CmaCh12G001550.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G001550.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BAG family molecular chaperone regulator 3
Location	Cma_Chr12 : 679891 .. 681316 (+)
Sequence length	1310

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAAACACAAGAAAAAACAACATAGCCCATTTAGAGCCATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGACCCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCTTTCGATTGGCAACGATGTCTTGACATTCAGGTGTTGCTATATATACAATTTTCTTTTCAACATCGTTTATCTTAATGTAAATTTATCATAATCTATTAGTTTAAGCTTTTGAGCCTAATTGGTTATTGGTACTAATTCTTTTTTAGTCAGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGGGACAAGCTTGATATAGACGATGACGTCGAGGGAGATGAAAGCAACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAATCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGTTAAAACGCCGGTGCTACCTTTCTTGGTAAAGTGGTAATTATAATTAAAACTTTCCTTCTTTAATTTGTGTTATTGTCATCAACTTTTTTTAAAAAAATTATATGGGGAGGTTTGTAATATGTAAATATACAAATTCATGTTTTTATTTGTTATAAAAACGTCAAAAACGTTCCTTCAAATTGGTTTGTCGGTGAAAGACGAGAAAGAAAAACGAAATATTTCGATACAATTCAATTCTCTTTGATGTGAAAAAACGAAGCTCCATGCTACCTTCCTACATATTTATAACGGGCAGACTAAAACCTACCTGATTTTTCTTATATATCTCGATCTTTCTCGTTTCTCGTAGATGTAAGAACAATATTTGCACTCTCAGTAATCATCTCGAGTACTTTACATAGTTATCAACGAATTATTAGGGTTTAGACTTACTCCGTGCAATGCCATATTCCACTGTTAAGCCATTAGTAATCGTAAGAGCACTGCAAAACAATTCACAGATAACTCGAGATGGGTACGTGTTTATCTTTCTTCATTACACTATGCACACTTGTCGAAGTTCTTGTTAAACGTAGAGTAAATCATATTTGTGTATAGTAAGATAATCTAGTGATTTACTAGTTTGTTACCAAATCTATGATTTACTGGTTTGTTACCAAATATATGATTTCATAGTTATTTGGTTTGTTACCAAATCTATGATTTCATAGCTTT

mRNA sequence

ATGTCCCAAACACAAGAAAAAACAACATAGCCCATTTAGAGCCATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGACCCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCTTTCGATTGGCAACGATGTCTTGACATTCAGTCAGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGGGACAAGCTTGATATAGACGATGACGTCGAGGGAGATGAAAGCAACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAATCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGTTAAAACGCCGGTGCTACCTTTCTTGGTAAAGTGGTAATTATAATTAAAACTTTCCTTCTTTAATTTGTGTTATTGTCATCAACTTTTTTTAAAAAAATTATATGGGGAGGTTTGTAATATGTAAATATACAAATTCATGTTTTTATTTGTTATAAAAACGTCAAAAACGTTCCTTCAAATTGGTTTGTCGGTGAAAGACGAGAAAGAAAAACGAAATATTTCGATACAATTCAATTCTCTTTGATGTGAAAAAACGAAGCTCCATGCTACCTTCCTACATATTTATAACGGGCAGACTAAAACCTACCTGATTTTTCTTATATATCTCGATCTTTCTCGTTTCTCGTAGATGTAAGAACAATATTTGCACTCTCAGTAATCATCTCGAGTACTTTACATAGTTATCAACGAATTATTAGGGTTTAGACTTACTCCGTGCAATGCCATATTCCACTGTTAAGCCATTAGTAATCGTAAGAGCACTGCAAAACAATTCACAGATAACTCGAGATGGGTACGTGTTTATCTTTCTTCATTACACTATGCACACTTGTCGAAGTTCTTGTTAAACGTAGAGTAAATCATATTTGTGTATAGTAAGATAATCTAGTGATTTACTAGTTTGTTACCAAATCTATGATTTACTGGTTTGTTACCAAATATATGATTTCATAGTTATTTGGTTTGTTACCAAATCTATGATTTCATAGCTTT

