CmaCh13G000550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G000550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ran-binding protein 1-b-like protein
Location	Cma_Chr13 : 477964 .. 480312 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTTGTTCATCTCCAAGTGAAGTTCATCTTCATTACCACTTCTCCCATATATAAACCCTACTTTCTCCGCCCGCATTCTACCCATTCCGATCTGTATCTTCCAATCTCGCCGTCCACTTTCTCAATCAACCCTAAACCCTCATCCATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGTATGCTTTTCTCATTACTTGTTTTGTTTTTTTTTTTTTTTCTTTCTGATTTGCTCAGCCTAGGTTTTAAGTCGGATTTGTTTCATATTCGTATTCGTTATTTTAGGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGGTTTGTTCTCAATTCGCTGCTTGTTCCTTCGCTTATATATCAAGCTCCTTTTAGTTTAGGGTTTTTGTTACTTTCTTGGTTTTGGTGGTGTTCTTCATTTTTATTGATTGATTTGTCGTGATTGTAGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAGTGAGTACAACTCCGATTTTTTTTCTCTCTCTCTGAATCTTTGCTGTTGATTTACTGATAGACTCTTCTAGACTTTGGATATATTGATGTCTGTCTGGCAGTGGGCAATGTTCTTATTAAAGATCATTCTTATATTGTTTCACGTTTTGTGTTTTCTTTTCCACTCCAAACAAATTATATGTTTGAGCTCTCTAAGTTGTCTCTGGTTTGAAGTTCCACTAGGATAATTCTTTTCATTGACAGTACTTGGTTCTACTGATGGTATAGTATAGTTTTAGTCAGTTCATGATGGTAACTTTATCCATGAAACTTCACTGCTCCGCTTATTTTTACTGATTGTTGCTCCAAATATGAATATATTTCTTTTCATTTTCGTTAACATTTGTTTTTCCTATTAAAAATGGGGAAGTTCTCTGTTCAGACATCCATCTCTGTTAATATACACAGTTTATTCAATTATCTATTTCTGCAAGTGTCAACTTTGTAAGTCAGTTGTGGTGGTAATGGCAGAGTTGGAGATCGGTGCCTGAAAAGGATTGTTATTTTATATGGTGATGGTTGCTAATAAAATTTGGTAGGATAAAGTAGGTATAAAGGTGAGTGCTTTCGTTGATGTATACTTGGCTGTAATTTTATTTCAGAGGACCTTAGTAATGAAAATCAGTAGAAAAAATGGTGGAAGATGTTAATTGTATGGATGGAAATTTTATAGTTAACAATTATCGGTTGCTGCTGTTGCCCTTTGAGTTGTGTAACTGATATATTGTACGTTCAATGTTTCAATTCTAGTGTATCTGTAATGGGGAAAAATGGCTGTTCCCTTTTGTATTTCACAGCAGTTTTAGCTCATTTTATAACTTTTCCATTTCTTTTAACTACTCAACAGTCTTTTACCTCTTCTATTTTAGGGTCATTTAGTCCACAATATTTTCAAATTTCTAGTTTTGGCTTGGTTTTATGGTCTCTAGACATTCTTAGTGTCATCTGTTTCTCCCTTAGTGTCTTGCTTGTATTTGGGGTCTGTATCAGAGGTAGGTTTGAATAAACTCAAAGGTAGAAATACCAGGACTTACCTATGCATACTTGTTTCCCATGGAACAGCTATAGAGCTTATAGAGTCAGCTTGGCTTGAAATGTTGCAGCCTTCCCCCCCACCTTGGATATGAAATATTTTCTTTGTACTACATAGACTGCAAAACCTTCATGGAAACACCAAAGAAGTCCTCTAGTCCCAAAAGACAGATAACTTATTAACTGTGCTTGTCCTCTTTTTTCCGTCTTGGTTACACTTTTCTTTTTGGAATTATTAGACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

mRNA sequence

ATTTATTTGTTCATCTCCAAGTGAAGTTCATCTTCATTACCACTTCTCCCATATATAAACCCTACTTTCTCCGCCCGCATTCTACCCATTCCGATCTGTATCTTCCAATCTCGCCGTCCACTTTCTCAATCAACCCTAAACCCTCATCCATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

Coding sequence (CDS)

ATGGCGAGCGCCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGCAGAGGATGAAGACACTGGAGCACAAGTCGCCCCAATCGTTAAGTTGGAGGAGGTCGCCGTTACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTTGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAAACTGGAAAGGTTCGCCTTGTTATGAGGCAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAGCACGTTGGAAATGACAAGTCGTGCGTGTGGCATGCCACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGTATCAGATTCCCATCTATTGAGAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCTGCAGCAGCTGGTCTACTTGAAAAATTGAGCGTTGAAGACGAAAAGAAAGCCGAGAAAGCTGAAGATAAAGCTGAGTTCACACCTGTAAAATCTGAGGAAAAGGATAAACCTGAGGGCGAGGCAGCGAAATCAGATGCAGAAAAGAAAGAGTAG

Protein sequence

MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE

Homology

[Close]

BLAST of CmaCh13G000550 vs. Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.9e-80
Identity = 165/214 (77.10%), Postives = 181/214 (84.58%), Query Frame = 1


Query: 7   ERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E R+EEEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEHVGN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAE 186
           GELKDELFCIRF SIENCKTFM+ F+EVAES+++KEE+KDA+  AGLLEKL+VE+ K  E
Sbjct: 129 GELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEE 188

Query: 187 KAEDKA---EFTPVKSEEKDKPEGEAAKSDAEKK 218
           K E KA     T VK+EE  K E EA KS   KK
Sbjct: 189 KTEAKAVETAKTEVKAEE--KKESEAEKSGEAKK 220

[Close]

BLAST of CmaCh13G000550 vs. Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.4e-75
Identity = 149/208 (71.63%), Postives = 174/208 (83.65%), Query Frame = 1


Query: 5   DTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEH GNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKK 184
           +DGELKDELFCIRF S+ENCK FM+ F+EVAES+++KEE+KDAS  AGLLEKL+VE+++ 
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKES 188

Query: 185 AEKAEDKAEFTPVKSEEKDKPEGEAAKS 213
            +K  +KAE        ++K   E+  S
Sbjct: 189 EKKPVEKAEENKKSEAVEEKKTEESVPS 216

[Close]

BLAST of CmaCh13G000550 vs. Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.3e-74
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 1   MASADTERRE-EEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS + ER   E+E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDF+DGELKDELFCIRF SIENCKTFME F E+AESQ+  +E+     AAGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+    EKA++  E  P K +++ K E    K + EKK
Sbjct: 181 EENISEEKAKEAEEKEPAKEDKETKKE----KVEEEKK 214

[Close]

BLAST of CmaCh13G000550 vs. Swiss-Prot
Match: RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 2   ASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDG 61
           AS + E++  E    AE         PIVKL  V   T EE E     +++KL+RFDK  
Sbjct: 51  ASTNDEKKPAEGDEDAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAA 110

Query: 62  NQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH- 121
           ++WKERG G  + LKHKETGK RLVMR+ KTLK+CANHL++P M +  +VG+D+S VW  
Sbjct: 111 SEWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTV 170

Query: 122 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKK 161
           A D ++GE   E F IRF + EN   F E F++  E   K
Sbjct: 171 AADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAK 210

[Close]

BLAST of CmaCh13G000550 vs. Swiss-Prot
Match: YRB1_YEAST (Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-30
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 1


Query: 8   RREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKER 67
           ++E ++AP + D        P+V LE+V V T EE+E+ +  +++KL+RFD D  +WKER
Sbjct: 51  KKEGDDAPESPD----IHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKER 110

Query: 68  GAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHAT-DFAD 127
           G G  KFLK+K+T KVR++MR+ KTLKICANH++ P  +++ +VG+D+S V+  T D A+
Sbjct: 111 GTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAE 170

Query: 128 GELKDELFCIRFPSIENCKTFMETFQEVAESQKK 161
           GE +   F IRF S EN   F E F++  E  KK
Sbjct: 171 GEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 200

[Close]

BLAST of CmaCh13G000550 vs. TrEMBL
Match: A0A0A0LXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.9e-102
Identity = 203/219 (92.69%), Postives = 213/219 (97.26%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEKKAE K+EDKAE TPVKS+E+DKPEGEA KSDAEKK+
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

[Close]

BLAST of CmaCh13G000550 vs. TrEMBL
Match: B5AJV3_CUCMN (Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.6e-92
Identity = 181/192 (94.27%), Postives = 188/192 (97.92%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDK 192
           DEKKAE K+EDK
Sbjct: 181 DEKKAEDKSEDK 192

[Close]

BLAST of CmaCh13G000550 vs. TrEMBL
Match: A0A0A0LV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERR++EEAPA EDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K +++D+P+GE  KS+AEKK
Sbjct: 181 E----KKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKK 213

[Close]

