CmaCh12G010520.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G010520.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L18-3
Location	Cma_Chr12 : 8322164 .. 8325805 (-)
Sequence length	951

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCGTCTTCGATAAATAGGGTTTTCGAAAGCCCTAAAAACCATTGTCGTTCACTCGTAGCAGTCGCCGTCGCGGAGCGGAAGGGTTTCTCCACCAAGAGCATCAATGGTCTGTTTCTTTCTCTTCCTCAATTCTTTACTATTTCTCCAATGGCGTAGATCAATGTCTGAGATTTGTGTTCCGTTAATTGCAGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGACCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGGTTGGTTTTCTTATTTTTTATTTTTGCTAATCATCGCTGGTTCCGCTGTCGTGACGAGCATTTGCTTTCACAGATTAAAATTCTTTGAGAATTGTGATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACTAATGAATAAGTATGTTGTGATTAAACTTTAAGTTTTTGTTGAATGTGGAGTGGAATTTTAAATCTTGTTCTGCAAGAATTATCTTGAATTTTATACATCGTTATTTTCACGTTTTTTTCGCTCGTATTATCTTGAATTATCTTGAATTTTTTTTTTCTAACTCAATGGTGCTTGAAATCTGACTGTTTGTTAAGAAAGTAGGTGAAGTTTATGTGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTTTGTAGGTCCGGGAATGAACCTGTTTCCACATTTATCTGAGCCTAGGCTCAGAGTTAAACTTTCTGACTCAATTTGAACAACGAAGCAGAATAATTGGCCACCAATAAATCTAGAATTCGAATTTTTAGATACGAAATATTATATCTTCATCGATTGGCCAATGTTTTTAACTTTTCTTGAACTATATTTTGATTGAAATGCTGATTGTGTTATCAGCCGCAATGACGCAATATGTTAATCCCAGCTCTATGAGACTTTCTACAGGTCAAGGACTAGACAAGGTCCACATAATTACCTGAGCTCAAAATATTATTTTTTAATCGATGGGCCAATATTTATAACTTTTCTTAACTATATTTTGATTGAAATGCTTATTGTATTATCAGCAGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACAAGATCCACATATTTACCTGAGCTCAAAGTATTATTTTTAAATCTATGGGCCAATATTTTTAACTTTTCTTAAAACTATATTTTGATTGAAATTCTTATTGTATTATCAGCCGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACAAGATCAACATATTTACCTGAGCTCAAAATATTATTTTTAAATTGATGCCCAATATTTTTAACTTTTCTTTAATTATATTTTGATTGATAATGCTTAATTGTATTATCAACCGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACATGATCCACATATTTACCTGAGCTCAAAATATTATTTTTAAATCGATGGGCCAATATTTTTAACTTTTATTTTATTATATTTTATTGAAATGCTGATTTTATTATTAGCCGCTATGATGCAATATGATAATCCCAGCTCTATGAGACATTCTACAGGTCAAGGACTAGACAAGATCCACATATTTACCTGAGCTCAAAATATTTTACCCTTGAAATTCATTCATTTGTATCAAATTCAGCAGTAAAATTAGGATGACATATATGGGCTACCTTCATCATGAATTAATAACGAAGCCTGTCGGCATATCCTTCTGCCATTTCAGTCACTGGCTTCCTTTTCTCTGTATTTTTGAAAGGATTTTTGCACCGTTTGATTTTGAATAAATACATTATTCCCTTAAATTGTTGAATGATTGAGAGATAGGTTGTTCCCTGTGATGCTTTACTTTTTAAACCATGCTAATACTGATCACATGATGATTGATCTTCAACTCTTGTCTCTGAGGGAACTAGCCTACACTGTTGAATTAATTATTTCTGAAGGACCTTTGTTCGTTTGAATATCTAATATTGTATCCATATGAATTTATAATCTTATTCTGTGAGCATTATCTTTAACTTTAGCCATTGTAACTTAATGTGCAGTGATGATATTTGTGTATCCCAGCTCATTATGAGGCCTTCCGTAGGTCCGGGAATGAACCTGTTTCCACATTTATCTGAGCTTATTCAATTTAAACTTTCTTATTCAATTTGAACAACGAAGTGGAATAATTGGCCCATATTTTTAACTCTTAAATTATATTTTAATTGAAATGCTGTTGTTTTATCAGCCGCAATGATGAATTATGTTAATCCCAGCTCTATGAGACATTCTAAATGTCAATGACTAGACAAGATTCACATATTTACCTGAGCTCAAACTATTATACGCTTGAAGTTTTTTGCATTTCAAGATTATTTTCGATAATAATTCATTTTTATGGACACTTATCCTGTAGGTTTATTGCAAGCTGTTTATTGTTCATTATGCTTATTCGGGTCATTTAAGTGATGGGTTCTTTTAATTTTGTTTACTGAATTCAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTTAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGTGTGTGCTTCTATGTATGCATTACTTGTTCTTAACCATTTTATCCACATTGTTCGGTGTCTAACTTCACGTGGTTATAACATTGTACAGGAAGATAAAATTGCCGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTTCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCTGGTGGCGAGTGCTTGACCTTTGACCAGCTTGCCCTGAGAGCTCCTCTAGGCCAGAATACGGTACGATAGCGACTGTGTCCTGAATTTCATATTGACTTGTCGTTGAGCTCCCTATATTAACAATTGTTAGATTCAAACTTAATCTGCTGTAATTTTGCACCCAAAGGTTCTCCTTCGTGGACCAAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCTGGTGTACCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAGTTTCAGTCCCATGTTCAGCGCTATTTGTGAGACAGAAAATTCACGTTTTGGTCAACTTGAAGATACATTGTCATGTGAGATTCACTCATTTCTTTGTTCAAGTTTTCGCTATTACAACATCACAATCGTATTCAATGAGAAACATCTTGTATTTTCTTTCCTCCCACTTTTCCATCCTTATTTGCTTCATATTTTATAAGTGTCCATATTATTCTATGAACAAATTAGCCTTTAGTAAGTTATTGGTATATCTATATATTTTACAAATTATTTTGTAT

