CmaCh11G004260.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G004260.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sequence-specific DNA binding transcription factors, putative
Location	Cma_Chr11 : 2098744 .. 2099928 (-)
Sequence length	1017

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCATGTGCTTGCATGTGCCGTGTCTCTCTCTAAATGCCCCACCATTGCCCTGCTTTAACCACATAAATTCTTCTGTTTCTCATGCTTCCCTCTTCATTTCTCTCTCAATTTTACACTTTTCATCACTTTTTCTCAGGTATGTTCATTTTCTTCATTCTTTTTTCCTTTTTTTTTTTTAATTTTTTTTTTCTTTTTATGCACAACCCATGAATTAAATTCTCTCGGGATTTATCTTTGATTCAATCTCCGGCCAACAATTCATGGTTTTGTCTGTTTGTAATATATATGCATGTTGCAATATCAGAATGCGCAATCCCAGTTGTTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTGAAATATACACAACCTCCAACAAAAACATGACGGTCACCCAGAGAAAAAACGCCATAAAATTATCCGCAGATATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCAAGCGCTCATCGCCGCCACGTCCGTTGACGACGGAAGCCGCCTCGTGGCCGATGTCCTTCTGGGCCGGACTACTAACCCCAAAATTACGCGAATTATGTGGAGTAGTGTGAAGATTGTGAAAAGAAGCCGCCGCGTGCAGCGGATGAGAAGAAAATGTAAGAAGCCGGCGGCGGAGTTGATTGCGAAAACGTTGGCGCGGAAAAGAAGGAAAGTTCTTCGGGGATTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCATTGATAGAAGAAACCCTAGACTACATATCCGCGCTTCAAGCTCAAGTGGATGTAATGCGATGCCTTGCAACTGCATACATACCATCATCATCATGAATACCCAAACATAATTATAATCAAACCCCCCTTCTTTTGCACATATATGTAGAGCTAAATTTGAGGTTAATCTTAGTGAATAGTTTGGGATCATTTTGTGAGTTTTATGTACAAATAAATGTTTATGTAAGTTAAGACAAATATGAATTTGTTTGAAGCATGTATTTGTGTATTGAATGTGGCGGAGCATTTAGTTAGGGAAGAAGGCCAAATCCAAAGCCGGTAAGTGTTCATGCATGTTGGAAAATGAGTGTAGTTTCTTCAACATTATTATTATTATTTTTTTTTTTTTGTTTTTTTTGGAGGCTTGGCATAATGTTTTTGTTCATAAATGCTCAATCTTGG

mRNA sequence

ATGAACTCCATGTGCTTGCATGTGCCGTGTCTCTCTCTAAATGCCCCACCATTGCCCTGCTTTAACCACATAAATTCTTCTGTTTCTCATGCTTCCCTCTTCATTTCTCTCTCAATTTTACACTTTTCATCACTTTTTCTCAGAATGCGCAATCCCAGTTGTTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTGAAATATACACAACCTCCAACAAAAACATGACGGTCACCCAGAGAAAAAACGCCATAAAATTATCCGCAGATATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCAAGCGCTCATCGCCGCCACGTCCGTTGACGACGGAAGCCGCCTCGTGGCCGATGTCCTTCTGGGCCGGACTACTAACCCCAAAATTACGCGAATTATGTGGAGTAGTGTGAAGATTGTGAAAAGAAGCCGCCGCGTGCAGCGGATGAGAAGAAAATGTAAGAAGCCGGCGGCGGAGTTGATTGCGAAAACGTTGGCGCGGAAAAGAAGGAAAGTTCTTCGGGGATTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCATTGATAGAAGAAACCCTAGACTACATATCCGCGCTTCAAGCTCAAGTGGATGTAATGCGATGCCTTGCAACTGCATACATACCATCATCATCATGAATACCCAAACATAATTATAATCAAACCCCCCTTCTTTTGCACATATATGTAGAGCTAAATTTGAGGTTAATCTTAGTGAATAGTTTGGGATCATTTTGTGAGTTTTATGTACAAATAAATGTTTATGTAAGTTAAGACAAATATGAATTTGTTTGAAGCATGTATTTGTGTATTGAATGTGGCGGAGCATTTAGTTAGGGAAGAAGGCCAAATCCAAAGCCGGTAAGTGTTCATGCATGTTGGAAAATGAGTGTAGTTTCTTCAACATTATTATTATTATTTTTTTTTTTTTGTTTTTTTTGGAGGCTTGGCATAATGTTTTTGTTCATAAATGCTCAATCTTGG

