CmaCh11G001970 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G001970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr11 : 1006776 .. 1007295 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCAGTGAAAGGGAACAATCGGGAGCAATGGTCGAAATTTTCTTCATTCAAACAAAAATAGGCTTGTTCTTCTTCAAGTGAGCGATTTTATGCTACTTTCATTGCCAATGCCTTTCTAGTTTAAAAGTATTTGCGAACTCCTGAATTGCTCTGGCTTAATTTGATTTCTAGGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAAGCTGCAGGTAATTTGATATCTAGGTCTTGCTTTAAATTTCGTACTCTTTAGCGTAGCTTATGTAATCCTTGGGTGTATAATTAGAGATTCAGTTTTGCATAGCGATTGCCATATCCAC

mRNA sequence

ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAAGCTGCAGGTAATTTGATATCTAGGTCTTGCTTTAAATTTCGTACTCTTTAGCGTAGCTTATGTAATCCTTGGGTGTATAATTAGAGATTCAGTTTTGCATAGCGATTGCCATATCCAC

Coding sequence (CDS)

ATGGATGCTCGGAATTTCTCGACGCCTCCTTCCTCTAAAGGAACTGCTTTGAAATCTGGAAGCATCACGACACCAAGTCTGTCGCCTCTAATTCCGTCTGTAATACGGCTATGGAGGCCGTCTTGCTTTTGTGGAGTTTTTACTGTTGGTTATGTGTATGCCTTCTATGGAATTGAGTTCTCTCAGCGACATGCACGATATATGAAACAAAGCCGGCTTGAAATTGTCTAA

Protein sequence

MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPSCFCGVFTVGYVYAFYGIEFSQRHARYMKQSRLEIV
Homology
[Close]
BLAST of CmaCh11G001970 vs. TrEMBL
Match: A0A0A0KF21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-07
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 1   MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
           MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 109 MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 148

[Close]
BLAST of CmaCh11G001970 vs. NCBI nr
Match: gi|778717047|ref|XP_011657645.1| (PREDICTED: uncharacterized protein LOC101220918 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 1  MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
          MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 1  MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 40

[Close]
BLAST of CmaCh11G001970 vs. NCBI nr
Match: gi|700192929|gb|KGN48133.1| (hypothetical protein Csa_6G444980 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 1   MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
           MD + FSTPPS KGT LKSGSITTP  SPL+PS+ RLWRP+
Sbjct: 109 MDTQYFSTPPS-KGTNLKSGSITTPGSSPLLPSITRLWRPA 148

[Close]
BLAST of CmaCh11G001970 vs. NCBI nr
Match: gi|659096753|ref|XP_008449269.1| (PREDICTED: uncharacterized protein LOC103491201 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 1  MDARNFSTPPSSKGTALKSGSITTPSLSPLIPSVIRLWRPS 42
          MD + FSTPPS KGT LKSGSI+TP  SPL+PS+ RLWRP+
Sbjct: 1  MDTQYFSTPPS-KGTNLKSGSISTPGSSPLLPSITRLWRPA 40

The following BLAST results are available for this feature:
BLAST of CmaCh11G001970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh11G001970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF21_CUCSA8.0e-0773.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444980 PE=4 SV=1[more]
BLAST of CmaCh11G001970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh11G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778717047|ref|XP_011657645.1|1.2e-0673.17PREDICTED: uncharacterized protein LOC101220918 [Cucumis sativus][more]
gi|700192929|gb|KGN48133.1|1.2e-0673.17hypothetical protein Csa_6G444980 [Cucumis sativus][more]
gi|659096753|ref|XP_008449269.1|3.4e-0670.73PREDICTED: uncharacterized protein LOC103491201 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G001970.1CmaCh11G001970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G001970CmoCh10G002410Cucurbita moschata (Rifu)cmacmoB104
CmaCh11G001970Cp4.1LG18g07790Cucurbita pepo (Zucchini)cmacpeB135
CmaCh11G001970Carg17929Silver-seed gourdcarcmaB0643
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh11G001970CmaCh10G002290Cucurbita maxima (Rimu)cmacmaB076
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G001970Cucurbita maxima (Rimu)cmacmaB127
CmaCh11G001970Cucumber (Gy14) v1cgycmaB0260
CmaCh11G001970Cucumber (Gy14) v1cgycmaB0577
CmaCh11G001970Cucumber (Gy14) v1cgycmaB0790
CmaCh11G001970Cucurbita moschata (Rifu)cmacmoB112
CmaCh11G001970Cucurbita moschata (Rifu)cmacmoB125
CmaCh11G001970Wild cucumber (PI 183967)cmacpiB086
CmaCh11G001970Wild cucumber (PI 183967)cmacpiB087
CmaCh11G001970Wild cucumber (PI 183967)cmacpiB133
CmaCh11G001970Cucumber (Chinese Long) v2cmacuB087
CmaCh11G001970Cucumber (Chinese Long) v2cmacuB088
CmaCh11G001970Cucumber (Chinese Long) v2cmacuB136
CmaCh11G001970Melon (DHL92) v3.5.1cmameB083
CmaCh11G001970Melon (DHL92) v3.5.1cmameB090
CmaCh11G001970Melon (DHL92) v3.5.1cmameB120
CmaCh11G001970Watermelon (Charleston Gray)cmawcgB119
CmaCh11G001970Watermelon (Charleston Gray)cmawcgB124
CmaCh11G001970Watermelon (Charleston Gray)cmawcgB135
CmaCh11G001970Watermelon (97103) v1cmawmB112
CmaCh11G001970Watermelon (97103) v1cmawmB120
CmaCh11G001970Watermelon (97103) v1cmawmB143
CmaCh11G001970Cucurbita pepo (Zucchini)cmacpeB105
CmaCh11G001970Cucurbita pepo (Zucchini)cmacpeB139
CmaCh11G001970Cucurbita pepo (Zucchini)cmacpeB153
CmaCh11G001970Bottle gourd (USVL1VR-Ls)cmalsiB106
CmaCh11G001970Bottle gourd (USVL1VR-Ls)cmalsiB123
CmaCh11G001970Bottle gourd (USVL1VR-Ls)cmalsiB143
CmaCh11G001970Cucumber (Gy14) v2cgybcmaB029
CmaCh11G001970Cucumber (Gy14) v2cgybcmaB030
CmaCh11G001970Cucumber (Gy14) v2cgybcmaB585
CmaCh11G001970Melon (DHL92) v3.6.1cmamedB090
CmaCh11G001970Melon (DHL92) v3.6.1cmamedB098
CmaCh11G001970Melon (DHL92) v3.6.1cmamedB128
CmaCh11G001970Silver-seed gourdcarcmaB0538
CmaCh11G001970Silver-seed gourdcarcmaB0830
CmaCh11G001970Cucumber (Chinese Long) v3cmacucB0101
CmaCh11G001970Cucumber (Chinese Long) v3cmacucB0102
CmaCh11G001970Cucumber (Chinese Long) v3cmacucB0155
CmaCh11G001970Watermelon (97103) v2cmawmbB122
CmaCh11G001970Watermelon (97103) v2cmawmbB139
CmaCh11G001970Wax gourdcmawgoB0138
CmaCh11G001970Wax gourdcmawgoB0143