mRNA sequence

ATGCCCTCGTCTTCGATAAATAGGGTTTTCGAAAGCCCTAAAAACCATTGTCGTTCACTCGTAGCAGTCGCCGTCGCGGAGCGGAAGGGTTTCTCCACCAAGAGCATCAATGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGACCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTTAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTTCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCTGGTGGCGAGTGCTTGACCTTTGACCAGCTTGCCCTGAGAGCTCCTCTAGGCCAGAATACGGTTCTCCTTCGTGGACCAAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCTGGTGTACCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAGTTTCAGTCCCATGTTCAGCGCTATTTGTGAGACAGAAAATTCACGTTTTGGTCAACTTGAAGATACATTGTCATGTGAGATTCACTCATTTCTTTGTTCAAGTTTTCGCTATTACAACATCACAATCGTATTCAATGAGAAACATCTTGTATTTTCTTTCCTCCCACTTTTCCATCCTTATTTGCTTCATATTTTATAAGTGTCCATATTATTCTATGAACAAATTAGCCTTTAGTAAGTTATTGGTATATCTATATATTTTACAAATTATTTTGTAT

Coding sequence (CDS)

ATGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGACCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTTAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTTCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCTGGTGGCGAGTGCTTGACCTTTGACCAGCTTGCCCTGAGAGCTCCTCTAGGCCAGAATACGGTTCTCCTTCGTGGACCAAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCTGGTGTACCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAG

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

Homology

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BLAST of CmaCh12G010520.1 vs. Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.4e-90
Identity = 164/187 (87.70%), Postives = 181/187 (96.79%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of CmaCh12G010520.1 vs. Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-89
Identity = 163/187 (87.17%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

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BLAST of CmaCh12G010520.1 vs. Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.5e-84
Identity = 157/184 (85.33%), Postives = 174/184 (94.57%), Query Frame = 1


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

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BLAST of CmaCh12G010520.1 vs. Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 149/188 (79.26%), Postives = 167/188 (88.83%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of CmaCh12G010520.1 vs. Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.6e-65
Identity = 126/188 (67.02%), Postives = 158/188 (84.04%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGID +     +K  R  PKS+++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 60

Query: 61  PISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
            ISL+R+ +FMK  G+E+ IAV+VGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE
Sbjct: 61  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVRSKGRKFERARG
Sbjct: 121 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R SR Y+
Sbjct: 181 RRKSRRYK 187

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BLAST of CmaCh12G010520.1 vs. TrEMBL
Match: A0A0A0LFX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-95
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+M GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TrEMBL
Match: W9QQ74_9ROSA (60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.7e-95
Identity = 178/186 (95.70%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61
           GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 12  GIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 71

Query: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121
           +SLSRLI+FMKGKEDK+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 72  LSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 131

Query: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 132 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 191

Query: 182 SRGYRV 188
           SRG+RV
Sbjct: 192 SRGFRV 197

[Close]

BLAST of CmaCh12G010520.1 vs. TrEMBL
Match: A0A0D2TP40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-94
Identity = 179/187 (95.72%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TrEMBL
Match: A0A061F4C5_THECC (Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.3e-94
Identity = 178/187 (95.19%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TrEMBL
Match: A0A0D2P954_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G091200 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.6e-94
Identity = 177/187 (94.65%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKL+VKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLIVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARI+KAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIDKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TAIR10
Match: AT5G27850.1 (AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 331.6 bits (849), Expect = 3.0e-91
Identity = 164/187 (87.70%), Postives = 181/187 (96.79%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TAIR10
Match: AT3G05590.1 (AT3G05590.1 ribosomal protein L18)