Coding sequence (CDS)

ATGAACTCCATGTGCTTGCATGTGCCGTGTCTCTCTCTAAATGCCCCACCATTGCCCTGCTTTAACCACATAAATTCTTCTGTTTCTCATGCTTCCCTCTTCATTTCTCTCTCAATTTTACACTTTTCATCACTTTTTCTCAGAATGCGCAATCCCAGTTGTTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTGAAATATACACAACCTCCAACAAAAACATGACGGTCACCCAGAGAAAAAACGCCATAAAATTATCCGCAGATATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCAAGCGCTCATCGCCGCCACGTCCGTTGACGACGGAAGCCGCCTCGTGGCCGATGTCCTTCTGGGCCGGACTACTAACCCCAAAATTACGCGAATTATGTGGAGTAGTGTGAAGATTGTGAAAAGAAGCCGCCGCGTGCAGCGGATGAGAAGAAAATGTAAGAAGCCGGCGGCGGAGTTGATTGCGAAAACGTTGGCGCGGAAAAGAAGGAAAGTTCTTCGGGGATTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCATTGATAGAAGAAACCCTAGACTACATATCCGCGCTTCAAGCTCAAGTGGATGTAATGCGATGCCTTGCAACTGCATACATACCATCATCATCATGA

Protein sequence

MNSMCLHVPCLSLNAPPLPCFNHINSSVSHASLFISLSILHFSSLFLRMRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTTNPKITRIMWSSVKIVKRSRRVQRMRRKCKKPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIPSSS

Homology

[Close]

BLAST of CmaCh11G004260.1 vs. TrEMBL
Match: A0A0A0LWQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294080 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 131/184 (71.20%), Postives = 150/184 (81.52%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           M+N + LK+EF KKWMMGL+IYTT+N+NMTVT+RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 109 IAATSVDDGSRLVADVLLGR--------TTNPKITRIMWSSVKIVKRSRRV-QRMRRKCK 168
           IA +SVD+ S  VA+ +LGR         +N KITR  WSS KIVKRSRRV +R RR+ K
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYI 224
             AA  IA+ L +KR KVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMR LATAY 
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180

[Close]

BLAST of CmaCh11G004260.1 vs. TrEMBL
Match: A0A061GQA9_THECC (Sequence-specific DNA binding transcription factors, putative OS=Theobroma cacao GN=TCM_038548 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 121/270 (44.81%), Postives = 158/270 (58.52%), Query Frame = 1


Query: 1   MNSMCLHVPCLSLNAPPLPCFNHIN-----SSVSHASLFISLS------ILHFSS----- 60
           M +MCLHV CLSL  PPL  F  IN     SS+SH+SL + +S      ++HF       
Sbjct: 1   MQAMCLHVLCLSLIDPPLLSFEQINGVSAHSSLSHSSLSLYVSEPLSWILIHFLGSVERL 60

Query: 61  -----LFL--------------------RMRNPSCLKREFLKKWMMGLEIYTTSNKNMTV 120
                LFL                    RMR+P  LK+EFLKKW+MG +  ++S K+M+V
Sbjct: 61  HSLQLLFLILLSRLILALSISVQEKILARMRSPGSLKQEFLKKWIMGFQRCSSSKKSMSV 120

Query: 121 TQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTTNPKITRIMW 180
             RK AIKLSADIA+AS+R   T WS+ALIA+ S D   + + + +LG  +   I    +
Sbjct: 121 LDRKKAIKLSADIAMASARKGTTCWSRALIASASKDGSDKHLVEQILGPESERLILMKKF 180

Query: 181 S-----------SVKIVKRSRRVQRMRRKCKKPA-AELIAKTLARKRRKVLRGLVPGGEF 218
           S           S KI+KRS  ++R R+   + A A  IAK L RKR +VL+ L+PGGEF
Sbjct: 181 STGALVCSKRIRSKKILKRSCGIRRTRKCAPQAALASSIAKRLVRKRTQVLKSLIPGGEF 240

[Close]

BLAST of CmaCh11G004260.1 vs. TrEMBL
Match: V4UQX9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009640mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.0e-33
Identity = 92/178 (51.69%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           MR PS LK+EFL+KW++GL+I ++S K+M++++RK AIKLSADIA+AS+RN  T WS+AL
Sbjct: 1   MRAPSSLKQEFLRKWILGLQICSSSAKSMSISERKKAIKLSADIAMASARNGRTSWSRAL 60

