CmaCh11G012150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome c oxidase subunit 2
LocationCma_Chr11 : 7648977 .. 7649492 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG

mRNA sequence

ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG

Coding sequence (CDS)

ATGGACAAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTTACTCACTTTTGACAGTTATATGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCGGCAAAACCTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAATTGGGCTGTACCTTCCTCAGGTATCAAATGTGATGTTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAATATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCTCACCACTCGGGGTGCAAGCCACCCAAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTATAG

Protein sequence

MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDNRVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAKL
Homology
[Close]
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 9.4e-65
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQSRLLEVDN
Sbjct: 106 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 165

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVTPADVPH+WAVPS G+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 166 RVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 225

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 226 GTNHAFT 232

[Close]
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-64
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDD ELGQSRLLEVDN
Sbjct: 108 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 167

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 168 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 227

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 228 GTNHAFT 234

[Close]
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 3.9e-63
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD V+VDPAMTIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQS LLEVDN
Sbjct: 106 MDGVLVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDN 165

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVTPADVPH+WAVPS G+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 166 RVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 225

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 226 GTNHAF 231

[Close]
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYR+YEYSDYNSSDEQ LTFDSY IPEDD ELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK H+RIIVT ADV H+WAVPSSG+KCD VPGRLNQ SILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHIRIIVTSADVLHSWAVPSSGVKCDAVPGRLNQTSILVQREGVYYGQCSEIC 226

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 227 GTNHAF 232

[Close]
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=2 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 2.2e-61
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWY TYEYSDYNSSDEQ LTFDSYMIPE+DLELGQ RLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADV H+WAVPS G+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 227 GTNHAF 232

[Close]
BLAST of CmaCh11G012150 vs. TrEMBL
Match: A0A0D2PZL7_GOSRA (Cytochrome c oxidase subunit 2 OS=Gossypium raimondii GN=B456_001G161700 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.4e-85
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPGNIGRLLSPLWLS TTRGA+HPRSKLLQRAAGAVGS+G+K
Sbjct: 227 GTNHAFTRAPGNIGRLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGSK 276

[Close]
BLAST of CmaCh11G012150 vs. TrEMBL
Match: B5KXY8_BOENI (Cytochrome c oxidase subunit 2 OS=Boehmeria nivea GN=cox2 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.7e-81
Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWY TYEYSDYNSSDEQ LTFDSYMIPEDDLELGQ RLLEVDN
Sbjct: 137 MDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDN 196

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLR IVT ADV H+WAVPS G+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 197 RVVVPAKTHLRFIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 256

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAF RAPGNIGR+ SPLWLS TTRGASHPRSKLLQRAAGAVGSRGA+
Sbjct: 257 GTNHAFMRAPGNIGRVPSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAR 306

[Close]
BLAST of CmaCh11G012150 vs. TrEMBL
Match: R4IQM5_BUTUM (Cytochrome c oxidase subunit 2 OS=Butomus umbellatus GN=cox2 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.8e-78
Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKA+GHQWY TYEYSDYNSSDE  LTFDSY IPEDD ELGQSRLLEVDN
Sbjct: 52  MDEVVVDPAITIKAVGHQWYWTYEYSDYNSSDENSLTFDSYTIPEDDPELGQSRLLEVDN 111

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK H+R+IVTPADVPH+WAVPSSG+KCD VPGR NQ SI VQREGVYYGQCSEI 
Sbjct: 112 RVVVPAKSHIRMIVTPADVPHSWAVPSSGVKCDAVPGRSNQTSISVQREGVYYGQCSEIR 171

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPG IGRLLSPLWLS TTRG   P+SKLLQRAAGAVGSRGAK
Sbjct: 172 GTNHAFTRAPGYIGRLLSPLWLSHTTRGVIPPKSKLLQRAAGAVGSRGAK 221

[Close]
BLAST of CmaCh11G012150 vs. TrEMBL
Match: A0A0U1YIQ9_BRANI (Cytochrome c oxidase subunit 2 OS=Brassica nigra GN=cox2-1 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.7e-76
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSYMIPE+DLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLL 158
           GTNHAFTRAPGNIGRLLSPLWLS TTRG   P  + +
Sbjct: 227 GTNHAFTRAPGNIGRLLSPLWLSRTTRGCEPPEKQAI 263