Coding sequence (CDS)

ATGGTTCCCTTTCAATCCCACCCTTCTTCTCTAAATGACAAGAGATCAGAAGTTCGAGACCCTTCCGAGAATTTAGCAAAGAAGAGGAAGTGGGAACAACCGTTGCAACCGCCACAGATCAATTCCATATTCGATATCGAGCTTCACCTCGAAACTCCGTTACCTTTCGATTGGCAACGATGTCTTGACATTCAGTCAGGGAAGATACATTTCTATAACACGACGACTCAGAAGAGAACGTCGAAGGATCCAAGGGACAAGCTTGATATAGACGATGACGTCGAGGGAGATGAAAGCAACGAGGACATGAGTTTGGACCTCGAGCTCAACTTGACATGCGAATCGCTCGACAAGAACAACAATCAAACAACACAAGGAGGGCGGCGAGCCATAGGTGGAATGTTCGGCTCGTCGGAAAATTACAAGCAGCAAACGGAGATGGTGGCCGCCGTTTGCATGAGGTGTCACTTGTTAGTGATGATGTGTAAATCTTCGCCGGAGTGTCCTAACTGCAAATTCATAAACTCGCCGGAGCAGACCTCGCCGGCGATGTTAAAACGCCGGTGCTACCTTTCTTGGTAA

Protein sequence

MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESLDKNNNQTTQGGRRAIGGMFGSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAMLKRRCYLSW

Homology

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BLAST of CmaCh12G001550.1 vs. TrEMBL
Match: A0A0A0LNT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368900 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.9e-74
Identity = 152/208 (73.08%), Postives = 172/208 (82.69%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDK-RSEVRDPSENLAKKRKWEQPLQP-PQINSIFDIELHLETPLPFDW 60
           MVPFQSHPSSLNDK  S +++P++NLAKKRKWE+ + P P +NS+ DIELHLETPLPF W
Sbjct: 1   MVPFQSHPSSLNDKITSAIQEPADNLAKKRKWEESMIPTPPLNSVLDIELHLETPLPFYW 60

Query: 61  QRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESN-----EDMSLDLELNLTC 120
           QRCLDIQSGKIHFYN TTQKRT KDPRDKL+ DDD + +E +      DMSLDLELNLTC
Sbjct: 61  QRCLDIQSGKIHFYNMTTQKRTWKDPRDKLEKDDDDDDEEDDNRYDKNDMSLDLELNLTC 120

Query: 121 ESLDKNNN-QTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCKSSP 180
           ES++KNNN QT QG RRAI  G MFG SENY     ++ EMVAAVCMRCHLLVM+CKSSP
Sbjct: 121 ESMEKNNNHQTVQGVRRAINDGMMFGLSENYNHNNNKKAEMVAAVCMRCHLLVMLCKSSP 180

Query: 181 ECPNCKFINS-PEQTSPAMLKRRCYLSW 194
           ECPNCKF+NS PEQTSPAM KRRC+LSW
Sbjct: 181 ECPNCKFMNSPPEQTSPAMSKRRCHLSW 208

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BLAST of CmaCh12G001550.1 vs. TrEMBL
Match: E0CRK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05580 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.9e-38
Identity = 101/215 (46.98%), Postives = 125/215 (58.14%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQP---------LQPPQINSIFDIELHLE 60
           MV FQ+ P S +  R  V +  ENL+KKRKWE+           +     SIFDIEL LE
Sbjct: 1   MVSFQT-PLSPDPTRPIVSE-FENLSKKRKWEKTGTEEVFKLQSKAKSTKSIFDIELQLE 60