Query: 109 IAATSVDDG-SRLVADVLLGRTTNPKITRIMWS-----SVKIVKRSRRV---QRMRRKCK 168
           IA+ S DD   +L    +LG     ++T+I  S       KI+K+S      +RM+R   
Sbjct: 61  IASASKDDNHGKLFVQQILGSDCE-RLTKISTSIKRLRCKKILKKSSGTIIRRRMKRIPD 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATA 218
           K  A  IAK +  KR ++L+ LVPGG FMDE+SLIEETLDYI +L+AQ+DVMR LA A
Sbjct: 121 KAVASSIAKQMVNKRTQILKSLVPGGVFMDEVSLIEETLDYILSLRAQIDVMRSLADA 177

[Close]

BLAST of CmaCh11G004260.1 vs. TrEMBL
Match: A0A067FGP7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030032mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.0e-33
Identity = 92/178 (51.69%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           MR PS LK+EFL+KW++GL+I ++S K+M++++RK AIKLSADIA+AS+RN  T WS+AL
Sbjct: 1   MRAPSSLKQEFLRKWILGLQICSSSAKSMSISERKKAIKLSADIAMASARNGRTSWSRAL 60

Query: 109 IAATSVDDG-SRLVADVLLGRTTNPKITRIMWS-----SVKIVKRSRRV---QRMRRKCK 168
           IA+ S DD   +L    +LG     ++T+I  S       KI+K+S      +RM+R   
Sbjct: 61  IASASKDDNHGKLFVQQILGSDCE-RLTKISTSIKRLRCKKILKKSSGTIIRRRMKRIPD 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATA 218
           K  A  IAK +  KR ++L+ LVPGG FMDE+SLIEETLDYI +L+AQ+DVMR LA A
Sbjct: 121 KAVASSIAKQMVNKRTQILKSLVPGGVFMDEVSLIEETLDYILSLRAQIDVMRSLADA 177

[Close]

BLAST of CmaCh11G004260.1 vs. TrEMBL
Match: F6HYP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01230 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-32
Identity = 88/179 (49.16%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           MR P+ LK+EFLKKW+MGL++ ++S K M+  +RK AIKLSAD+A+AS+RN  TRWS+AL
Sbjct: 1   MRPPTSLKKEFLKKWIMGLQLCSSSKKEMSFLERKKAIKLSADVAMASARNATTRWSRAL 60

Query: 109 IAATSVDDGSRLVADVLLGRTTNPKITRIMWSSVKIVKRSRRVQRMRRKC-----KKPAA 168
           I+  S DD ++ + + +LG   +  + R   S V   KR+R  + +R+ C     +K ++
Sbjct: 61  ISNASKDDSNKGLVECILG-PESESLKRASMSLVLCNKRNRSKKILRKSCSIRRARKSSS 120

Query: 169 EL-----IAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATA 218
           ++     IAK L +KR +VL+ LVPGG  M E SLIEETLDYI +L+AQVDVMR LA A
Sbjct: 121 QMVMASSIAKRLVKKRTQVLKSLVPGGGSMSEFSLIEETLDYILSLRAQVDVMRHLANA 178

[Close]

BLAST of CmaCh11G004260.1 vs. TAIR10
Match: AT4G30410.2 (AT4G30410.2 sequence-specific DNA binding transcription factors)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-27
Identity = 73/173 (42.20%), Postives = 108/173 (62.43%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           M+  S +  EFLKKW MGL+I+  S  N +V +RK AIKLSAD+A+AS R   T WS+AL
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 109 IAATSVDDG---SRLVADVLLGRTTNPKITRIMWSSVKIVKRSRRVQRMRRKCKKPAAEL 168
           I  T+ +D     ++++ +      N K+ +      KIV+RS+++ R + K     A  
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAA 120

Query: 169 IAKTLARKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA 218
            AK L ++R + LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Sbjct: 121 KAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of CmaCh11G004260.1 vs. TAIR10
Match: AT5G57780.1 (AT5G57780.1 EXPRESSED IN: 18 plant structures)

