CmaCh09G006960 (gene) Cucurbita maxima (Rimu)

NameCmaCh09G006960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRegulator of chromosome condensation family protein
LocationCma_Chr09 : 3280914 .. 3284742 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGTCAGTATCTCAACTTACTATTGAAGCCCTTTGTTTCTTGTCTGTTCTATACTTGATTCACTTATATTAGCTTGAAGGGGGACTCTGTTTTATGATTATTGCTCCTAATGGGACGATCTAAGAGTGTAGAAGAAGCACATTCTTGGAGGATGTATAGAGTAAGGTGATCGTTTTAGTGATATCATTACGTACATAGTACACAGAAGATTAGGTGTAACAGCCCAAACCCACCGCTAGTACATATGGTCCTCTTTAGGCTTTTCCATTCAGGCTTTCCCGCAAGGTTTTTAAAACGCGTTTACTAAAGGGAGGTTGTTCTCCTTCACAACCGGTGTGAGATCTCACAATCCACCCCTTATTGAGATCCAATGTGATATCCCGCATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGTATGGAAACCTTTCCTTAACAGACGGGAAGCCCAAAAGGAAAATTCTAAAGAGGACAATATCTACTAGCGGTGGGCTTGTGCACATCCAGTGTTATCGTTGGCACACATTCTCCTCTCCAATCGACTCATTCCCCAATTGCTTGAAACGTGGTGGGCATCCCATATGTCAAAGATAAATCCTACATCTACATGCAGGGTCTTACAGCAAGAACAATCTGAGCCAGTTAGCTCATTTTACTTTGTAATGTTCTTTGGTCGGGCTTAAAATTATAAGATCTTGTTTGAATCTTCCATGCTGCTAGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGGTAGCCATCGATCATCTACTTCTATTATGCATGTAGACTTTAATAGCGAATTATTTAGGTGCTCTTCTACATTTTGCTGTCGTTTTCTTCTGCCAGTTAGCAGGAAGTTCAAGTCACTTTCACAGTTTAATCATCTTTTCATTCAGAATTTAGAATTTGAAATGATGATTAACTTGTTTGGTAAAATTCTTGCCTTTGCATCACTCTACCTTCATTTCTTTAAACATGTCTCTAAAAGACATTGATAAGTTGCCTATGGATTATGATAGCTGAGAGTAAATTGTTCATGTGGAGAAATGCTATGAATTCTCGATTGGAGAGGAGAATGAAACATTCTTTATAAGGGTATAGAAACATCTCCCTAACAGATCCATCTTAAAACCGTGAGGCCGATGACAATACGTATGAGCCAAAATAGACAATATCTGCTAGCGGAGGGTTTGGGCTGTTACAAATGATATCAAAGGCAGACACTGAGTGGTGTGTCAATGAGGACACTGAATCCCCAAGGGGGTGATCTCACATCAGTTAGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGAAAACCTCTCCCTAACAGACGTGTTTTAGAACTATAAAGTTGATGGCGATATGTTCTTCACTTTCACTCACTTAGGAGTCCAACTCAAATCTTCCTAACATGAGAGAGATCCTCGAGAAAATGCATAAATCCTCGAGAATCATGCCACCAACCAAATCTTTCACCTGACCAAAGTAGAAAAATACTCAAATTCTCATTGAACAATGTGCATTCTACATTATTGCCATCATTTTACGTTTTACATTTGAAGTTAAAACATGATACATTTCTATTCATGGAGGTTTCTTTGGAATGTCTTCTCATAATTTGACTCTTTCAATTATTTGATGAAGATTGCAGTGTTTAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGGTCAGTGTGGTCCTCTTGATTGTTTATTCAGCAACCAAAAAGGCTACAAAAAGTGCACATCTTTCGTAGATTCAAAGATGTAGACCAAACCTTGTGAGATAGAGATCAGAAGCACAAACACTGAGGGAGAATGAGGAATAAGATTGTGCTTAAAGAAACAACTTTTAGGATTGGTGTCAGTGAGTGAGTGGGTGGGTAAGGCCAAGGCCTTTTTATGTGCATCAAAAGCTAAGTGGGATGGTCATTTGTTGAAGCTCTCATGGGTCTGCATTTCCTGCCTTATCTGTTTCTCACTTTCATTATTTTGTGCGTTTCAAGTATTACCTGGATTTCTGTGTTGCAGTGTCTTCTCTCTTTACATTCCTTGTGTCCCTACCATGCAATGCTATTATCCCTTTCCTTGTCGGGTGTGGTTAGTGTAACAGCTCAAGCCTACCGTTAGTAAATATTGTACTCTTTGGGCTTTTCCTTCTGGGCTTCTCTTTGAACTTTTTAAAACGTGTCGGTTAGGGAGAGTGTTTCCAAGCCCACCGCTAACAGATAATGTCTTTTTTGGATTTTTCCTTTCGAGCTTTCCCTCAAGGTTTTTAAAACGCATCTACTAAGGAGAGATTTCCAAGCCCATCGCTAGCCGATATTGTCCTATTTAGGCTTTTCCTTCTGGACTTCTCCTTAAGGTTTTTAAAACTTGTCTGCTAGGGAGAGGTTTTCAAGCCCACCGCTAACCGATATTGTCCTACTTAGGCTTTTCCTTATGGACTTCTCCTTAAGGTTTTTAAGACGTGTCTGCTAGGGAGAGGCTTTCAAGCCCACTGTTAGCAGATATTGTCTTATTTGGACTTTTCCTTCCGAACTTCCCTTAAAGGTTTTAAAATGTGTATGTTAGGGAGAGGTTTCCAAATCCACCGCTAGCAGATATTGTCCTATTTGGGCTTTCCCTTCTAGACTTCTCCATAAAGTTTTTAAAGCGCGTCTGCTAAGGAGAGATTTCCACACCTTTATAAAAAATGTTTCGTTCCCTTCTCCAACTGATGTGGGATCTCACAAAACTCAAATACGAGTGCAGCTAGCTAGATGGATGATGAGGAAGGCTGGCTTTGTTATTTAAATCCTTGTCTAATGCCAATACACAGTTTGTTTTGTTTGTTTGTGATTCTTTAACTCCTTATATGCCTTTATGTAGTTTGTTTCCTTCGATGTCTCTCTTTCCTCAATAATGGTCCTTGGATCCTTTTGATGTTCTACATTGCCCTTCCATGACATTATTGAATGCTACACAATTATTTAGTTTGCTTATTATTATCAGAACATGGGAACATCAGGTGCAGACACCAAATCTTGGCCATCCATTGCACATAAAAGAGAGAGAGTCTCACAAAGCATAGCCTAAAAATGAAACTTATACTAACAATGCCCTGTTTGTCTGTGTAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTGCGTGACAAACTTCCCCTCTTTTATTGCACTTTTGTCTCTTTCTTTCTCACACTTCTCTTCTCATCTCCATTTATTCATTCCCTCTCTCTCTTTTACTTTTCCATTTTTCCAAAATAGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGACTTTATTGGTAGAACTCCAACGAAAAAAGAACAAACATTCATCAAGGTCATTCAAAAACGAAATGAAGAGAGGGAGATGACAATTGTATGATTTGTGATGCTCACTAAGTCTTCAGACTTTTGATGTTGTATTTGATAAATTTTGTATTCGCTAATTCCAATACAGTTCAATGGATAAGTCTCAAAAGTTGATAATTTAAGGTTCATCGAGG

