CmaCh10G003610.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003610.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transmembrane-like protein
Location	Cma_Chr10 : 1666881 .. 1667461 (-)
Sequence length	496

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCACTCCACCTTGCTCGTAGTCAAAAACAGCCGGAGAGCTTTCTCTTCGCTTCTAAAATCAAAAGTCCACCGTCGTCTCCTCCTCCGCCGTCTTCCCCAAATCCGATACTCTTTCTCTGCATATCGAAGCTTCAACACCTTATTCTTTTTTCAGCTCTTGATCTCCGGTATTACAGATAAAGATGGCGTACGTGGACCATGCGTTTTCGATAGCAGACGAGGACATTGTTATGGATTCTCCGTTCCCCGTCAACAATCGACCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCGTTTTCGGCATGATTGGAATCGTCGTTGGTGCCTTCATGGCTAGCAATCGAGTCGGTGGTGATCGTGCTCACGGTACTTTTTTTTTTTTTGCCTTCCTTGTTGTTGGTTTTGCCCTAGTTCGAATGCAAATTTATGGTTCATTCTCGAAAACTTTCAGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTCATTCCAGGGTTCTACTACACGCGGATTGCCTACTATGCTTACAAGGGCTACAAGGGCTTCTCCTTTTCCAACATTCCCCCTGTCTAA

mRNA sequence

CCTCACTCCACCTTGCTCGTAGTCAAAAACAGCCGGAGAGCTTTCTCTTCGCTTCTAAAATCAAAAGTCCACCGTCGTCTCCTCCTCCGCCGTCTTCCCCAAATCCGATACTCTTTCTCTGCATATCGAAGCTTCAACACCTTATTCTTTTTTCAGCTCTTGATCTCCGGTATTACAGATAAAGATGGCGTACGTGGACCATGCGTTTTCGATAGCAGACGAGGACATTGTTATGGATTCTCCGTTCCCCGTCAACAATCGACCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCGTTTTCGGCATGATTGGAATCGTCGTTGGTGCCTTCATGGCTAGCAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTCATTCCAGGGTTCTACTACACGCGGATTGCCTACTATGCTTACAAGGGCTACAAGGGCTTCTCCTTTTCCAACATTCCCCCTGTCTAA

Coding sequence (CDS)

ATGGCGTACGTGGACCATGCGTTTTCGATAGCAGACGAGGACATTGTTATGGATTCTCCGTTCCCCGTCAACAATCGACCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCGTTTTCGGCATGATTGGAATCGTCGTTGGTGCCTTCATGGCTAGCAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTCATTCCAGGGTTCTACTACACGCGGATTGCCTACTATGCTTACAAGGGCTACAAGGGCTTCTCCTTTTCCAACATTCCCCCTGTCTAA

Protein sequence

MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGDRAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV

Homology

[Close]

BLAST of CmaCh10G003610.1 vs. Swiss-Prot
Match: TM230_CHICK (Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 28  PIKEIALAVSLLVFGMIGIVVGAFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALAV L + G   I++GA + +  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CmaCh10G003610.1 vs. Swiss-Prot
Match: TM230_PONAB (Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 28  PIKEIALAVSLLVFGMIGIVVGAFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   I++G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CmaCh10G003610.1 vs. Swiss-Prot
Match: TM230_HUMAN (Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 28  PIKEIALAVSLLVFGMIGIVVGAFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   I++G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CmaCh10G003610.1 vs. Swiss-Prot
Match: TM230_MOUSE (Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 28  PIKEIALAVSLLVFGMIGIVVGAFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   I++G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CmaCh10G003610.1 vs. Swiss-Prot
Match: TM230_RAT (Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 28  PIKEIALAVSLLVFGMIGIVVGAFMASNRV---GGDRAHGVFFSLLGALLFIPGFYYTRI 87
           P K IALA  L + G   I++G+ + S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 88  AYYAYKGYKGFSFSNIP 102
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CmaCh10G003610.1 vs. TrEMBL
Match: A0A0A0LUC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426960 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.7e-48
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MDSPF VNNRPPIKEIALAVSLLVFGMIGI+VGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           R HGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TrEMBL
Match: A0A068U364_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041466001 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-42
Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI+DEDI+MD+P+ VNNRPPIKEIALAV+LLVFG +GIV+G  MA N+VGGD
Sbjct: 1   MAYVDHAFSISDEDIMMDTPYTVNNRPPIKEIALAVALLVFGTLGIVLGVIMAVNKVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LG +LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TrEMBL
Match: A0A0K9QFP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189790 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-42
Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MD+ + +NN+PPIKEIALAVSLLVFG++GIV+G FMA N VGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDNTYAINNKPPIKEIALAVSLLVFGVVGIVLGIFMAVNHVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LGA+LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGMFFAILGAILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TrEMBL
Match: A0A0J8E2T6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155360 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-42
Identity = 83/103 (80.58%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MD+ + +NN+PPI+EIALAVSLLVFG+IGIV+G  MA+NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDNSYAINNKPPIREIALAVSLLVFGVIGIVLGILMAANRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LG +LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TrEMBL
Match: A0A059BYD8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03859 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-41
Identity = 85/103 (82.52%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI+DED++M++ + VNNRPPIKEIALAVSLLVFG IGIV+G  MAS +VGGD
Sbjct: 1   MAYVDHAFSISDEDMMMETTYTVNNRPPIKEIALAVSLLVFGSIGIVLGIIMASYKVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFF++LG++LFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFTMLGSILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TAIR10
Match: AT4G29850.1 (AT4G29850.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 173.7 bits (439), Expect = 5.8e-44
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI++++ + VNNRPP+KEIALAV+LLVFG +GIV G FMA NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           R HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TAIR10
Match: AT2G19350.1 (AT2G19350.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 166.8 bits (421), Expect = 7.1e-42
Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI+DED+++ + + V+NRPP+KEI+LAV LLVFG +GIV+G FMA NRVGGD
Sbjct: 1   MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           R HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIP V
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