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-21
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKN-MTVTQRKNAIKLSADIALASSRNCATRWSQA 108
           M   + +K+EF+KKW+  L +  +S ++ + VT+RKNAI+LS+D+A+A++RN +T WS+A
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 109 LIAATSVDDGSRLVADVLLGRTTNPKITRIMWSSVKIVKRSRRVQRMRRKCK--KPAAEL 168
           LI+ +               +T N  + R      +I+K++R   RM+ +C   +     
Sbjct: 62  LISRSG-------------NKTANKPMAR------RILKKAR--NRMKNRCNILRRNGNF 121

Query: 169 IAKTLARKRRKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRCLA 216
            AKT  RKR  +L+ LVPGGE +D+   LI ETLDYI  L+AQVDVMR +A
Sbjct: 122 TAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of CmaCh11G004260.1 vs. NCBI nr
Match: gi|659086184|ref|XP_008443801.1| (PREDICTED: transcription factor bHLH147 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 6.1e-56
Identity = 131/184 (71.20%), Postives = 152/184 (82.61%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           M+NP+ LK+EFLKKWMMGL+IYTT+N+NMTV +RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 109 IAATSVDDGSRLVADVLLGR--------TTNPKITRIMWSSVKIVKRSRRV-QRMRRKCK 168
           IA +SVD+ S LVA+ +LGR         +N KITR  WSS KIVKRSRRV +R RR+ K
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYI 224
             AA  IA+ L ++R KVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMR LA+AY 
Sbjct: 121 CMAAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLASAYN 180

[Close]

BLAST of CmaCh11G004260.1 vs. NCBI nr
Match: gi|449464326|ref|XP_004149880.1| (PREDICTED: transcription factor IBH1 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.8e-55
Identity = 131/184 (71.20%), Postives = 150/184 (81.52%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           M+N + LK+EF KKWMMGL+IYTT+N+NMTVT+RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 109 IAATSVDDGSRLVADVLLGR--------TTNPKITRIMWSSVKIVKRSRRV-QRMRRKCK 168
           IA +SVD+ S  VA+ +LGR         +N KITR  WSS KIVKRSRRV +R RR+ K
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYI 224
             AA  IA+ L +KR KVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMR LATAY 
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180

[Close]

BLAST of CmaCh11G004260.1 vs. NCBI nr
Match: gi|590580096|ref|XP_007013974.1| (Sequence-specific DNA binding transcription factors, putative [Theobroma cacao])

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 121/270 (44.81%), Postives = 158/270 (58.52%), Query Frame = 1


Query: 1   MNSMCLHVPCLSLNAPPLPCFNHIN-----SSVSHASLFISLS------ILHFSS----- 60
           M +MCLHV CLSL  PPL  F  IN     SS+SH+SL + +S      ++HF       
Sbjct: 1   MQAMCLHVLCLSLIDPPLLSFEQINGVSAHSSLSHSSLSLYVSEPLSWILIHFLGSVERL 60

Query: 61  -----LFL--------------------RMRNPSCLKREFLKKWMMGLEIYTTSNKNMTV 120
                LFL                    RMR+P  LK+EFLKKW+MG +  ++S K+M+V
Sbjct: 61  HSLQLLFLILLSRLILALSISVQEKILARMRSPGSLKQEFLKKWIMGFQRCSSSKKSMSV 120

Query: 121 TQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTTNPKITRIMW 180
             RK AIKLSADIA+AS+R   T WS+ALIA+ S D   + + + +LG  +   I    +
Sbjct: 121 LDRKKAIKLSADIAMASARKGTTCWSRALIASASKDGSDKHLVEQILGPESERLILMKKF 180

Query: 181 S-----------SVKIVKRSRRVQRMRRKCKKPA-AELIAKTLARKRRKVLRGLVPGGEF 218
           S           S KI+KRS  ++R R+   + A A  IAK L RKR +VL+ L+PGGEF
Sbjct: 181 STGALVCSKRIRSKKILKRSCGIRRTRKCAPQAALASSIAKRLVRKRTQVLKSLIPGGEF 240

[Close]

BLAST of CmaCh11G004260.1 vs. NCBI nr
Match: gi|641843466|gb|KDO62366.1| (hypothetical protein CISIN_1g030032mg [Citrus sinensis])

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 92/178 (51.69%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           MR PS LK+EFL+KW++GL+I ++S K+M++++RK AIKLSADIA+AS+RN  T WS+AL
Sbjct: 1   MRAPSSLKQEFLRKWILGLQICSSSAKSMSISERKKAIKLSADIAMASARNGRTSWSRAL 60