Query: 61  TPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNL 120
           TPLP +WQRCLDIQSG+IHFYNT T KRTS+DPR   +         S   MSL+LELNL
Sbjct: 61  TPLPLEWQRCLDIQSGQIHFYNTRTHKRTSRDPRASPE-------PPSPGPMSLELELNL 120

Query: 121 TCESLDKNNNQTTQGGRRAIGGMFGSSENYKQQT------------------EMVAAVCM 180
            C+SL +N      G   +      S E+ +++                   EMVAAVC 
Sbjct: 121 PCDSLRRNRPDDNMGKWNSGSPSHNSKESLQKKNPGGVACSPSWLAFEGDNQEMVAAVCK 180

Query: 181 RCHLLVMMCKSSPECPNCKFINSPEQTSPAMLKRR 189
           RCH+LVM+CKSSP CPNCKF++ P+QT P + KRR
Sbjct: 181 RCHMLVMLCKSSPTCPNCKFMHPPDQTPPNLFKRR 206

[Close]

BLAST of CmaCh12G001550.1 vs. TrEMBL
Match: A0A0D2QM72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 100/223 (44.84%), Postives = 124/223 (55.61%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPLQ------------PPQINSIFDIEL 60
           M+ FQ+ P S +D   +     +N +KKRK E+  Q               I S+FD+EL
Sbjct: 1   MISFQA-PLSPSDMIGKTISEFDNSSKKRKLEEDSQGDHEETSDKRSKAESIKSVFDMEL 60

Query: 61  HLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLE 120
           HLETPLP +WQRCLDIQSG+IHFYNT T KRTSKDPR   +    V        MSLDLE
Sbjct: 61  HLETPLPLEWQRCLDIQSGQIHFYNTRTHKRTSKDPRRSPEPPSPVH-------MSLDLE 120

Query: 121 LNLTCESLDKN---------NNQTTQGGRRA---------IGGM------FGSSENYKQQ 180
           LNL C+S  +          N   + G  RA          GG+          EN +Q 
Sbjct: 121 LNLPCDSSVRKVNEKDHQLFNKHNSVGPTRAGSVDKKINSSGGLTRNLSWLAVEENDQQD 180

Query: 181 TEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAMLKR 188
            EMVA VCMRCH+LVM+CKSSP CPNCKF++ P+Q  P + K+
Sbjct: 181 QEMVATVCMRCHMLVMLCKSSPACPNCKFMHPPDQGPPKLFKQ 215

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BLAST of CmaCh12G001550.1 vs. TrEMBL
Match: A0A061FG18_THECC (E3 ubiquitin-protein ligase HUWE1, putative OS=Theobroma cacao GN=TCM_034911 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-36
Identity = 94/212 (44.34%), Postives = 122/212 (57.55%), Query Frame = 1


Query: 13  DKRSEVRDPSENLAKKRKWEQPL----------QPPQINSIFDIELHLETPLPFDWQRCL 72
           D R    D  EN +KKRK ++P           +     S+FD+ELHLETPLP +WQRCL
Sbjct: 11  DMRKTTPDQLENSSKKRKLDEPQGDEETFEKRSKAASTKSVFDMELHLETPLPLEWQRCL 70

Query: 73  DIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESL------ 132
           DIQSG+IHFYNT T  RT KDPR   +         S   MSLDLELNL C+S+      
Sbjct: 71  DIQSGQIHFYNTRTHTRTCKDPRRSPE-------PPSPRHMSLDLELNLPCDSVRKTNAT 130

Query: 133 -----DKNNNQTTQGGR-----RAIGGMFGSS-------ENYKQQTEMVAAVCMRCHLLV 192
                DK+N+ + +         + GG+   S       E+ ++Q EMVA VCMRCH+LV
Sbjct: 131 DHHQFDKHNSVSPRSDSVDKKINSTGGLTTQSLSWLAVEEDDQKQQEMVATVCMRCHMLV 190

[Close]