[Close]
BLAST of CmaCh11G012150 vs. TrEMBL
Match: A0A023VX25_BRAJU (Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.1e-75
Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWY TYEYSDYNSSDEQ LTFDSYMIPE+DLELGQSRLLEVDN
Sbjct: 183 MDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 242

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 243 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 302

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLL 158
           GTNHAFTRAPGNIGRLLSPLWLS TTRG   P  + +
Sbjct: 303 GTNHAFTRAPGNIGRLLSPLWLSRTTRGCEPPEKQAI 339

[Close]
BLAST of CmaCh11G012150 vs. TAIR10
Match: ATMG00160.1 (ATMG00160.1 cytochrome oxidase 2)

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-66
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSYMIPE+DLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 227 GTNHAFT 233

[Close]
BLAST of CmaCh11G012150 vs. NCBI nr
Match: gi|1009175132|ref|XP_015868714.1| (PREDICTED: uncharacterized protein LOC107406125 [Ziziphus jujuba])

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 158/170 (92.94%), Postives = 164/170 (96.47%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQSRLLEVDN
Sbjct: 460 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 519

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVTPADVPH+WAVPSSG+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 520 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 579

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPGNIGRLLSPLWLS TTRGASHPRSKLLQRAAGAVGSRGA+
Sbjct: 580 GTNHAFTRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAR 629

[Close]
BLAST of CmaCh11G012150 vs. NCBI nr
Match: gi|823127461|ref|XP_012436100.1| (PREDICTED: cytochrome c oxidase subunit 2 [Gossypium raimondii])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQSRLLEVDN
Sbjct: 260 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 319

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 320 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 379

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPGNIGRLLSPLWLS TTRGA+HPRSKLLQRAAGAVGS+GA+
Sbjct: 380 GTNHAFTRAPGNIGRLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGAR 429

[Close]
BLAST of CmaCh11G012150 vs. NCBI nr
Match: gi|763742242|gb|KJB09741.1| (hypothetical protein B456_001G161700 [Gossypium raimondii])

HSP 1 Score: 322.0 bits (824), Expect = 6.2e-85
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQ LTFDSY IPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLRIIVT ADVPH+WAVPSSG+KCD VPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPGNIGRLLSPLWLS TTRGA+HPRSKLLQRAAGAVGS+G+K
Sbjct: 227 GTNHAFTRAPGNIGRLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGSK 276

[Close]
BLAST of CmaCh11G012150 vs. NCBI nr
Match: gi|157102082|gb|ABV23661.1| (cytochrome oxidase subunit 2 [Boehmeria nivea])

HSP 1 Score: 310.1 bits (793), Expect = 2.5e-81
Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKAIGHQWY TYEYSDYNSSDEQ LTFDSYMIPEDDLELGQ RLLEVDN
Sbjct: 137 MDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDN 196

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK HLR IVT ADV H+WAVPS G+KCD VPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 197 RVVVPAKTHLRFIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 256

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAF RAPGNIGR+ SPLWLS TTRGASHPRSKLLQRAAGAVGSRGA+
Sbjct: 257 GTNHAFMRAPGNIGRVPSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAR 306

[Close]
BLAST of CmaCh11G012150 vs. NCBI nr
Match: gi|511782605|ref|YP_008080926.1| (cytochrome oxidase subunit 2 (mitochondrion) [Butomus umbellatus])

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 145/170 (85.29%), Postives = 154/170 (90.59%), Query Frame = 1 

Query: 1   MDKVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQLLTFDSYMIPEDDLELGQSRLLEVDN 60
           MD+VVVDPA+TIKA+GHQWY TYEYSDYNSSDE  LTFDSY IPEDD ELGQSRLLEVDN
Sbjct: 52  MDEVVVDPAITIKAVGHQWYWTYEYSDYNSSDENSLTFDSYTIPEDDPELGQSRLLEVDN 111

Query: 61  RVVLPAKPHLRIIVTPADVPHNWAVPSSGIKCDVVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK H+R+IVTPADVPH+WAVPSSG+KCD VPGR NQ SI VQREGVYYGQCSEI 
Sbjct: 112 RVVVPAKSHIRMIVTPADVPHSWAVPSSGVKCDAVPGRSNQTSISVQREGVYYGQCSEIR 171

