CmaCh09G012350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G012350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-BL Gag-Pol polyprotein
Location	Cma_Chr09 : 8234423 .. 8236011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGGCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATTATTAGCAAAGGGGATATTCGTTTACTAGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

mRNA sequence

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

Coding sequence (CDS)

ATGAAAGACTTAGGCAATGCAAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTATAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATGATTCAACCAAACCCGTTAGCACTCCACTTGCTCCTCATTTCAAGCTGAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGGTATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACTTGATCTTTCACACGCAGTAAGCATAGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGATTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCTACTACGGGATATTTATTTACTATGGCTGGTGGACCTATTTGTTGGCGTTCAACATTGCAGTCTACGGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCAGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGAAATTGGAATTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGCAAGGAAGGAGTAG

Protein sequence

MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSASMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKWILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWRSTLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIGIADNPADMLTKVIAREKFCHCLDLINVARKE

Homology

[Close]

BLAST of CmaCh09G012350 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-62
Identity = 117/216 (54.17%), Postives = 158/216 (73.15%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            MKDLG A++ILGM+I R+R    +WL+Q +Y+ +VL RF++ ++ KPVSTPLA H KLS 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNA-KPVSTPLAGHLKLSK 1094

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
             MCP++ ++K  M  +PY++AVG+LMYAMVCTR D++HAV +VSR++ NPGKEHW+AVKW
Sbjct: 1095 KMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1154

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
            ILRY+ GT    + F        D  +  + D+D AGD+D R+S+TGYLFT +GG I W+
Sbjct: 1155 ILRYLRGTTGDCLCFG-----GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQ 1214

Query: 181  STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDL 217
            S LQ  VALSTTEAEY+A TE  KE IW+   + +L
Sbjct: 1215 SKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244

[Close]

BLAST of CmaCh09G012350 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39
Identity = 95/225 (42.22%), Postives = 142/225 (63.11%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            M DL   K  +G+ IE    K  ++L+QS Y++K+LS+F++ ++   VSTPL    K++ 
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDK--IYLSQSAYVKKILSKFNM-ENCNAVSTPLPS--KINY 1173

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
             +  S +D      N P  + +G LMY M+CTR DL+ AV+I+SRY      E WQ +K 
Sbjct: 1174 ELLNSDEDC-----NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1233

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAG-GPICW 180
            +LRY+ GTID+ + F+K   F  +N++  +VDSD+AG    R+STTGYLF M     ICW
Sbjct: 1234 VLRYLKGTIDMKLIFKKNLAF--ENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1293

Query: 181  RSTLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIGIADNP 225
             +  Q++VA S+TEAEYMA+ EA +EA+W+  L+  + I + +NP
Sbjct: 1294 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL-ENP 1325

[Close]

BLAST of CmaCh09G012350 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG     LG++I +    G+ +L+Q++Y  ++L+   + D  KP+STPL    KL++
Sbjct: 33  MKDLGPVHYFLGIQI-KTHPSGL-FLSQTKYAEQILNNAGMLDC-KPMSTPLP--LKLNS 92

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S+  +     +Y +   + + VGAL Y +  TR D+S+AV+IV + MH P    +  +K 
Sbjct: 93  SVSTA-----KYPDPSDFRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKR 152

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           +LRY+ GTI  G+   K    N    V  F DSD+AG    RRSTTG+   +    I W 
Sbjct: 153 VLRYVKGTIFHGLYIHKNSKLN----VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWS 212

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIW 209
           +  Q TV+ S+TE EY A+     E  W
Sbjct: 213 AKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh09G012350 vs. TrEMBL
Match: Q153Y3_PRUAV (Polyprotein (Fragment) OS=Prunus avium PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-86
Identity = 158/218 (72.48%), Postives = 186/218 (85.32%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG A+KILGMEIERDR KG + L Q QYL+KVL RF +N+++KPVSTPLAPHFKLSA
Sbjct: 28  MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSA 87

