CmaCh09G006960.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGTCAGTATCTCAACTTACTATTGAAGCCCTTTGTTTCTTGTCTGTTCTATACTTGATTCACTTATATTAGCTTGAAGGGGGACTCTGTTTTATGATTATTGCTCCTAATGGGACGATCTAAGAGTGTAGAAGAAGCACATTCTTGGAGGATGTATAGAGTAAGGTGATCGTTTTAGTGATATCATTACGTACATAGTACACAGAAGATTAGGTGTAACAGCCCAAACCCACCGCTAGTACATATGGTCCTCTTTAGGCTTTTCCATTCAGGCTTTCCCGCAAGGTTTTTAAAACGCGTTTACTAAAGGGAGGTTGTTCTCCTTCACAACCGGTGTGAGATCTCACAATCCACCCCTTATTGAGATCCAATGTGATATCCCGCATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGTATGGAAACCTTTCCTTAACAGACGGGAAGCCCAAAAGGAAAATTCTAAAGAGGACAATATCTACTAGCGGTGGGCTTGTGCACATCCAGTGTTATCGTTGGCACACATTCTCCTCTCCAATCGACTCATTCCCCAATTGCTTGAAACGTGGTGGGCATCCCATATGTCAAAGATAAATCCTACATCTACATGCAGGGTCTTACAGCAAGAACAATCTGAGCCAGTTAGCTCATTTTACTTTGTAATGTTCTTTGGTCGGGCTTAAAATTATAAGATCTTGTTTGAATCTTCCATGCTGCTAGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGGTAGCCATCGATCATCTACTTCTATTATGCATGTAGACTTTAATAGCGAATTATTTAGGTGCTCTTCTACATTTTGCTGTCGTTTTCTTCTGCCAGTTAGCAGGAAGTTCAAGTCACTTTCACAGTTTAATCATCTTTTCATTCAGAATTTAGAATTTGAAATGATGATTAACTTGTTTGGTAAAATTCTTGCCTTTGCATCACTCTACCTTCATTTCTTTAAACATGTCTCTAAAAGACATTGATAAGTTGCCTATGGATTATGATAGCTGAGAGTAAATTGTTCATGTGGAGAAATGCTATGAATTCTCGATTGGAGAGGAGAATGAAACATTCTTTATAAGGGTATAGAAACATCTCCCTAACAGATCCATCTTAAAACCGTGAGGCCGATGACAATACGTATGAGCCAAAATAGACAATATCTGCTAGCGGAGGGTTTGGGCTGTTACAAATGATATCAAAGGCAGACACTGAGTGGTGTGTCAATGAGGACACTGAATCCCCAAGGGGGTGATCTCACATCAGTTAGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGAAAACCTCTCCCTAACAGACGTGTTTTAGAACTATAAAGTTGATGGCGATATGTTCTTCACTTTCACTCACTTAGGAGTCCAACTCAAATCTTCCTAACATGAGAGAGATCCTCGAGAAAATGCATAAATCCTCGAGAATCATGCCACCAACCAAATCTTTCACCTGACCAAAGTAGAAAAATACTCAAATTCTCATTGAACAATGTGCATTCTACATTATTGCCATCATTTTACGTTTTACATTTGAAGTTAAAACATGATACATTTCTATTCATGGAGGTTTCTTTGGAATGTCTTCTCATAATTTGACTCTTTCAATTATTTGATGAAGATTGCAGTGTTTAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGGTCAGTGTGGTCCTCTTGATTGTTTATTCAGCAACCAAAAAGGCTACAAAAAGTGCACATCTTTCGTAGATTCAAAGATGTAGACCAAACCTTGTGAGATAGAGATCAGAAGCACAAACACTGAGGGAGAATGAGGAATAAGATTGTGCTTAAAGAAACAACTTTTAGGATTGGTGTCAGTGAGTGAGTGGGTGGGTAAGGCCAAGGCCTTTTTATGTGCATCAAAAGCTAAGTGGGATGGTCATTTGTTGAAGCTCTCATGGGTCTGCATTTCCTGCCTTATCTGTTTCTCACTTTCATTATTTTGTGCGTTTCAAGTATTACCTGGATTTCTGTGTTGCAGTGTCTTCTCTCTTTACATTCCTTGTGTCCCTACCATGCAATGCTATTATCCCTTTCCTTGTCGGGTGTGGTTAGTGTAACAGCTCAAGCCTACCGTTAGTAAATATTGTACTCTTTGGGCTTTTCCTTCTGGGCTTCTCTTTGAACTTTTTAAAACGTGTCGGTTAGGGAGAGTGTTTCCAAGCCCACCGCTAACAGATAATGTCTTTTTTGGATTTTTCCTTTCGAGCTTTCCCTCAAGGTTTTTAAAACGCATCTACTAAGGAGAGATTTCCAAGCCCATCGCTAGCCGATATTGTCCTATTTAGGCTTTTCCTTCTGGACTTCTCCTTAAGGTTTTTAAAACTTGTCTGCTAGGGAGAGGTTTTCAAGCCCACCGCTAACCGATATTGTCCTACTTAGGCTTTTCCTTATGGACTTCTCCTTAAGGTTTTTAAGACGTGTCTGCTAGGGAGAGGCTTTCAAGCCCACTGTTAGCAGATATTGTCTTATTTGGACTTTTCCTTCCGAACTTCCCTTAAAGGTTTTAAAATGTGTATGTTAGGGAGAGGTTTCCAAATCCACCGCTAGCAGATATTGTCCTATTTGGGCTTTCCCTTCTAGACTTCTCCATAAAGTTTTTAAAGCGCGTCTGCTAAGGAGAGATTTCCACACCTTTATAAAAAATGTTTCGTTCCCTTCTCCAACTGATGTGGGATCTCACAAAACTCAAATACGAGTGCAGCTAGCTAGATGGATGATGAGGAAGGCTGGCTTTGTTATTTAAATCCTTGTCTAATGCCAATACACAGTTTGTTTTGTTTGTTTGTGATTCTTTAACTCCTTATATGCCTTTATGTAGTTTGTTTCCTTCGATGTCTCTCTTTCCTCAATAATGGTCCTTGGATCCTTTTGATGTTCTACATTGCCCTTCCATGACATTATTGAATGCTACACAATTATTTAGTTTGCTTATTATTATCAGAACATGGGAACATCAGGTGCAGACACCAAATCTTGGCCATCCATTGCACATAAAAGAGAGAGAGTCTCACAAAGCATAGCCTAAAAATGAAACTTATACTAACAATGCCCTGTTTGTCTGTGTAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTGCGTGACAAACTTCCCCTCTTTTATTGCACTTTTGTCTCTTTCTTTCTCACACTTCTCTTCTCATCTCCATTTATTCATTCCCTCTCTCTCTTTTACTTTTCCATTTTTCCAAAATAGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGACTTTATTGGTAGAACTCCAACGAAAAAAGAACAAACATTCATCAAGGTCATTCAAAAACGAAATGAAGAGAGGGAGATGACAATTGTATGATTTGTGATGCTCACTAAGTCTTCAGACTTTTGATGTTGTATTTGATAAATTTTGTATTCGCTAATTCCAATACAGTTCAATGGATAAGTCTCAAAAGTTGATAATTTAAGGTTCATCGAGG ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGACTTTATTGGTAGAACTCCAACGAAAAAAGAACAAACATTCATCAAGGTCATTCAAAAACGAAATGAAGAGAGGGAGATGACAATTGTATGATTTGTGATGCTCACTAAGTCTTCAGACTTTTGATGTTGTATTTGATAAATTTTGTATTCGCTAATTCCAATACAGTTCAATGGATAAGTCTCAAAAGTTGATAATTTAAGGTTCATCGAGG ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGA MAVRLTSAWGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSLHLASGHWDVGLACGGSSSTQLLQFCRLPQHVVPWLEAHQGGIMGVSFRGRQSVGGRERERGNGTKERTGIGGGDGSVGWVISSTKVGSNI
BLAST of CmaCh09G006960.1 vs. TrEMBL
Match: A0A0A0L358_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620650 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. TrEMBL
Match: A0A059A0E1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01353 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12 Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. TrEMBL
Match: A0A067KMI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08297 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11 Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. TrEMBL
Match: B9R8I6_RICCO (Guanine nucleotide exchange factor P532, putative OS=Ricinus communis GN=RCOM_1600140 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10 Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. TrEMBL
Match: K4CEF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10 Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. TAIR10
Match: AT5G60870.1 (AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10 Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. NCBI nr
Match: gi|659129314|ref|XP_008464624.1| (PREDICTED: ultraviolet-B receptor UVR8 [Cucumis melo]) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13 Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. NCBI nr
Match: gi|449456530|ref|XP_004146002.1| (PREDICTED: E3 ubiquitin-protein ligase HERC2 [Cucumis sativus]) HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. NCBI nr
Match: gi|629081162|gb|KCW47607.1| (hypothetical protein EUGRSUZ_K01353 [Eucalyptus grandis]) HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11 Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. NCBI nr
Match: gi|643729679|gb|KDP37456.1| (hypothetical protein JCGZ_08297 [Jatropha curcas]) HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11 Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1
BLAST of CmaCh09G006960.1 vs. NCBI nr
Match: gi|698495686|ref|XP_009793940.1| (PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Nicotiana sylvestris]) HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11 Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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