CmaCh11G016650.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016650.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 10958048 .. 10958431 (-)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACGAGGTTCGATTGTTTTGTCATGGCGGTGAGCGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCATGAAGAGCTTTCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCTTCCGTTGCCGAAGGTTGAGTTGCCTCCTTTGGAAAAGCCTAAAATGCTTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAGCTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCTTGTTTTTCCTACCCTTCCAAAGGACATTCCTATTCCTTCGTTCAACCCACCACATACATCTACCATTAAACCTTGA

mRNA sequence

ATGTTGACGAGGTTCGATTGTTTTGTCATGGCGGTGAGCGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCATGAAGAGCTTTCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCTTCCGTTGCCGAAGGTTGAGTTGCCTCCTTTGGAAAAGCCTAAAATGCTTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAGCTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCTTGTTTTTCCTACCCTTCCAAAGGACATTCCTATTCCTTCGTTCAACCCACCACATACATCTACCATTAAACCTTGA

Coding sequence (CDS)

ATGTTGACGAGGTTCGATTGTTTTGTCATGGCGGTGAGCGCGAGACATCTTTTGGAGATGCCACTACCCAAGGTGCATGAAGAGCTTTCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCTTCCGTTGCCGAAGGTTGAGTTGCCTCCTTTGGAAAAGCCTAAAATGCTTGAATTTTCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTACCCGAAGTACCAGAATTGCCTAATGTGCCTAAACCTGAGCTCCCTAAGTTGCCGGAATTGACACCTCTCCCAAAGCTTGTTTTTCCTACCCTTCCAAAGGACATTCCTATTCCTTCGTTCAACCCACCACATACATCTACCATTAAACCTTGA

Protein sequence

MLTRFDCFVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPLEKPKMLEFSKPELPKLPQLPKFEVPEVPELPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPSFNPPHTSTIKP

Homology

[Close]

BLAST of CmaCh11G016650.1 vs. Swiss-Prot
Match: PRAX_BOVIN (Periaxin OS=Bos taurus GN=PRX PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-06
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 10  MAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPLEKPKMLEFSKPELPKL 69
           MAV    L E+ LPKV  E+  PEV     PE+  +P+V LP ++ PK+ E   PE+ KL
Sbjct: 455 MAVPEVRLPEVQLPKV-PEMKLPEVKLPKVPEMA-VPEVHLPEVQLPKVPEMKLPEV-KL 514

Query: 70  PQLPKFEVPEV--PE--LPNVPKPELPKLPELTPLPKLVFPTLPK----DIPIPSFNPPH 127
           P++P+  VPEV  PE  LP VP+ +LPK+PE+   P++  P +P+    ++ +P    P 
Sbjct: 515 PKVPEMAVPEVRLPEVQLPKVPEMKLPKVPEM-KCPEMKLPKVPEMAVPEVRLPEVQLPK 574

[Close]

BLAST of CmaCh11G016650.1 vs. TrEMBL
Match: A0A067EC93_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 65/135 (48.15%), Postives = 83/135 (61.48%), Query Frame = 1


Query: 14  ARHLLEMPLPKVHE--------------ELSKPEVPSLSKPELLPLPKVELPPLEKPKML 73
           ARHLLE+ LP++ +              EL K E+P LSKPEL   PKVELPPL KP++ 
Sbjct: 1   ARHLLEVALPEIPKPELPKVELSPFPKPELPKVELPPLSKPEL---PKVELPPLTKPELP 60

Query: 74  EFSKPELPKLPQLPKFEVPEVP---ELPNVPKPELPKLPELTPLPKLVFPTLPKDIP--- 128
           E  KPELPK+P+LP+F  P +P   E+P +PKPELP+LPE   +PK   P LP ++P   
Sbjct: 61  EIPKPELPKVPELPEFPKPALPKKLEVPEIPKPELPELPEFPEIPKPELPELP-ELPSFP 120

[Close]

