	CmaCh13G000550.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G000550.1.exon.4	CmaCh13G000550.1.exon.4	exon
CmaCh13G000550.1.exon.3	CmaCh13G000550.1.exon.3	exon
CmaCh13G000550.1.exon.2	CmaCh13G000550.1.exon.2	exon
CmaCh13G000550.1.exon.1	CmaCh13G000550.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 37..154 score: 9.8
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 26..154 score: 5.1
IPR000156	Ran binding domain	PROFILE	PS50196	RANBD1	coord: 25..160 score: 34
IPR011993	PH domain-like	GENE3D	G3DSA:2.30.29.30		coord: 33..160 score: 2.3
IPR011993	PH domain-like	unknown	SSF50729	PH domain-like	coord: 24..162 score: 3.2
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..208 score: 1.7E
None	No IPR available	PANTHER	PTHR23138:SF93	RAN-BINDING PROTEIN 1 HOMOLOG A-RELATED	coord: 1..208 score: 1.7E