mRNA sequence

ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGACTTTATTGGTAGAACTCCAACGAAAAAAGAACAAACATTCATCAAGGTCATTCAAAAACGAAATGAAGAGAGGGAGATGACAATTGTATGATTTGTGATGCTCACTAAGTCTTCAGACTTTTGATGTTGTATTTGATAAATTTTGTATTCGCTAATTCCAATACAGTTCAATGGATAAGTCTCAAAAGTTGATAATTTAAGGTTCATCGAGG

Coding sequence (CDS)

ATGGCGGTTCGTTTGACGTCGGCTTGGGGTAAAGGCGACGGCGGCCGTCTCTGTTTGGGCTACGAGAACCCTGTCTTTATACCCACTTTGAATCCTCGCTTAGAGGGTGTTCGTTGCATTGCTCTTGGGGGTCTGCTTTCCGCTGCGCTCAACTCGCTTCACCTGGCTTCGGGCCATTGGGATGTAGGTTTGGCCTGTGGTGGTTCCTCTTCAACGCAGCTATTACAGTTTTGTAGGCTTCCCCAACATGTGGTTCCATGGCTAGAGGCACACCAAGGGGGCATCATGGGGGTAAGCTTTCGAGGCAGACAGAGCGTAGGCGGAAGGGAAAGGGAAAGAGGCAACGGTACAAAAGAGCGGACAGGTATTGGTGGTGGCGACGGCAGCGTCGGTTGGGTAATCTCATCCACTAAGGTAGGCTCGAACATCTGA

Protein sequence

MAVRLTSAWGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSLHLASGHWDVGLACGGSSSTQLLQFCRLPQHVVPWLEAHQGGIMGVSFRGRQSVGGRERERGNGTKERTGIGGGDGSVGWVISSTKVGSNI
BLAST of CmaCh09G006960 vs. TrEMBL
Match: A0A0A0L358_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620650 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLN RLE VRCIALGGL S ALN+L
Sbjct: 142 WGKGDGGRLGFGHENPVFVPTLNSRLESVRCIALGGLHSVALNAL 186

BLAST of CmaCh09G006960 vs. TrEMBL
Match: A0A059A0E1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01353 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL LG+E+ VF+PTLNP L+GVRCIALGGL S AL+SL
Sbjct: 127 WGKGDGGRLGLGHEDSVFVPTLNPNLDGVRCIALGGLHSVALDSL 171