BLAST of CmaCh11G016650.1 vs. TrEMBL
Match: A0A067E8H7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031697mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 9   VMAVSARHLLEMPLPKVHE-ELSKPEVPSLSKPELLPLPKVELPPLEKPKMLEFSKPELP 68
           + AV AR LLE  LP++ + EL K E+P LSKPEL   PKVELPPL KP++ E  KPELP
Sbjct: 25  INAVGARLLLETALPEIPKPELPKFELPPLSKPEL---PKVELPPLSKPELPEIPKPELP 84

Query: 69  KLPQLP---------KFEVPEVP--ELPNVPKPELPKLPELTPLPKLVFPTLPKDIP--- 128
           K+P+LP         K EVPE+P  ELP  P+PELP+LPE   +PK   P LP ++P   
Sbjct: 85  KVPELPEIPEPKLPKKLEVPEIPQPELPEFPEPELPELPEFPEIPKPELPNLP-ELPFFP 144

[Close]

BLAST of CmaCh11G016650.1 vs. TrEMBL
Match: M5VLD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 70/161 (43.48%), Postives = 81/161 (50.31%), Query Frame = 1


Query: 10  MAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPLEKPKMLEFSKPELP-- 69
           M   AR LLE  LP+V  EL KPE+P L KPEL  LPK ELP L KP++    KPELP  
Sbjct: 1   MVAGARFLLETSLPQV-PELPKPELPPLHKPELPQLPKPELPQLPKPELPTLPKPELPTL 60

Query: 70  ---KLPQLPKFEVPEVPELPNVPK-------------------------------PELPK 125
              +LP LPK ++P VP +P +PK                               PELPK
Sbjct: 61  PKPELPTLPKPKLPPVPHVPTLPKPEGLKLAEEPHVPELPKPELPPRPNFPTLPKPELPK 120

[Close]

BLAST of CmaCh11G016650.1 vs. TrEMBL
Match: A0A059BAU3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00975 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 11  AVSARHLLEMPLPKVHEELSKPE------VPSLSKPELLPLPKVELPP---LEKPKMLEF 70
           +V AR LLE+ LP+V  EL KPE      +PSL KPEL  LPKVELP    L KP++   
Sbjct: 26  SVEARQLLELALPEV-PELPKPELPHLPDIPSLPKPELPSLPKVELPSVPELPKPELPTI 85

Query: 71  SKPELPKLPQLPKFEVPEVPELPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPSFNPPH 126
            KPELP++P+LPK E P +P++ ++PKPELP++PE+  LPK   P LP    IPS   P 
Sbjct: 86  PKPELPEVPELPKPESPHLPDIVSLPKPELPEVPEVPELPKPELPHLP---DIPSLPKPE 145

[Close]

BLAST of CmaCh11G016650.1 vs. TrEMBL
Match: A0A059BBD0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00980 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 1


Query: 12  VSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVEL---PPLEKPKMLEFSKPELPK 71
           V AR LLE+ LP+V E    P++PSL KPE   LPKVEL   P L KP++    KPELP+
Sbjct: 27  VEARQLLELALPEVPELPHLPDIPSLPKPEFPSLPKVELPSVPELPKPELPTIPKPELPE 86

Query: 72  LPQLPKFEV-----------PEVPELPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPS 117
           +P+LPK E+           PE+PE+P +PKPELP +P++  LPK   P+LPK + +PS
Sbjct: 87  VPELPKPEMPHLPDIVSLPKPELPEVPELPKPELPHIPDIPSLPKPELPSLPK-VELPS 144

[Close]

BLAST of CmaCh11G016650.1 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 23  PKVHE----ELSK-PEVPSLSKPELLPLPKVELPPL-EKPKMLEFSKPELPKLPQLPKFE 82
           PKV E    EL K PEVP L  P++  + K ELP + E PKM E  KPELPKLP++PK E
Sbjct: 189 PKVPEIPKPELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLE 248

Query: 83  VPEVPELPNVPKPELPKLPELTPLPKLVFPTLPK 111
            P+VPE   + KPELPK+PEL  +P++  P LPK
Sbjct: 249 APKVPE---IQKPELPKMPELPKMPEIQKPELPK 279