BLAST of CmaCh12G001550.1 vs. TrEMBL
Match: A0A0D2S760_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 94/201 (46.77%), Postives = 114/201 (56.72%), Query Frame = 1


Query: 23  ENLAKKRKWEQPLQ------------PPQINSIFDIELHLETPLPFDWQRCLDIQSGKIH 82
           +N +KKRK E+  Q               I S+FD+ELHLETPLP +WQRCLDIQSG+IH
Sbjct: 10  DNSSKKRKLEEDSQGDHEETSDKRSKAESIKSVFDMELHLETPLPLEWQRCLDIQSGQIH 69

Query: 83  FYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESLDKN---------NN 142
           FYNT T KRTSKDPR   +    V        MSLDLELNL C+S  +          N 
Sbjct: 70  FYNTRTHKRTSKDPRRSPEPPSPVH-------MSLDLELNLPCDSSVRKVNEKDHQLFNK 129

Query: 143 QTTQGGRRA---------IGGM------FGSSENYKQQTEMVAAVCMRCHLLVMMCKSSP 188
             + G  RA          GG+          EN +Q  EMVA VCMRCH+LVM+CKSSP
Sbjct: 130 HNSVGPTRAGSVDKKINSSGGLTRNLSWLAVEENDQQDQEMVATVCMRCHMLVMLCKSSP 189

[Close]

BLAST of CmaCh12G001550.1 vs. TAIR10
Match: AT4G08910.1 (AT4G08910.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 136 GSSENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAML 186
           G     + + EMVA VCM+CH+LVM+CK+SP CPNCKF++SPE TS ++L
Sbjct: 154 GDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHSPEDTSLSLL 203

[Close]

BLAST of CmaCh12G001550.1 vs. TAIR10
Match: AT1G78170.1 (AT1G78170.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 57/196 (29.08%), Postives = 91/196 (46.43%), Query Frame = 1


Query: 14  KRSEVRDPSENLAKKRKWEQPLQPPQINSIFDIELHLETPLPFDWQRCLDIQSGKIHFYN 73
           K+S+  D S++       E+P      +  FD ELHL TPLP DWQ        K +   
Sbjct: 28  KKSKQEDQSQSTLFN---ERPKSESMRSITFDFELHLHTPLPSDWQT-------KGYSRT 87

Query: 74  TTTQKRTSKDP----RDKLDIDDDVE----GDESNEDMSLDLELNLTCESLDKNNNQT-T 133
           +   +   KDP    + K+ +D ++     G  S          ++  E++  +  +  T
Sbjct: 88  SDEHRAYPKDPVIFGQPKMSLDLELNLSPSGSPSRTTTKKYESSSIHNETVSSSKIKVLT 147

Query: 134 QGGRRAIGG-----------MFGSSEN---YKQQTEMVAAVCMRCHLLVMMCKSSPECPN 187
              +++I G             G  +N   +K Q EMV  VCM+CH+LVM+C S+P CPN
Sbjct: 148 NTSKKSIIGTGLSRSPSWLAFEGGDDNDVDHKGQ-EMVTTVCMKCHMLVMLCTSTPVCPN 207

[Close]

BLAST of CmaCh12G001550.1 vs. TAIR10
Match: AT1G22250.1 (AT1G22250.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 36/119 (30.25%), Postives = 57/119 (47.90%), Query Frame = 1


Query: 76  TQKRTSKDPRDKLDIDDDVEGDESNEDMSLDLELNLTCESLDKNNNQTTQGGRRAIGGMF 135
           TQ  T +D R  LD++ ++    S+      +E     +   K         ++   G  
Sbjct: 73  TQSETFEDHRTDLDLNLNLYSSSSSSVKKTIMEK----DECSKGGTVIISPSKKVRSGDI 132

Query: 136 GSS-------------ENYKQQTEMVAAVCMRCHLLVMMCKSSPECPNCKFINSPEQTS 182
           G S             +N K+Q EM+  VCM+CH+LVM+CKS+  CPNCKF++  + +S
Sbjct: 133 GLSRSPSWLAFEGDDDDNQKKQ-EMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSS 186

