CmaCh09G012350.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGGCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATTATTAGCAAAGGGGATATTCGTTTACTAGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSASMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKWILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWRSTLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIGIADNPADMLTKVIAREKFCHCLDLINVARKE
BLAST of CmaCh09G012350.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.7e-62 Identity = 117/216 (54.17%), Postives = 158/216 (73.15%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39 Identity = 95/225 (42.22%), Postives = 142/225 (63.11%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23 Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TrEMBL
Match: Q153Y3_PRUAV (Polyprotein (Fragment) OS=Prunus avium PE=4 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 1.2e-86 Identity = 158/218 (72.48%), Postives = 186/218 (85.32%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TrEMBL
Match: Q153Y5_SOLME (Polyprotein (Fragment) OS=Solanum melongena PE=4 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84 Identity = 149/219 (68.04%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TrEMBL
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_030746 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 3.3e-81 Identity = 148/218 (67.89%), Postives = 178/218 (81.65%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TrEMBL
Match: Q94FM1_CITPA (Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 6.6e-74 Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TrEMBL
Match: A5C541_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003855 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 3.4e-70 Identity = 127/218 (58.26%), Postives = 167/218 (76.61%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein) HSP 1 Score: 111.7 bits (278), Expect = 6.6e-25 Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8) HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22 Identity = 73/221 (33.03%), Postives = 109/221 (49.32%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. NCBI nr
Match: gi|108863081|gb|ABG22123.1| (polyprotein [Prunus avium]) HSP 1 Score: 327.8 bits (839), Expect = 1.7e-86 Identity = 158/218 (72.48%), Postives = 186/218 (85.32%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. NCBI nr
Match: gi|108863072|gb|ABG22121.1| (polyprotein [Solanum melongena]) HSP 1 Score: 320.9 bits (821), Expect = 2.0e-84 Identity = 149/219 (68.04%), Postives = 184/219 (84.02%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. NCBI nr
Match: gi|657958769|ref|XP_008370919.1| (PREDICTED: uncharacterized protein LOC103434364 [Malus domestica]) HSP 1 Score: 314.7 bits (805), Expect = 1.5e-82 Identity = 165/259 (63.71%), Postives = 192/259 (74.13%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. NCBI nr
Match: gi|1012336336|gb|KYP47640.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]) HSP 1 Score: 309.7 bits (792), Expect = 4.7e-81 Identity = 148/218 (67.89%), Postives = 178/218 (81.65%), Query Frame = 1
BLAST of CmaCh09G012350.1 vs. NCBI nr
Match: gi|14586968|gb|AAK70406.1|AF369930_1 (pol polyprotein [Citrus x paradisi]) HSP 1 Score: 285.4 bits (729), Expect = 9.5e-74 Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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