[Close]

BLAST of CmaCh11G016650.1 vs. TAIR10
Match: AT5G09520.1 (AT5G09520.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-11
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 10  MAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPLEKPKMLEFSKPELPKL 69
           ++V AR LLE P P++      P  P L KPE+  LP  E P LE PK+ E  KPE+PKL
Sbjct: 28  VSVGARRLLEEPKPEI------PTFPELPKPEMPKLP--EFPKLELPKLPEIPKPEMPKL 87

Query: 70  PQLPKFEV---PEVPELPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPSFNPP 121
           P++ K E+   PE+P++P  PK + PKLPE   LPK      P++  +P+F  P
Sbjct: 88  PEIQKPELPTFPELPKMPEFPKFDFPKLPE---LPK------PEETKVPAFTMP 124

[Close]

BLAST of CmaCh11G016650.1 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-32
Identity = 95/179 (53.07%), Postives = 107/179 (59.78%), Query Frame = 1


Query: 1   MLTRFDCFVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPL------E 60
           M+  FD  +M+VSARHLLE PLP V EEL KPE+P+L KPEL PLPKVELPPL      E
Sbjct: 19  MMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPELPPLPKVELPPLPHLPPLE 78

Query: 61  KPKMLEFSKPELPKLP-----------------QLPKFEV------------PE------ 120
           KPK+ E  KPELPKLP                  +PKF++            PE      
Sbjct: 79  KPKVPELPKPELPKLPELPKVPNFDHSKVPEVPTIPKFDLPKLAEVSDHLPKPELPKLPE 138

Query: 121 -----------VPELPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPSFNPPHTSTIKP 128
                      +PELPN+PKPELPKLPEL PLPK V PTLPKDIP PSFNPPHT+T  P
Sbjct: 139 LPSVPKPELPKLPELPNIPKPELPKLPELPPLPKPVLPTLPKDIPFPSFNPPHTTTTSP 197

[Close]

BLAST of CmaCh11G016650.1 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 92/192 (47.92%), Postives = 108/192 (56.25%), Query Frame = 1


Query: 1   MLTRFDCFVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPL------E 60
           ++  FD F+M  SARHLLE PLPKV EEL K E+P+L+KPEL PLPK ELPPL      E
Sbjct: 20  IMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPTLAKPELPPLPKFELPPLPHLPPLE 79

Query: 61  KPKMLEFSKPEL-----------------PKLPQLPKF---------------------- 120
           KPK+ E SKPEL                 P++P +PKF                      
Sbjct: 80  KPKLPELSKPELPKLPELPKVPNLDLSKIPQVPSVPKFDLPKLSEVSNPPQSELPKSPEL 139

Query: 121 ------EVPEVPELPNVPKPEL--------------PKLPELTPLPKLVFPTLPKDIPIP 128
                 E+P++PELPNVPKPEL              PKLPEL+PLPK V PTLPKD+P P
Sbjct: 140 SNGLKPELPKLPELPNVPKPELPKLPELPNVPKPELPKLPELSPLPKPVLPTLPKDMPFP 199

[Close]

BLAST of CmaCh11G016650.1 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 8.0e-29
Identity = 85/157 (54.14%), Postives = 96/157 (61.15%), Query Frame = 1


Query: 8   FVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPL------EKPKMLEF 67
           F M  SARHLLE PLPKV EEL KPE+P+L KP+L PLPK ELPPL      EKPK+ E 
Sbjct: 26  FFMTASARHLLETPLPKVPEELPKPEMPTLPKPQLPPLPKFELPPLPHLPPLEKPKLPEL 85

Query: 68  SKPELPKLPQLPKF-------------------------------EVPEVPELPNVPKPE 127
            K ELPK P+LPK                                E+P++PELPNVPKPE
Sbjct: 86  PKYELPKFPELPKVPSFDLSKIPEVPSLPKFDISKLPEVSNPPKSELPKLPELPNVPKPE 145

[Close]