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           SM P++D++  YM  IPY +AVG+LMYAMVCTR D+S AVSIVSRYMHNPGK HWQAVKW
Sbjct: 88  SMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKW 147

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYILGT+DVG+ FQ+ ++      V  +VDSDYAGDLDKRRSTTG++FT+AGGP+ WR
Sbjct: 148 ILRYILGTVDVGLLFQQDKVSG--QCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWR 207

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
           S LQSTVALSTTEAEYMAVTEA KEAIW+ GL++DL +
Sbjct: 208 SILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGV 243

[Close]

BLAST of CmaCh09G012350 vs. TrEMBL
Match: Q153Y5_SOLME (Polyprotein (Fragment) OS=Solanum melongena PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 149/219 (68.04%), Postives = 184/219 (84.02%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG AKKILGMEI RDR++G + LTQ QYL+KVL RF +ND +KPVSTPLAPH KLS+
Sbjct: 113 MKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSS 172

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            + P +D+++ YM  +PY NAVG+LMYAMVCTR D+S AVS+VSRYMH+PGK HWQAVKW
Sbjct: 173 QLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKW 232

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYI  T+D+G+ F++ +  +L + V  + DSDYAGDLDKRRSTTGYLFT+A GP+ W+
Sbjct: 233 ILRYIKNTVDIGLVFEQDK--SLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWK 292

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIG 220
           STLQ+TVALSTTEAEYMA+TEA KEAIW+HGL+ +L +G
Sbjct: 293 STLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVG 329

[Close]

BLAST of CmaCh09G012350 vs. TrEMBL
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_030746 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.3e-81
Identity = 148/218 (67.89%), Postives = 178/218 (81.65%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            MKDLG AKKILGMEI RDRK G + LTQ +YL++VL RF ++D +KPVSTPLA HFKLSA
Sbjct: 804  MKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSA 863

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            ++ P    +K YM  +PY +AVG+LMYAMVCTR D+S+AV +VSRYMHNPGKEHWQAVKW
Sbjct: 864  NLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKW 923

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
            ILRYIL T+DVG+ FQ+++       V  + DS+YAGDLD RRSTTGY+FT+A  P+CWR
Sbjct: 924  ILRYILNTVDVGLVFQQEQD---GQNVVGYCDSNYAGDLDNRRSTTGYVFTLAKAPVCWR 983

Query: 181  STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
            STLQSTVALSTTEAEYMA+TEA KEAIW+ GL+ +L I
Sbjct: 984  STLQSTVALSTTEAEYMALTEAVKEAIWLQGLLGELGI 1018

[Close]

BLAST of CmaCh09G012350 vs. TrEMBL
Match: Q94FM1_CITPA (Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.6e-74
Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK LG+A++ILGM+I RD+K   VWLTQ  YL+KVL RF ++D TK V TPLA HFKLS+
Sbjct: 1   MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP S +++ YM  +PY + VG+L+YAMVCTR D+S AVS+VSRYMHNPGK  W AVKW
Sbjct: 61  SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRY+ GT+DVG+ F+K    N   +   + DSD+AGDLDK+RST+GY+FT+ GG + WR
Sbjct: 121 ILRYLYGTVDVGLLFKK----NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWR 180

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
           S LQST+ALSTTEAEY+A TEA KEAIW+ GL+ DL +
Sbjct: 181 SILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGV 214

[Close]

BLAST of CmaCh09G012350 vs. TrEMBL
Match: A5C541_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003855 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.4e-70
Identity = 127/218 (58.26%), Postives = 167/218 (76.61%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG  KKI+G+EI RDR  G +WL+Q  Y++++L RF++ D+ KPVSTPLA HF+LS 
Sbjct: 116 MKDLGVTKKIIGIEIHRDRALGRLWLSQHNYVKRMLERFNM-DNAKPVSTPLANHFRLST 175

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP +D +   M  +PY +AVG LMYAMVCTRLDL+HAVS+VS+++ NPG+ +W AVKW
Sbjct: 176 SQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKW 235