[Close]

BLAST of CmaCh12G001550.1 vs. NCBI nr
Match: gi|659088139|ref|XP_008444823.1| (PREDICTED: uncharacterized protein LOC103488058 [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-74
Identity = 153/211 (72.51%), Postives = 172/211 (81.52%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPL--QPPQINSIFDIELHLETPLPFDW 60
           MVPFQSHPSSLNDK S +++P++NLAKKRKWE+ +   PP +NS+ DIELHLETPLPF W
Sbjct: 1   MVPFQSHPSSLNDKTSAIQEPADNLAKKRKWEESMVPTPPPLNSVLDIELHLETPLPFYW 60

Query: 61  QRCLDIQSGKIHFYNTTTQKRTSKDPRDKL----DIDDDVEGDESN----EDMSLDLELN 120
           QRCLDIQSGKIHFYN TTQKRT +DPRDKL    D DDD EG + +     DMSLDLELN
Sbjct: 61  QRCLDIQSGKIHFYNMTTQKRTWRDPRDKLVDKDDDDDDEEGKDDDCYDKNDMSLDLELN 120

Query: 121 LTCESLDK-NNNQTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCK 180
           LTCES+DK NNNQT QG RRAI  G +FG SENY     ++ EMVAAVCMRCHLLVM+CK
Sbjct: 121 LTCESMDKNNNNQTVQGVRRAINNGMVFGLSENYNNNNNKKAEMVAAVCMRCHLLVMLCK 180

Query: 181 SSPECPNCKFINS-PEQTSPAMLKRRCYLSW 194
           SSPECPNCKF+NS PEQTSPAM KRRC+LSW
Sbjct: 181 SSPECPNCKFMNSPPEQTSPAMSKRRCHLSW 211

[Close]

BLAST of CmaCh12G001550.1 vs. NCBI nr
Match: gi|449469873|ref|XP_004152643.1| (PREDICTED: uncharacterized protein LOC101203360 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 5.6e-74
Identity = 152/208 (73.08%), Postives = 172/208 (82.69%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDK-RSEVRDPSENLAKKRKWEQPLQP-PQINSIFDIELHLETPLPFDW 60
           MVPFQSHPSSLNDK  S +++P++NLAKKRKWE+ + P P +NS+ DIELHLETPLPF W
Sbjct: 1   MVPFQSHPSSLNDKITSAIQEPADNLAKKRKWEESMIPTPPLNSVLDIELHLETPLPFYW 60

Query: 61  QRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESN-----EDMSLDLELNLTC 120
           QRCLDIQSGKIHFYN TTQKRT KDPRDKL+ DDD + +E +      DMSLDLELNLTC
Sbjct: 61  QRCLDIQSGKIHFYNMTTQKRTWKDPRDKLEKDDDDDDEEDDNRYDKNDMSLDLELNLTC 120

Query: 121 ESLDKNNN-QTTQGGRRAI--GGMFGSSENY----KQQTEMVAAVCMRCHLLVMMCKSSP 180
           ES++KNNN QT QG RRAI  G MFG SENY     ++ EMVAAVCMRCHLLVM+CKSSP
Sbjct: 121 ESMEKNNNHQTVQGVRRAINDGMMFGLSENYNHNNNKKAEMVAAVCMRCHLLVMLCKSSP 180

Query: 181 ECPNCKFINS-PEQTSPAMLKRRCYLSW 194
           ECPNCKF+NS PEQTSPAM KRRC+LSW
Sbjct: 181 ECPNCKFMNSPPEQTSPAMSKRRCHLSW 208

[Close]

BLAST of CmaCh12G001550.1 vs. NCBI nr
Match: gi|470132092|ref|XP_004301920.1| (PREDICTED: uncharacterized protein LOC101299013 [Fragaria vesca subsp. vesca])