BLAST of CmaCh13G000550 vs. TrEMBL
Match: W9RUR3_9ROSA (Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.7e-87
Identity = 176/218 (80.73%), Postives = 192/218 (88.07%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           M+S D E REEE+APAA+DEDTGAQVAPIVKLEEVAV+TGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MSSNDPEHREEEDAPAADDEDTGAQVAPIVKLEEVAVSTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           A DFADGELKDELFCIRFPS+ENCK FME FQEVAESQ+KKEENKDASAAAGLLEKLSVE
Sbjct: 121 AADFADGELKDELFCIRFPSVENCKQFMEKFQEVAESQQKKEENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           ++K  EK  ++A   P  ++E    + +  K D EKK+
Sbjct: 181 EKKTEEKTSEEA---PAVAKEDKDVKSDTVKEDIEKKD 215

[Close]

BLAST of CmaCh13G000550 vs. TrEMBL
Match: F6GUQ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 6.6e-86
Identity = 175/218 (80.28%), Postives = 198/218 (90.83%), Query Frame = 1


Query: 1   MASADTERREEEEAP-AAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS+D ERRE+E+A  AAEDEDTGAQVAPIVKLEEVAVTTGEE+EDA+LDLK+KLYRFDK
Sbjct: 1   MASSDPERREDEDAAAAAEDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           DGNQWKERGAG+VK LKHKE+GKVRLVMRQSKTLKICANHLVLP+MSVQEH GNDKSCVW
Sbjct: 61  DGNQWKERGAGSVKLLKHKESGKVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCVW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDFADGELKDELFCIRF S+ENCK+FME  QEVAESQ+KKEENKDASAAAGLLEKLSV
Sbjct: 121 HATDFADGELKDELFCIRFASVENCKSFMEKVQEVAESQQKKEENKDASAAAGLLEKLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+++  +KAE++    PV ++E+ + E E  K+DAEKK
Sbjct: 181 EEKETEDKAEEE---KPVAAKEEKETESEQGKTDAEKK 215

[Close]

BLAST of CmaCh13G000550 vs. TAIR10
Match: AT1G07140.1 (AT1G07140.1 Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-81
Identity = 165/214 (77.10%), Postives = 181/214 (84.58%), Query Frame = 1


Query: 7   ERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E R+EEEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEHVGN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAE 186
           GELKDELFCIRF SIENCKTFM+ F+EVAES+++KEE+KDA+  AGLLEKL+VE+ K  E
Sbjct: 129 GELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKTEE 188

Query: 187 KAEDKA---EFTPVKSEEKDKPEGEAAKSDAEKK 218
           K E KA     T VK+EE  K E EA KS   KK
Sbjct: 189 KTEAKAVETAKTEVKAEE--KKESEAEKSGEAKK 220

[Close]

BLAST of CmaCh13G000550 vs. TAIR10
Match: AT2G30060.1 (AT2G30060.1 Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-76
Identity = 149/208 (71.63%), Postives = 174/208 (83.65%), Query Frame = 1


Query: 5   DTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEH GNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKK 184
           +DGELKDELFCIRF S+ENCK FM+ F+EVAES+++KEE+KDAS  AGLLEKL+VE+++ 
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKES 188

Query: 185 AEKAEDKAEFTPVKSEEKDKPEGEAAKS 213
            +K  +KAE        ++K   E+  S
Sbjct: 189 EKKPVEKAEENKKSEAVEEKKTEESVPS 216

[Close]

BLAST of CmaCh13G000550 vs. TAIR10
Match: AT5G58590.1 (AT5G58590.1 RAN binding protein 1)

HSP 1 Score: 278.1 bits (710), Expect = 4.7e-75
Identity = 152/218 (69.72%), Postives = 175/218 (80.28%), Query Frame = 1


Query: 1   MASADTERRE-EEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAS + ER   E+E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDF+DGELKDELFCIRF SIENCKTFME F E+AESQ+  +E+     AAGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180

Query: 181 EDEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           E+    EKA++  E  P K +++ K E    K + EKK
Sbjct: 181 EENISEEKAKEAEEKEPAKEDKETKKE----KVEEEKK 214

[Close]

BLAST of CmaCh13G000550 vs. TAIR10
Match: AT3G15970.1 (AT3G15970.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.2e-07
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 1


Query: 33  EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKF-LKHKETGKVRLVMRQSK 92
           ++V+V TGEENE A     S ++ + + G  WKERG G +K  +   E  K RLVMR   
Sbjct: 320 QDVSVETGEENEKAAFTADSVMFEYLEGG--WKERGKGELKVNISTTENRKARLVMRSKG 379

Query: 93  TLKICANHLVLPSMSV--QEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFME 152
             ++  N  + P M +   +  G   +CV   +D  DG        ++F       T +E
Sbjct: 380 NYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGL---STLALKFKD----PTVVE 439