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           I RY+ GT D GI F KQ+    D  V  +VD+DYAGDLD+RRST GY+FT+ GGPICW+
Sbjct: 236 IFRYLRGTTDYGITFSKQQS---DPSVKGYVDADYAGDLDERRSTIGYVFTLGGGPICWK 295

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
           S +QS VAL TT++EYMA+ E  KE++W+ GL+ +L I
Sbjct: 296 SMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGI 329

[Close]

BLAST of CmaCh09G012350 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.6e-25
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG     LG++I +    G+ +L+Q++Y  ++L+   + D  KP+STPL    KL++
Sbjct: 33  MKDLGPVHYFLGIQI-KTHPSGL-FLSQTKYAEQILNNAGMLDC-KPMSTPLP--LKLNS 92

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S+  +     +Y +   + + VGAL Y +  TR D+S+AV+IV + MH P    +  +K 
Sbjct: 93  SVSTA-----KYPDPSDFRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKR 152

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           +LRY+ GTI  G+   K    N    V  F DSD+AG    RRSTTG+   +    I W 
Sbjct: 153 VLRYVKGTIFHGLYIHKNSKLN----VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWS 212

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIW 209
           +  Q TV+ S+TE EY A+     E  W
Sbjct: 213 AKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh09G012350 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22
Identity = 73/221 (33.03%), Postives = 109/221 (49.32%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           ++DLG  K  LG+EI R      + + Q +Y   +L    L    KP S P+ P    SA
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLL-GCKPSSVPMDPSVTFSA 369

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
               S  D   +++   Y   +G LMY  + TRLD+S AV+ +S++   P   H QAV  
Sbjct: 370 H---SGGD---FVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMK 429

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           IL YI GT+  G+ +  Q    L      F D+ +    D RRST GY   +    I W+
Sbjct: 430 ILHYIKGTVGQGLFYSSQAEMQLQV----FSDASFQSCKDTRRSTNGYCMFLGTSLISWK 489

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIGIA 222
           S  Q  V+ S+ EAEY A++ A  E +W+     +L++ ++
Sbjct: 490 SKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 516

[Close]

BLAST of CmaCh09G012350 vs. NCBI nr
Match: gi|108863081|gb|ABG22123.1| (polyprotein [Prunus avium])

HSP 1 Score: 327.8 bits (839), Expect = 1.7e-86
Identity = 158/218 (72.48%), Postives = 186/218 (85.32%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG A+KILGMEIERDR KG + L Q QYL+KVL RF +N+++KPVSTPLAPHFKLSA
Sbjct: 28  MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSA 87

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           SM P++D++  YM  IPY +AVG+LMYAMVCTR D+S AVSIVSRYMHNPGK HWQAVKW
Sbjct: 88  SMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKW 147

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYILGT+DVG+ FQ+ ++      V  +VDSDYAGDLDKRRSTTG++FT+AGGP+ WR
Sbjct: 148 ILRYILGTVDVGLLFQQDKVSG--QCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWR 207

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
           S LQSTVALSTTEAEYMAVTEA KEAIW+ GL++DL +
Sbjct: 208 SILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGV 243

[Close]

BLAST of CmaCh09G012350 vs. NCBI nr
Match: gi|108863072|gb|ABG22121.1| (polyprotein [Solanum melongena])

HSP 1 Score: 320.9 bits (821), Expect = 2.0e-84
Identity = 149/219 (68.04%), Postives = 184/219 (84.02%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG AKKILGMEI RDR++G + LTQ QYL+KVL RF +ND +KPVSTPLAPH KLS+
Sbjct: 113 MKDLGEAKKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSS 172

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            + P +D+++ YM  +PY NAVG+LMYAMVCTR D+S AVS+VSRYMH+PGK HWQAVKW
Sbjct: 173 QLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKW 232