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 98/203 (48.28%), Postives = 126/203 (62.07%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKWEQPLQPPQIN-------------SIFDIE 60
           MV FQ+ P S N KRS + D SEN  KKRKW+ P    +++             S FD+E
Sbjct: 1   MVSFQAQPLSPNQKRS-ITDDSENSCKKRKWDDPFPFLELDKRSKPAADQIRPKSFFDVE 60

Query: 61  LHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLDL 120
           LHLETPLP +WQRCLDIQSG+IHFYNT TQ +TS+DPR         E   +N  MSLDL
Sbjct: 61  LHLETPLPLEWQRCLDIQSGQIHFYNTRTQMKTSRDPRRSTT----PEPPSTNHHMSLDL 120

Query: 121 ELNLTCESLDKNNNQTTQGGRRAI----GGMFGSSENYKQQTEMVAAVCMRCHLLVMMCK 180
           ELNL C+S   ++ + +    RA+        G   ++ Q  EMVA VCMRCH+LVM+CK
Sbjct: 121 ELNLRCDS-QPHHPEISPNSFRALFKNNSSRLGLELDHDQ--EMVATVCMRCHMLVMLCK 180

Query: 181 SSPECPNCKFINSPEQTSPAMLK 187
           SSP CPNCK++++P+Q+     K
Sbjct: 181 SSPACPNCKYMHTPDQSPSTPFK 195

[Close]

BLAST of CmaCh12G001550.1 vs. NCBI nr
Match: gi|694434618|ref|XP_009344523.1| (PREDICTED: uncharacterized protein LOC103936414 [Pyrus x bretschneideri])

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 100/226 (44.25%), Postives = 139/226 (61.50%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKW------------EQPLQPPQI--NSIFDI 60
           M+ FQ+HP S N K++ + D SEN +KKRKW            E+  + PQ   NS+FDI
Sbjct: 1   MLSFQAHPLSPNQKKT-IPD-SENSSKKRKWDDEPYVNIEQLSEKRSKVPQSKPNSLFDI 60

Query: 61  ELHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLD 120
           ELHLETPLP +WQRCLDIQSG+IHFYNT TQ +TS+DPR   +       D  +  MSLD
Sbjct: 61  ELHLETPLPLEWQRCLDIQSGQIHFYNTRTQMKTSRDPRRSPEPPTSPAADHHHHHMSLD 120

Query: 121 LELNL-TCESLDKNNNQTTQGGRRAIGGMFGSSE----------------NYKQQTEMVA 180
           LELNL +C+    N++ +T     ++  +F  S                 + +QQ EMVA
Sbjct: 121 LELNLRSCDQSRANSDIST----HSLSDLFMESHRPIQKNPNNLGFPVDCHQQQQQEMVA 180

Query: 181 AVCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAM--LKRRCYLSW 194
            VC++CH+LVM+C+SSP CPNCK++++P+Q+ P +   K +C  S+
Sbjct: 181 TVCIKCHMLVMLCRSSPACPNCKYMHAPDQSPPTLFNFKPKCTSSF 220

[Close]

BLAST of CmaCh12G001550.1 vs. NCBI nr
Match: gi|657942393|ref|XP_008374058.1| (PREDICTED: uncharacterized protein LOC103437334 [Malus domestica])

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 96/214 (44.86%), Postives = 134/214 (62.62%), Query Frame = 1


Query: 1   MVPFQSHPSSLNDKRSEVRDPSENLAKKRKW------------EQPLQPPQI--NSIFDI 60
           M+ FQ+HP S N K++ + D SEN +KKRKW            E+  + PQ   NS+FDI
Sbjct: 1   MLSFQAHPLSPNQKKT-IPD-SENSSKKRKWDDLPYVNIEQLSEKRSKVPQSKPNSLFDI 60