Query: 109 IAATSVDDG-SRLVADVLLGRTTNPKITRIMWS-----SVKIVKRSRRV---QRMRRKCK 168
           IA+ S DD   +L    +LG     ++T+I  S       KI+K+S      +RM+R   
Sbjct: 61  IASASKDDNHGKLFVQQILGSDCE-RLTKISTSIKRLRCKKILKKSSGTIIRRRMKRIPD 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATA 218
           K  A  IAK +  KR ++L+ LVPGG FMDE+SLIEETLDYI +L+AQ+DVMR LA A
Sbjct: 121 KAVASSIAKQMVNKRTQILKSLVPGGVFMDEVSLIEETLDYILSLRAQIDVMRSLADA 177

[Close]

BLAST of CmaCh11G004260.1 vs. NCBI nr
Match: gi|567922968|ref|XP_006453490.1| (hypothetical protein CICLE_v10009640mg [Citrus clementina])

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 92/178 (51.69%), Postives = 125/178 (70.22%), Query Frame = 1


Query: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108
           MR PS LK+EFL+KW++GL+I ++S K+M++++RK AIKLSADIA+AS+RN  T WS+AL
Sbjct: 1   MRAPSSLKQEFLRKWILGLQICSSSAKSMSISERKKAIKLSADIAMASARNGRTSWSRAL 60

Query: 109 IAATSVDDG-SRLVADVLLGRTTNPKITRIMWS-----SVKIVKRSRRV---QRMRRKCK 168
           IA+ S DD   +L    +LG     ++T+I  S       KI+K+S      +RM+R   
Sbjct: 61  IASASKDDNHGKLFVQQILGSDCE-RLTKISTSIKRLRCKKILKKSSGTIIRRRMKRIPD 120

Query: 169 KPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATA 218
           K  A  IAK +  KR ++L+ LVPGG FMDE+SLIEETLDYI +L+AQ+DVMR LA A
Sbjct: 121 KAVASSIAKQMVNKRTQILKSLVPGGVFMDEVSLIEETLDYILSLRAQIDVMRSLADA 177

The following BLAST results are available for this feature:

BLAST of CmaCh11G004260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G004260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWQ3_CUCSA	1.2e-55	71.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294080 PE=4 SV=1	[more]
A0A061GQA9_THECC	1.4e-38	44.81	Sequence-specific DNA binding transcription factors, putative OS=Theobroma cacao...	[more]
V4UQX9_9ROSI	5.0e-33	51.69	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009640mg PE=4 SV=1	[more]
A0A067FGP7_CITSI	5.0e-33	51.69	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030032mg PE=4 SV=1	[more]
F6HYP3_VITVI	3.3e-32	49.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01230 PE=4 SV=...	[more]

BLAST of CmaCh11G004260.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30410.2	2.8e-27	42.20	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	5.2e-21	40.35	EXPRESSED IN: 18 plant structures	[more]

BLAST of CmaCh11G004260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086184\|ref\|XP_008443801.1\|	6.1e-56	71.20	PREDICTED: transcription factor bHLH147 [Cucumis melo]	[more]
gi\|449464326\|ref\|XP_004149880.1\|	1.8e-55	71.20	PREDICTED: transcription factor IBH1 [Cucumis sativus]	[more]
gi\|590580096\|ref\|XP_007013974.1\|	2.0e-38	44.81	Sequence-specific DNA binding transcription factors, putative [Theobroma cacao]	[more]
gi\|641843466\|gb\|KDO62366.1\|	7.2e-33	51.69	hypothetical protein CISIN_1g030032mg [Citrus sinensis]	[more]
gi\|567922968\|ref\|XP_006453490.1\|	7.2e-33	51.69	hypothetical protein CICLE_v10009640mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G004260	CmaCh11G004260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G004260.1	CmaCh11G004260.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G004260.1.three_prime_UTR.1	CmaCh11G004260.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G004260.1.CDS.2	CmaCh11G004260.1.CDS.2	CDS
CmaCh11G004260.1.CDS.1	CmaCh11G004260.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G004260.1.exon.2	CmaCh11G004260.1.exon.2	exon
CmaCh11G004260.1.exon.1	CmaCh11G004260.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 8..218 score: 4.8
None	No IPR available	PANTHER	PTHR33124:SF5	BHLH TRANSCRIPTION FACTOR	coord: 8..218 score: 4.8