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYI  T+D+G+ F++ +  +L + V  + DSDYAGDLDKRRSTTGYLFT+A GP+ W+
Sbjct: 233 ILRYIKNTVDIGLVFEQDK--SLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWK 292

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEIG 220
           STLQ+TVALSTTEAEYMA+TEA KEAIW+HGL+ +L +G
Sbjct: 293 STLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVG 329

[Close]

BLAST of CmaCh09G012350 vs. NCBI nr
Match: gi|657958769|ref|XP_008370919.1| (PREDICTED: uncharacterized protein LOC103434364 [Malus domestica])

HSP 1 Score: 314.7 bits (805), Expect = 1.5e-82
Identity = 165/259 (63.71%), Postives = 192/259 (74.13%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MKDLG A+KILGMEIERDR KG + L Q QYL+KVL RF +N+++K VSTPLA HFKLSA
Sbjct: 176 MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFRMNENSKLVSTPLASHFKLSA 235

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           SM P + ++ +YM  IPY N VG+LMYAMVCTR D+S AVSIVSRYMHNPGK HWQAVKW
Sbjct: 236 SMSPKTVEESQYMAQIPYANVVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKW 295

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRYILGT+DVG+ FQ+ +       V  +VD DYAGDLDKRRSTTG++FT+AGGP+ WR
Sbjct: 296 ILRYILGTVDVGLLFQRDKF--TGQCVVGYVDFDYAGDLDKRRSTTGFVFTIAGGPVSWR 355

Query: 181 STLQSTVALSTTEAEYMA------------VTEAFKEAIWMHGLINDLEIGIADNPADML 240
           S LQSTVALSTTEAEYMA            V   F   I   G I   +IG ADN ADML
Sbjct: 356 SILQSTVALSTTEAEYMANQVYHARTKHIDVRFHFVREIIDEGDILLQKIGTADNLADML 415

Query: 241 TKVIAREKFCHCLDLINVA 248
           TK ++  KF HCLDL++ A
Sbjct: 416 TKPVSLLKFKHCLDLLDAA 432

[Close]

BLAST of CmaCh09G012350 vs. NCBI nr
Match: gi|1012336336|gb|KYP47640.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 309.7 bits (792), Expect = 4.7e-81
Identity = 148/218 (67.89%), Postives = 178/218 (81.65%), Query Frame = 1


Query: 1    MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
            MKDLG AKKILGMEI RDRK G + LTQ +YL++VL RF ++D +KPVSTPLA HFKLSA
Sbjct: 804  MKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSA 863

Query: 61   SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
            ++ P    +K YM  +PY +AVG+LMYAMVCTR D+S+AV +VSRYMHNPGKEHWQAVKW
Sbjct: 864  NLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKW 923

Query: 121  ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
            ILRYIL T+DVG+ FQ+++       V  + DS+YAGDLD RRSTTGY+FT+A  P+CWR
Sbjct: 924  ILRYILNTVDVGLVFQQEQD---GQNVVGYCDSNYAGDLDNRRSTTGYVFTLAKAPVCWR 983

Query: 181  STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
            STLQSTVALSTTEAEYMA+TEA KEAIW+ GL+ +L I
Sbjct: 984  STLQSTVALSTTEAEYMALTEAVKEAIWLQGLLGELGI 1018

[Close]

BLAST of CmaCh09G012350 vs. NCBI nr
Match: gi|14586968|gb|AAK70406.1|AF369930_1 (pol polyprotein [Citrus x paradisi])

HSP 1 Score: 285.4 bits (729), Expect = 9.5e-74
Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1


