CmaCh11G012150.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDNRVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAKL
BLAST of CmaCh11G012150.1 vs. Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2) HSP 1 Score: 247.7 bits (631), Expect = 9.4e-65 Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 3.6e-64 Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2) HSP 1 Score: 242.3 bits (617), Expect = 3.9e-63 Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61 Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=2 SV=2) HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61 Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TrEMBL
Match: A0A0D2PZL7_GOSRA (Cytochrome c oxidase subunit 2 OS=Gossypium raimondii GN=B456_001G161700 PE=3 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 4.4e-85 Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TrEMBL
Match: B5KXY8_BOENI (Cytochrome c oxidase subunit 2 OS=Boehmeria nivea GN=cox2 PE=3 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 1.7e-81 Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TrEMBL
Match: R4IQM5_BUTUM (Cytochrome c oxidase subunit 2 OS=Butomus umbellatus GN=cox2 PE=3 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 8.8e-78 Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TrEMBL
Match: A0A0U1YIQ9_BRANI (Cytochrome c oxidase subunit 2 OS=Brassica nigra GN=cox2-1 PE=3 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 3.7e-76 Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TrEMBL
Match: A0A023VX25_BRAJU (Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 3.1e-75 Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. TAIR10
Match: ATMG00160.1 (ATMG00160.1 cytochrome oxidase 2) HSP 1 Score: 250.0 bits (637), Expect = 1.1e-66 Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. NCBI nr
Match: gi|1009175132|ref|XP_015868714.1| (PREDICTED: uncharacterized protein LOC107406125 [Ziziphus jujuba]) HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86 Identity = 158/170 (92.94%), Postives = 164/170 (96.47%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. NCBI nr
Match: gi|823127461|ref|XP_012436100.1| (PREDICTED: cytochrome c oxidase subunit 2 [Gossypium raimondii]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. NCBI nr
Match: gi|763742242|gb|KJB09741.1| (hypothetical protein B456_001G161700 [Gossypium raimondii]) HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85 Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. NCBI nr
Match: gi|157102082|gb|ABV23661.1| (cytochrome oxidase subunit 2 [Boehmeria nivea]) HSP 1 Score: 310.1 bits (793), Expect = 2.5e-81 Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 1
BLAST of CmaCh11G012150.1 vs. NCBI nr
Match: gi|511782605|ref|YP_008080926.1| (cytochrome oxidase subunit 2 (mitochondrion) [Butomus umbellatus]) HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77 Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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