BLAST of CmaCh09G006960 vs. TrEMBL
Match: A0A067KMI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08297 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSLHLASGHWDVG 64
           WGKGDGGRL  G+ENP F+PTLNP L+ VRCIALGG+ S AL S   A   W  G
Sbjct: 103 WGKGDGGRLGFGHENPAFVPTLNPNLDSVRCIALGGIHSVALTSFGQAFS-WGYG 156

BLAST of CmaCh09G006960 vs. TrEMBL
Match: B9R8I6_RICCO (Guanine nucleotide exchange factor P532, putative OS=Ricinus communis GN=RCOM_1600140 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLNP L+  +C+ALGG+ S AL SL
Sbjct: 130 WGKGDGGRLGFGHENPVFVPTLNPNLDPAKCVALGGVHSVALTSL 174

BLAST of CmaCh09G006960 vs. TrEMBL
Match: K4CEF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLN  L+ VR +ALGGL S ALNSL
Sbjct: 131 WGKGDGGRLGFGHENPVFVPTLNTHLDSVRSVALGGLHSVALNSL 175

BLAST of CmaCh09G006960 vs. TAIR10
Match: AT5G60870.1 (AT5G60870.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLE--GVRCIALGGLLSAAL 51
           WGKGDGGRL  G EN VF+P LNP  E   +RCIALGGL S AL
Sbjct: 124 WGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVAL 167

BLAST of CmaCh09G006960 vs. NCBI nr
Match: gi|659129314|ref|XP_008464624.1| (PREDICTED: ultraviolet-B receptor UVR8 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLNPRLE VRCIALGGL S ALNSL
Sbjct: 142 WGKGDGGRLGFGHENPVFVPTLNPRLESVRCIALGGLHSVALNSL 186

BLAST of CmaCh09G006960 vs. NCBI nr
Match: gi|449456530|ref|XP_004146002.1| (PREDICTED: E3 ubiquitin-protein ligase HERC2 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLN RLE VRCIALGGL S ALN+L
Sbjct: 142 WGKGDGGRLGFGHENPVFVPTLNSRLESVRCIALGGLHSVALNAL 186

BLAST of CmaCh09G006960 vs. NCBI nr
Match: gi|629081162|gb|KCW47607.1| (hypothetical protein EUGRSUZ_K01353 [Eucalyptus grandis])

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL LG+E+ VF+PTLNP L+GVRCIALGGL S AL+SL
Sbjct: 127 WGKGDGGRLGLGHEDSVFVPTLNPNLDGVRCIALGGLHSVALDSL 171

BLAST of CmaCh09G006960 vs. NCBI nr
Match: gi|643729679|gb|KDP37456.1| (hypothetical protein JCGZ_08297 [Jatropha curcas])

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSLHLASGHWDVG 64
           WGKGDGGRL  G+ENP F+PTLNP L+ VRCIALGG+ S AL S   A   W  G
Sbjct: 103 WGKGDGGRLGFGHENPAFVPTLNPNLDSVRCIALGGIHSVALTSFGQAFS-WGYG 156

BLAST of CmaCh09G006960 vs. NCBI nr
Match: gi|698495686|ref|XP_009793940.1| (PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Nicotiana sylvestris])

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1

Query: 9   WGKGDGGRLCLGYENPVFIPTLNPRLEGVRCIALGGLLSAALNSL 54
           WGKGDGGRL  G+ENPVF+PTLN  LE VR +ALGGL S ALNSL
Sbjct: 130 WGKGDGGRLGFGHENPVFVPTLNTNLESVRSVALGGLHSVALNSL 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L358_CUCSA1.8e-1280.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620650 PE=4 SV=1[more]
A0A059A0E1_EUCGR7.0e-1277.78Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01353 PE=4 SV=1[more]
A0A067KMI9_JATCU4.5e-1163.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08297 PE=4 SV=1[more]
B9R8I6_RICCO1.3e-1068.89Guanine nucleotide exchange factor P532, putative OS=Ricinus communis GN=RCOM_16... [more]
K4CEF7_SOLLC1.3e-1073.33Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60870.11.2e-1068.18 Regulator of chromosome condensation (RCC1) family protein[more]
Match NameE-valueIdentityDescription
gi|659129314|ref|XP_008464624.1|1.4e-1384.44PREDICTED: ultraviolet-B receptor UVR8 [Cucumis melo][more]
gi|449456530|ref|XP_004146002.1|2.6e-1280.00PREDICTED: E3 ubiquitin-protein ligase HERC2 [Cucumis sativus][more]
gi|629081162|gb|KCW47607.1|1.0e-1177.78hypothetical protein EUGRSUZ_K01353 [Eucalyptus grandis][more]
gi|643729679|gb|KDP37456.1|6.5e-1163.64hypothetical protein JCGZ_08297 [Jatropha curcas][more]
gi|698495686|ref|XP_009793940.1|8.5e-1175.56PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Nicotiana sylvestris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006960.1CmaCh09G006960.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3DG3DSA:2.130.10.30coord: 8..51
score: 4.

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh09G006960CmaCh01G012850Cucurbita maxima (Rimu)cmacmaB045