HSP 1 Score: 330.5 bits (846), Expect = 6.8e-91
Identity = 163/187 (87.17%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of CmaCh12G010520.1 vs. TAIR10
Match: AT2G47570.1 (AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 5.1e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 1


Query: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of CmaCh12G010520.1 vs. NCBI nr
Match: gi|659070222|ref|XP_008454015.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 5.0e-96
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. NCBI nr
Match: gi|449454059|ref|XP_004144773.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.5e-95
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+M GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. NCBI nr
Match: gi|703068658|ref|XP_010088293.1| (60S ribosomal protein L18-3 [Morus notabilis])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 178/186 (95.70%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 2   GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPP 61
           GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAV+LKRLFMSKVNKPP
Sbjct: 12  GIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPP 71

Query: 62  ISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 121
           +SLSRLI+FMKGKEDK+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT
Sbjct: 72  LSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLT 131

Query: 122 FDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 181
           FDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN
Sbjct: 132 FDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRN 191

Query: 182 SRGYRV 188
           SRG+RV
Sbjct: 192 SRGFRV 197

[Close]

BLAST of CmaCh12G010520.1 vs. NCBI nr
Match: gi|823197185|ref|XP_012434195.1| (PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 179/187 (95.72%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of CmaCh12G010520.1 vs. NCBI nr
Match: gi|659099453|ref|XP_008450608.1| (PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 3.6e-94
Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FMKGKE KIAV+VGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

The following BLAST results are available for this feature:

BLAST of CmaCh12G010520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL183_ARATH	5.4e-90	87.70	60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1	[more]
RL182_ARATH	1.2e-89	87.17	60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2	[more]
RL18_CICAR	7.5e-84	85.33	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1	[more]
RL181_ARATH	2.1e-78	79.26	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3	[more]
RL18_IXOSC	4.6e-65	67.02	60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1	[more]

BLAST of CmaCh12G010520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFX7_CUCSA	1.7e-95	97.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1	[more]
W9QQ74_9ROSA	8.7e-95	95.70	60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1	[more]
A0A0D2TP40_GOSRA	1.5e-94	95.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1	[more]
A0A061F4C5_THECC	4.3e-94	95.19	Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1	[more]
A0A0D2P954_GOSRA	5.6e-94	94.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G091200 PE=4 SV=1	[more]

BLAST of CmaCh12G010520.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27850.1	3.0e-91	87.70	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	6.8e-91	87.17	ribosomal protein L18	[more]
AT2G47570.1	5.1e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of CmaCh12G010520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070222\|ref\|XP_008454015.1\|	5.0e-96	98.40	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo]	[more]
gi\|449454059\|ref\|XP_004144773.1\|	2.5e-95	97.86	PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus]	[more]
gi\|703068658\|ref\|XP_010088293.1\|	1.2e-94	95.70	60S ribosomal protein L18-3 [Morus notabilis]	[more]
gi\|823197185\|ref\|XP_012434195.1\|	2.1e-94	95.72	PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii]	[more]
gi\|659099453\|ref\|XP_008450608.1\|	3.6e-94	95.72	PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000039	Ribosomal_L18e
IPR021131	Ribosomal_L18e/L15P

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G010520	CmaCh12G010520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G010520.1	CmaCh12G010520.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G010520.1.three_prime_UTR.1	CmaCh12G010520.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G010520.1.CDS.5	CmaCh12G010520.1.CDS.5	CDS
CmaCh12G010520.1.CDS.4	CmaCh12G010520.1.CDS.4	CDS
CmaCh12G010520.1.CDS.3	CmaCh12G010520.1.CDS.3	CDS
CmaCh12G010520.1.CDS.2	CmaCh12G010520.1.CDS.2	CDS
CmaCh12G010520.1.CDS.1	CmaCh12G010520.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G010520.1.five_prime_UTR.1	CmaCh12G010520.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G010520.1.exon.5	CmaCh12G010520.1.exon.5	exon
CmaCh12G010520.1.exon.4	CmaCh12G010520.1.exon.4	exon
CmaCh12G010520.1.exon.3	CmaCh12G010520.1.exon.3	exon
CmaCh12G010520.1.exon.2	CmaCh12G010520.1.exon.2	exon
CmaCh12G010520.1.exon.1	CmaCh12G010520.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 2..187 score: 1.8E
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 score: 1.5
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 20..139 score: 4.97
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 21..139 score: 4.0