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSLTTRGASHPRSKLLQRAAGAVGSRGAK 171
           GTNHAFTRAPG IGRLLSPLWLS TTRG   P+SKLLQRAAGAVGSRGAK
Sbjct: 172 GTNHAFTRAPGYIGRLLSPLWLSHTTRGVIPPKSKLLQRAAGAVGSRGAK 221

The following BLAST results are available for this feature:
BLAST of CmaCh11G012150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COX2_SOYBN9.4e-6591.34Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2[more]
COX2_DAUCA3.6e-6491.34Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1[more]
COX2_PEA3.9e-6390.48Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2[more]
COX2_BETVU2.2e-6188.10Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1[more]
COX2_ARATH2.2e-6188.89Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=2 SV=2[more]
BLAST of CmaCh11G012150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2PZL7_GOSRA4.4e-8591.18Cytochrome c oxidase subunit 2 OS=Gossypium raimondii GN=B456_001G161700 PE=3 SV... [more]
B5KXY8_BOENI1.7e-8188.82Cytochrome c oxidase subunit 2 OS=Boehmeria nivea GN=cox2 PE=3 SV=1[more]
R4IQM5_BUTUM8.8e-7885.29Cytochrome c oxidase subunit 2 OS=Butomus umbellatus GN=cox2 PE=3 SV=1[more]
A0A0U1YIQ9_BRANI3.7e-7687.90Cytochrome c oxidase subunit 2 OS=Brassica nigra GN=cox2-1 PE=3 SV=1[more]
A0A023VX25_BRAJU3.1e-7587.26Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=... [more]
BLAST of CmaCh11G012150 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00160.11.1e-6692.13ATMG00160.1 cytochrome oxidase 2[more]
BLAST of CmaCh11G012150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009175132|ref|XP_015868714.1|1.1e-8692.94PREDICTED: uncharacterized protein LOC107406125 [Ziziphus jujuba][more]
gi|823127461|ref|XP_012436100.1|6.2e-8591.18PREDICTED: cytochrome c oxidase subunit 2 [Gossypium raimondii][more]
gi|763742242|gb|KJB09741.1|6.2e-8591.18hypothetical protein B456_001G161700 [Gossypium raimondii][more]
gi|157102082|gb|ABV23661.1|2.5e-8188.82cytochrome oxidase subunit 2 [Boehmeria nivea][more]
gi|511782605|ref|YP_008080926.1|1.3e-7785.29cytochrome oxidase subunit 2 (mitochondrion) [Butomus umbellatus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002429CcO_II-like_C
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0016020 membrane
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004129 cytochrome-c oxidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012150.1CmaCh11G012150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002429Cytochrome c oxidase subunit II C-terminalPFAMPF00116COX2coord: 10..126
score: 1.4
IPR002429Cytochrome c oxidase subunit II C-terminalPROFILEPS50857COX2_CUAcoord: 7..147
score: 38
IPR008972CupredoxinGENE3DG3DSA:2.60.40.420coord: 7..127
score: 2.5
IPR008972CupredoxinunknownSSF49503Cupredoxinscoord: 7..127
score: 6.02
NoneNo IPR availablePRINTSPR01166CYCOXIDASEIIcoord: 78..98
score: 3.7E-42coord: 116..133
score: 3.7E-42coord: 6..25
score: 3.7E-42coord: 98..115
score: 3.7E-42coord: 54..75
score: 3.7
NoneNo IPR availablePANTHERPTHR22888CYTOCHROME C OXIDASE, SUBUNIT IIcoord: 6..126
score: 9.0
NoneNo IPR availablePANTHERPTHR22888:SF9CYTOCHROME C OXIDASE SUBUNIT 2coord: 6..126
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012150Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012150Watermelon (97103) v2cmawmbB117
CmaCh11G012150Wax gourdcmawgoB0171
CmaCh11G012150Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012150Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012150Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012150Melon (DHL92) v3.5.1cmameB108
CmaCh11G012150Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012150Watermelon (97103) v1cmawmB101
CmaCh11G012150Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012150Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012150Melon (DHL92) v3.6.1cmamedB116