Query: 61  ELHLETPLPFDWQRCLDIQSGKIHFYNTTTQKRTSKDPRDKLDIDDDVEGDESNEDMSLD 120
           ELHLETPLP +WQRCLDIQSG+IHFYNT TQ +TS+DPR   +       D  +  MSLD
Sbjct: 61  ELHLETPLPLEWQRCLDIQSGQIHFYNTRTQMKTSRDPRRSPEPPTSPAADHHHHHMSLD 120

Query: 121 LELNL-TCESLDKNNNQTTQGGRRAIGGMFGSS---------------ENYKQQTEMVAA 180
           LELNL +C+    N++ +T     ++  +F  S               +++  Q EMVA 
Sbjct: 121 LELNLRSCDQSRANSDIST----HSLSDLFMESHRPTKKNPNNLGFPFDHHHHQQEMVAT 180

Query: 181 VCMRCHLLVMMCKSSPECPNCKFINSPEQTSPAM 185
           VC++CH+LVM+C+SSP CPNCK++++P+Q+ P +
Sbjct: 181 VCLKCHMLVMLCRSSPXCPNCKYMHAPDQSPPTL 208

The following BLAST results are available for this feature:

BLAST of CmaCh12G001550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh12G001550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNT8_CUCSA	3.9e-74	73.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368900 PE=4 SV=1	[more]
E0CRK2_VITVI	5.9e-38	46.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05580 PE=4 SV=...	[more]
A0A0D2QM72_GOSRA	1.4e-36	44.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1	[more]
A0A061FG18_THECC	7.2e-36	44.34	E3 ubiquitin-protein ligase HUWE1, putative OS=Theobroma cacao GN=TCM_034911 PE=...	[more]
A0A0D2S760_GOSRA	1.2e-35	46.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1	[more]

BLAST of CmaCh12G001550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08910.1	1.3e-12	58.00	unknown protein	[more]
AT1G78170.1	1.6e-10	29.08	unknown protein	[more]
AT1G22250.1	1.4e-06	30.25	unknown protein	[more]

BLAST of CmaCh12G001550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088139\|ref\|XP_008444823.1\|	1.5e-74	72.51	PREDICTED: uncharacterized protein LOC103488058 [Cucumis melo]	[more]
gi\|449469873\|ref\|XP_004152643.1\|	5.6e-74	73.08	PREDICTED: uncharacterized protein LOC101203360 [Cucumis sativus]	[more]
gi\|470132092\|ref\|XP_004301920.1\|	2.0e-39	48.28	PREDICTED: uncharacterized protein LOC101299013 [Fragaria vesca subsp. vesca]	[more]
gi\|694434618\|ref\|XP_009344523.1\|	1.7e-38	44.25	PREDICTED: uncharacterized protein LOC103936414 [Pyrus x bretschneideri]	[more]
gi\|657942393\|ref\|XP_008374058.1\|	3.8e-38	44.86	PREDICTED: uncharacterized protein LOC103437334 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G001550	CmaCh12G001550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G001550.1	CmaCh12G001550.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G001550.1.exon.1	CmaCh12G001550.1.exon.1	exon
CmaCh12G001550.1.exon.2	CmaCh12G001550.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G001550.1.five_prime_UTR.1	CmaCh12G001550.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G001550.1.CDS.1	CmaCh12G001550.1.CDS.1	CDS
CmaCh12G001550.1.CDS.2	CmaCh12G001550.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G001550.1.three_prime_UTR.1	CmaCh12G001550.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	PROFILE	PS50020	WW_DOMAIN_2	coord: 52..86 score: 8
IPR001202	WW domain	unknown	SSF51045	WW domain	coord: 52..86 score: 1.1
None	No IPR available	GENE3D	G3DSA:2.20.70.10		coord: 51..86 score: 4.
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 42..188 score: 9.0
None	No IPR available	PANTHER	PTHR14791:SF28	SUBFAMILY NOT NAMED	coord: 42..188 score: 9.0