Query: 153 TFQEVAESQKKKEENKDASAA 171
            F+ V E  K  + +   +AA
Sbjct: 440 EFRAVIEEHKDSKPSVAEAAA 451

[Close]

BLAST of CmaCh13G000550 vs. TAIR10
Match: AT1G52380.1 (AT1G52380.1 NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.6e-06
Identity = 39/143 (27.27%), Postives = 63/143 (44.06%), Query Frame = 1


Query: 33  EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKT 92
           +EV+  TGEENE       S ++ +   G  WKERG G +K       GK RLVMR    
Sbjct: 293 QEVSTETGEENEKVAFSADSIMFEYLDGG--WKERGKGELKVNVSSNDGKARLVMRAKGN 352

Query: 93  LKICANHLVLPSMSV--QEHVGNDKSCVWHATDFADGELKDELFCIRFPSIENCKTFMET 152
            ++  N  + P M +   +  G   +CV      ++G+     F ++F       T +E 
Sbjct: 353 YRLILNASLYPEMKLANMDKKGITFACV---NSVSEGKEGLSTFALKFKD----PTIVEE 412

Query: 153 FQEVAESQKKKEENKDASAAAGL 174
           F+   +  K  +  + A+  + L
Sbjct: 413 FRVAIDKHKDSKPMEKAAEKSAL 426

[Close]

BLAST of CmaCh13G000550 vs. NCBI nr
Match: gi|659115040|ref|XP_008457357.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 4.2e-102
Identity = 203/219 (92.69%), Postives = 213/219 (97.26%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEKKAE K+EDKAE TPVKS+E+DKPEGEA KSDAEKK+
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

[Close]

BLAST of CmaCh13G000550 vs. NCBI nr
Match: gi|778661748|ref|XP_011658664.1| (PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 5.2e-92
Identity = 181/192 (94.27%), Postives = 188/192 (97.92%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPAAEDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAE-KAEDK 192
           DEKKAE K+EDK
Sbjct: 181 DEKKAEDKSEDK 192

[Close]

BLAST of CmaCh13G000550 vs. NCBI nr
Match: gi|659115038|ref|XP_008457356.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 3.3e-91
Identity = 180/217 (82.95%), Postives = 201/217 (92.63%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MA++D+ERR++EEA A EDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K++++D+P+GE  KSDAEKK
Sbjct: 181 E----KKTEDKAEEEPAKAKKEDEPKGEPEKSDAEKK 213

[Close]

BLAST of CmaCh13G000550 vs. NCBI nr
Match: gi|449455021|ref|XP_004145252.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERR++EEAPA EDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSM+VQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIENCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKK 218
           +    +K EDKAE  P K +++D+P+GE  KS+AEKK
Sbjct: 181 E----KKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKK 213

[Close]

BLAST of CmaCh13G000550 vs. NCBI nr
Match: gi|1009116105|ref|XP_015874596.1| (PREDICTED: ran-binding protein 1 homolog a [Ziziphus jujuba])

HSP 1 Score: 329.3 bits (843), Expect = 5.0e-87
Identity = 177/218 (81.19%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS + + REEEEAPA E+EDTGAQVAPIV+LEEVAV+TGEENE+AILDLK+KLYRFDKD
Sbjct: 1   MASNEPQHREEEEAPAGEEEDTGAQVAPIVRLEEVAVSTGEENEEAILDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120
           GNQWKERGAGTVKFLKH E+ KVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHTESKKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIENCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRF S+ENCKTFME FQEVAESQ+KKEENKDA+AAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFASVENCKTFMEKFQEVAESQQKKEENKDATAAAGLLEKLSVE 180

Query: 181 DEKKAEKAEDKAEFTPVKSEEKDKPEGEAAKSDAEKKE 219
           DEK  EKA ++      K E+KD  + +A K DAEKK+
Sbjct: 181 DEKTEEKASEEVPAKEEKEEDKDAKK-DAVKGDAEKKD 217

The following BLAST results are available for this feature:

BLAST of CmaCh13G000550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBP1A_ARATH	5.9e-80	77.10	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1	[more]
RBP1B_ARATH	4.4e-75	71.63	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2	[more]
RBP1C_ARATH	8.3e-74	69.72	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1	[more]
RANG_SCHPO	1.0e-31	46.25	Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 97...	[more]
YRB1_YEAST	1.9e-30	45.45	Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmaCh13G000550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXN6_CUCSA	2.9e-102	92.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1	[more]
B5AJV3_CUCMN	3.6e-92	94.27	Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1	[more]
A0A0A0LV78_CUCSA	1.2e-90	82.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1	[more]
W9RUR3_9ROSA	7.7e-87	80.73	Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1	[more]
F6GUQ0_VITVI	6.6e-86	80.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=...	[more]

