CmaCh11G001970.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G001970.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 1006776 .. 1007295 (+)
Sequence length	349

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCAGTGAAAGGGAACAATCGGGAGCAATGGTCGAAATTTTCTTCATTCAAACAAAAATAGGCTTGTTCTTCTTCAAGTGAGCGATTTTATGCTACTTTCATTGCCAATGCCTTTCTAGTTTAAAAGTATTTGCGAACTCCTGAATTGCTCTGGCTTAATTTGATTTCTAGGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAAGCTGCAGGTAATTTGATATCTAGGTCTTGCTTTAAATTTCGTACTCTTTAGCGTAGCTTATGTAATCCTTGGGTGTATAATTAGAGATTCAGTTTTGCATAGCGATTGCCATATCCAC

mRNA sequence

ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAAGCTGCAGGTAATTTGATATCTAGGTCTTGCTTTAAATTTCGTACTCTTTAGCGTAGCTTATGTAATCCTTGGGTGTATAATTAGAGATTCAGTTTTGCATAGCGATTGCCATATCCAC

Coding sequence (CDS)

ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAA

Protein sequence

MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPSCFCGVFTVGYVYAFYGIEFSQRHARYMKQSRLEIV

Homology

[Close]

BLAST of CmaCh11G001970.1 vs. TrEMBL
Match: A0A0A0KF21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
           MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 109 MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 148

[Close]

BLAST of CmaCh11G001970.1 vs. NCBI nr
Match: gi|778717047|ref|XP_011657645.1| (PREDICTED: uncharacterized protein LOC101220918 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
          MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 1  MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 40

[Close]

BLAST of CmaCh11G001970.1 vs. NCBI nr
Match: gi|700192929|gb|KGN48133.1| (hypothetical protein Csa_6G444980 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1   MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
           MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 109 MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 148

[Close]

BLAST of CmaCh11G001970.1 vs. NCBI nr
Match: gi|659096753|ref|XP_008449269.1| (PREDICTED: uncharacterized protein LOC103491201 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 1  MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
          MD + FSTPPS KGT LKSGSI+TP  SPL+PS+ RLWRP+
Sbjct: 1  MDTQYFSTPPS-KGTNLKSGSISTPGSSPLLPSITRLWRPA 40

The following BLAST results are available for this feature:

BLAST of CmaCh11G001970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF21_CUCSA	8.0e-07	73.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444980 PE=4 SV=1	[more]

BLAST of CmaCh11G001970.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717047\|ref\|XP_011657645.1\|	1.2e-06	73.17	PREDICTED: uncharacterized protein LOC101220918 [Cucumis sativus]	[more]
gi\|700192929\|gb\|KGN48133.1\|	1.2e-06	73.17	hypothetical protein Csa_6G444980 [Cucumis sativus]	[more]
gi\|659096753\|ref\|XP_008449269.1\|	3.4e-06	70.73	PREDICTED: uncharacterized protein LOC103491201 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G001970	CmaCh11G001970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G001970.1	CmaCh11G001970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G001970.1.exon.2	CmaCh11G001970.1.exon.2	exon
CmaCh11G001970.1.exon.1	CmaCh11G001970.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G001970.1.CDS.1	CmaCh11G001970.1.CDS.1	CDS
CmaCh11G001970.1.CDS.2	CmaCh11G001970.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G001970.1.three_prime_UTR.1	CmaCh11G001970.1.three_prime_UTR.1	three_prime_UTR