Query: 1   MKDLGNAKKILGMEIERDRKKGIVWLTQSQYLRKVLSRFSLNDSTKPVSTPLAPHFKLSA 60
           MK LG+A++ILGM+I RD+K   VWLTQ  YL+KVL RF ++D TK V TPLA HFKLS+
Sbjct: 1   MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 61  SMCPSSDDDKRYMENIPYTNAVGALMYAMVCTRLDLSHAVSIVSRYMHNPGKEHWQAVKW 120
           S CP S +++ YM  +PY + VG+L+YAMVCTR D+S AVS+VSRYMHNPGK  W AVKW
Sbjct: 61  SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 121 ILRYILGTIDVGIKFQKQEMFNLDNRVADFVDSDYAGDLDKRRSTTGYLFTMAGGPICWR 180
           ILRY+ GT+DVG+ F+K    N   +   + DSD+AGDLDK+RST+GY+FT+ GG + WR
Sbjct: 121 ILRYLYGTVDVGLLFKK----NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWR 180

Query: 181 STLQSTVALSTTEAEYMAVTEAFKEAIWMHGLINDLEI 219
           S LQST+ALSTTEAEY+A TEA KEAIW+ GL+ DL +
Sbjct: 181 SILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGV 214

The following BLAST results are available for this feature:

BLAST of CmaCh09G012350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.7e-62	54.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.5e-39	42.22	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	1.2e-23	36.54	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmaCh09G012350 vs. TrEMBL


Match Name	E-value	Identity	Description
Q153Y3_PRUAV	1.2e-86	72.48	Polyprotein (Fragment) OS=Prunus avium PE=4 SV=1	[more]
Q153Y5_SOLME	1.4e-84	68.04	Polyprotein (Fragment) OS=Solanum melongena PE=4 SV=1	[more]
A0A151RYL1_CAJCA	3.3e-81	67.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
Q94FM1_CITPA	6.6e-74	61.93	Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1	[more]
A5C541_VITVI	3.4e-70	58.26	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003855 PE=4 SV=1	[more]

BLAST of CmaCh09G012350 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00810.1	6.6e-25	36.54	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.4e-22	33.03	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of CmaCh09G012350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|108863081\|gb\|ABG22123.1\|	1.7e-86	72.48	polyprotein [Prunus avium]	[more]
gi\|108863072\|gb\|ABG22121.1\|	2.0e-84	68.04	polyprotein [Solanum melongena]	[more]
gi\|657958769\|ref\|XP_008370919.1\|	1.5e-82	63.71	PREDICTED: uncharacterized protein LOC103434364 [Malus domestica]	[more]
gi\|1012336336\|gb\|KYP47640.1\|	4.7e-81	67.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|14586968\|gb\|AAK70406.1\|AF369930_1	9.5e-74	61.93	pol polyprotein [Citrus x paradisi]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012350.1	CmaCh09G012350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..53 score: 3.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..225 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G012350	Cucumber (Chinese Long) v3	cmacucB0037
CmaCh09G012350	Watermelon (97103) v2	cmawmbB036
CmaCh09G012350	Wax gourd	cmawgoB0012
CmaCh09G012350	Cucurbita maxima (Rimu)	cmacmaB046
CmaCh09G012350	Cucumber (Gy14) v1	cgycmaB0087
CmaCh09G012350	Cucurbita moschata (Rifu)	cmacmoB029
CmaCh09G012350	Cucurbita moschata (Rifu)	cmacmoB043
CmaCh09G012350	Wild cucumber (PI 183967)	cmacpiB030
CmaCh09G012350	Cucumber (Chinese Long) v2	cmacuB030
CmaCh09G012350	Melon (DHL92) v3.5.1	cmameB010
CmaCh09G012350	Watermelon (Charleston Gray)	cmawcgB030
CmaCh09G012350	Watermelon (97103) v1	cmawmB015
CmaCh09G012350	Cucurbita pepo (Zucchini)	cmacpeB056
CmaCh09G012350	Cucurbita pepo (Zucchini)	cmacpeB062
CmaCh09G012350	Bottle gourd (USVL1VR-Ls)	cmalsiB033
CmaCh09G012350	Cucumber (Gy14) v2	cgybcmaB579
CmaCh09G012350	Melon (DHL92) v3.6.1	cmamedB011
CmaCh09G012350	Silver-seed gourd	carcmaB0061