BLAST of CmaCh13G000550 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07140.1	3.3e-81	77.10	Pleckstrin homology (PH) domain superfamily protein	[more]
AT2G30060.1	2.5e-76	71.63	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	4.7e-75	69.72	RAN binding protein 1	[more]
AT3G15970.1	9.2e-07	30.50	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT1G52380.1	4.6e-06	27.27	NUP50 (Nucleoporin 50 kDa) protein	[more]

BLAST of CmaCh13G000550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115040\|ref\|XP_008457357.1\|	4.2e-102	92.69	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]	[more]
gi\|778661748\|ref\|XP_011658664.1\|	5.2e-92	94.27	PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sa...	[more]
gi\|659115038\|ref\|XP_008457356.1\|	3.3e-91	82.95	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo]	[more]
gi\|449455021\|ref\|XP_004145252.1\|	1.7e-90	82.49	PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus]	[more]
gi\|1009116105\|ref\|XP_015874596.1\|	5.0e-87	81.19	PREDICTED: ran-binding protein 1 homolog a [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000156	Ran_bind_dom
IPR011993	PH-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G000550.1	CmaCh13G000550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 37..154 score: 9.8
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 26..154 score: 5.1
IPR000156	Ran binding domain	PROFILE	PS50196	RANBD1	coord: 25..160 score: 34
IPR011993	PH domain-like	GENE3D	G3DSA:2.30.29.30		coord: 33..160 score: 2.3
IPR011993	PH domain-like	unknown	SSF50729	PH domain-like	coord: 24..162 score: 3.2
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..208 score: 1.7E
None	No IPR available	PANTHER	PTHR23138:SF93	RAN-BINDING PROTEIN 1 HOMOLOG A-RELATED	coord: 1..208 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G000550	Watermelon (97103) v2	cmawmbB220
CmaCh13G000550	Watermelon (97103) v2	cmawmbB225
CmaCh13G000550	Wax gourd	cmawgoB0244
CmaCh13G000550	Wax gourd	cmawgoB0252
CmaCh13G000550	Cucurbita maxima (Rimu)	cmacmaB220
CmaCh13G000550	Cucurbita maxima (Rimu)	cmacmaB228
CmaCh13G000550	Cucurbita maxima (Rimu)	cmacmaB235
CmaCh13G000550	Cucurbita maxima (Rimu)	cmacmaB236
CmaCh13G000550	Cucumber (Gy14) v1	cgycmaB0386
CmaCh13G000550	Cucumber (Gy14) v1	cgycmaB0418
CmaCh13G000550	Cucurbita moschata (Rifu)	cmacmoB238
CmaCh13G000550	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G000550	Cucurbita moschata (Rifu)	cmacmoB226
CmaCh13G000550	Cucurbita moschata (Rifu)	cmacmoB232
CmaCh13G000550	Cucurbita moschata (Rifu)	cmacmoB239
CmaCh13G000550	Wild cucumber (PI 183967)	cmacpiB220
CmaCh13G000550	Cucumber (Chinese Long) v2	cmacuB219
CmaCh13G000550	Melon (DHL92) v3.5.1	cmameB194
CmaCh13G000550	Watermelon (Charleston Gray)	cmawcgB189
CmaCh13G000550	Watermelon (Charleston Gray)	cmawcgB194
CmaCh13G000550	Watermelon (97103) v1	cmawmB185
CmaCh13G000550	Watermelon (97103) v1	cmawmB209
CmaCh13G000550	Cucurbita pepo (Zucchini)	cmacpeB231
CmaCh13G000550	Cucurbita pepo (Zucchini)	cmacpeB235
CmaCh13G000550	Cucurbita pepo (Zucchini)	cmacpeB245
CmaCh13G000550	Cucurbita pepo (Zucchini)	cmacpeB249
CmaCh13G000550	Bottle gourd (USVL1VR-Ls)	cmalsiB196
CmaCh13G000550	Bottle gourd (USVL1VR-Ls)	cmalsiB201
CmaCh13G000550	Cucumber (Gy14) v2	cgybcmaB075
CmaCh13G000550	Melon (DHL92) v3.6.1	cmamedB215
CmaCh13G000550	Silver-seed gourd	carcmaB0728
CmaCh13G000550	Silver-seed gourd	carcmaB0866
CmaCh13G000550	Silver-seed gourd	carcmaB0939
CmaCh13G000550	Cucumber (Chinese Long) v3	cmacucB0250