[Close]

BLAST of CmaCh10G003610.1 vs. TAIR10
Match: AT3G29170.1 (AT3G29170.1 Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 25  NRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGDRAHGVFFSLLGALLFIPGFYYTRI 84
           +R P K IALAV LL  G + +++  F+    + GD + G    +LG L F+PGFY TRI
Sbjct: 43  DRVPWKSIALAVFLLFLGCLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRI 102

Query: 85  AYYAYKGYKGFSFSNIP 102
           AYY+++G +G+ F+ IP
Sbjct: 103 AYYSWRGAEGYRFAAIP 119

[Close]

BLAST of CmaCh10G003610.1 vs. NCBI nr
Match: gi|659107152|ref|XP_008453547.1| (PREDICTED: transmembrane protein 230-like [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 4.8e-48
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MDSPF VNNRPPIKEIALAVSLLVFGMIGI+VGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. NCBI nr
Match: gi|449457205|ref|XP_004146339.1| (PREDICTED: transmembrane protein 230-like [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MDSPF VNNRPPIKEIALAVSLLVFGMIGI+VGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           R HGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. NCBI nr
Match: gi|902151251|gb|KNA05498.1| (hypothetical protein SOVF_189790 [Spinacia oleracea])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MD+ + +NN+PPIKEIALAVSLLVFG++GIV+G FMA N VGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDNTYAINNKPPIKEIALAVSLLVFGVVGIVLGIFMAVNHVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LGA+LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGMFFAILGAILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. NCBI nr
Match: gi|661893196|emb|CDP03005.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 84/103 (81.55%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI+DEDI+MD+P+ VNNRPPIKEIALAV+LLVFG +GIV+G  MA N+VGGD
Sbjct: 1   MAYVDHAFSISDEDIMMDTPYTVNNRPPIKEIALAVALLVFGTLGIVLGVIMAVNKVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LG +LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CmaCh10G003610.1 vs. NCBI nr
Match: gi|731367784|ref|XP_010695798.1| (PREDICTED: transmembrane protein 230-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 178.3 bits (451), Expect = 6.7e-42
Identity = 83/103 (80.58%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60
           MAYVDHAFSI DEDI+MD+ + +NN+PPI+EIALAVSLLVFG+IGIV+G  MA+NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDNSYAINNKPPIREIALAVSLLVFGVIGIVLGILMAANRVGGD 60

Query: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 104
           RAHG+FF++LG +LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

The following BLAST results are available for this feature:

BLAST of CmaCh10G003610.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TM230_CHICK	1.0e-10	48.05	Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1	[more]
TM230_PONAB	1.0e-10	46.75	Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1	[more]
TM230_HUMAN	1.8e-10	46.75	Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1	[more]
TM230_MOUSE	1.8e-10	46.75	Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1	[more]
TM230_RAT	1.8e-10	46.75	Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=1 SV=1	[more]

BLAST of CmaCh10G003610.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUC1_CUCSA	9.7e-48	94.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G426960 PE=4 SV=1	[more]
A0A068U364_COFCA	1.6e-42	81.55	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041466001 PE=4 SV=1	[more]
A0A0K9QFP1_SPIOL	1.6e-42	81.55	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189790 PE=4 SV=1	[more]
A0A0J8E2T6_BETVU	4.7e-42	80.58	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155360 PE=4 S...	[more]
A0A059BYD8_EUCGR	1.0e-41	82.52	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03859 PE=4 SV=1	[more]

BLAST of CmaCh10G003610.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29850.1	5.8e-44	80.58	Eukaryotic protein of unknown function (DUF872)	[more]
AT2G19350.1	7.1e-42	76.70	Eukaryotic protein of unknown function (DUF872)	[more]
AT3G29170.1	1.7e-11	44.16	Eukaryotic protein of unknown function (DUF872)	[more]

BLAST of CmaCh10G003610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107152\|ref\|XP_008453547.1\|	4.8e-48	95.15	PREDICTED: transmembrane protein 230-like [Cucumis melo]	[more]
gi\|449457205\|ref\|XP_004146339.1\|	1.4e-47	94.17	PREDICTED: transmembrane protein 230-like [Cucumis sativus]	[more]
gi\|902151251\|gb\|KNA05498.1\|	2.3e-42	81.55	hypothetical protein SOVF_189790 [Spinacia oleracea]	[more]
gi\|661893196\|emb\|CDP03005.1\|	2.3e-42	81.55	unnamed protein product [Coffea canephora]	[more]
gi\|731367784\|ref\|XP_010695798.1\|	6.7e-42	80.58	PREDICTED: transmembrane protein 230-like [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008590	DUF872_TM

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G003610	CmaCh10G003610	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003610.1	CmaCh10G003610.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003610.1.CDS.2	CmaCh10G003610.1.CDS.2	CDS
CmaCh10G003610.1.CDS.1	CmaCh10G003610.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003610.1.five_prime_UTR.1	CmaCh10G003610.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003610.1.exon.2	CmaCh10G003610.1.exon.2	exon
CmaCh10G003610.1.exon.1	CmaCh10G003610.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Protein of unknown function DUF872, transmembrane	PFAM	PF05915	DUF872	coord: 29..101 score: 2.7
None	No IPR available	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 1..102 score: 8.1