BLAST of CmaCh11G016650.1 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 88/175 (50.29%), Postives = 101/175 (57.71%), Query Frame = 1


Query: 5   FDCFVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVELPPL------EKPKM 64
           FD  +M+VSARHLLE P+P   E L KPE+P+L K EL PLPKVELPPL      EKPK+
Sbjct: 24  FDFLIMSVSARHLLETPIPHGPEGLPKPEIPTLPKSELPPLPKVELPPLPHLPPLEKPKV 83

Query: 65  LEFSKPELPKLPQLPKF--------------------------------EVPEVPELPNV 124
            E  KPELPKLP+LPK                                 E+P++PELPN+
Sbjct: 84  PELPKPELPKLPELPKVPNFDHSKVPEIPTMPKFDLPKLAEVPDHLPKPELPKLPELPNL 143

Query: 125 PKPELPKL--------------PELTPLPKLVFPTLPKDIPIPSFNPPHTSTIKP 128
           PKPELPKL              PEL  LPK V P+LPKDIP PSFNPPHT+T  P
Sbjct: 144 PKPELPKLPELPNIPKPELPKVPELPSLPKPVLPSLPKDIPFPSFNPPHTTTTTP 198

[Close]

BLAST of CmaCh11G016650.1 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 9.8e-27
Identity = 87/165 (52.73%), Postives = 96/165 (58.18%), Query Frame = 1


Query: 1   MLTRFDCFVMAVSARHLLEMPLPKVHEELSKPEVPSLSKPELLPLPKVE------LPPLE 60
           ML  FD  +M V AR+LLE PLP   EEL KPE+PSL   E  PLPKVE      LPPLE
Sbjct: 19  MLMNFDISIMTVDARYLLETPLP---EELPKPEIPSLPNLEFPPLPKVELPPLPHLPPLE 78

Query: 61  KPKMLEFSKPELPKLPQL--------------------------------PKFEVPEVPE 120
           KPK+     PELPK+P L                                PK EVP++PE
Sbjct: 79  KPKL-----PELPKVPNLDHSKDSSNVPKLSEVSELPKPEFPKFPELPNFPKPEVPKLPE 138

Query: 121 LPNVPKPELPKLPELTPLPKLVFPTLPKDIPIPSFNPPHTSTIKP 128
           LPNVPKPELPKLPE  PLPK  F +LPKDIP PSFN PHT+TI P
Sbjct: 139 LPNVPKPELPKLPEFPPLPKPAFASLPKDIPYPSFNSPHTTTINP 175

The following BLAST results are available for this feature:

BLAST of CmaCh11G016650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRAX_BOVIN	7.3e-06	39.20	Periaxin OS=Bos taurus GN=PRX PE=1 SV=3	[more]

BLAST of CmaCh11G016650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EC93_CITSI	7.1e-16	48.15	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 S...	[more]
A0A067E8H7_CITSI	1.6e-15	50.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031697mg PE=4 SV=1	[more]
M5VLD6_PRUPE	1.0e-14	43.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1	[more]
A0A059BAU3_EUCGR	2.3e-14	50.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00975 PE=4 SV=1	[more]
A0A059BBD0_EUCGR	3.0e-14	48.74	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00980 PE=4 SV=1	[more]

BLAST of CmaCh11G016650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09530.1	2.3e-13	54.26	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09520.1	3.6e-11	43.86	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmaCh11G016650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110271\|ref\|XP_008455139.1\|	1.6e-32	53.07	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|659110269\|ref\|XP_008455138.1\|	1.6e-29	47.92	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|778724535\|ref\|XP_011658824.1\|	8.0e-29	54.14	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|449438230\|ref\|XP_004136892.1\|	1.8e-28	50.29	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|778724533\|ref\|XP_011658823.1\|	9.8e-27	52.73	PREDICTED: periaxin-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G016650	CmaCh11G016650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016650.1	CmaCh11G016650.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016650.1.CDS.1	CmaCh11G016650.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016650.1.exon.1	CmaCh11G016650.1.exon.1	exon