CmaCh09G006210.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G006210.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationCma_Chr09 : 2924217 .. 2927144 (-)
Sequence length639
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGCCGAATCTTCATCTCTAGCGGCTTGCATTTGCCATCTGTTTCTAACATCAGAATTCGAAAATGTTTGACTGCTTCAGGCATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTATGCGAGGCTCTCCCCTCGTCCATCTTTGCTTCTGTTTATTCAATTTTTTGAATCGAGTAACATTTGCTTCTTACTATTCGGGTTTGTGTTGCTTGATTGTCTAATTCAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTAAGTTCATCTTTCCCTCGCCTATGCATACATACACAAACTCTCATAACTAGTAGATCTTGAAATACAATGGTATCTTGGTCAGGTCTCTAAGTAAATTATGATGGGATAACTGCTTGTTAGGTCCTAAACATTGAAGTGATCTTCACCAAGAGGTTGTAAAATGTTGTTCTCCATAATTTGTTTGGTTTACTTGGGTCTTGCGTCCTCTGATACATCGGCTAACAAATATTTTCTTTCCCTTTTGGTCTGTTTAGAGATAGATTTCCACACTCTTTCCCCTCTCCAACCAATGTGGAATCTCAGAATTCACCCTCCTTGGGCCAGAGTACTTACTGGCACACTGCTCGATATTTGGCTCTGATATCATTTGTAACATCTCAAACCCACCACTAGCCAATATTGTTCTCTTTGGACTTTTTCTTTTAGTTTCTCCTCAAGGTTTTTGAAAAAAACACGTCTGTTAGCTAGAAATTTTTACACCCTTATAAGAGGTGTTTCGGAAGCTTCATTGGGAAGGACTTGAACAAATCAAAAAAGTGTCTACAAGAGAATTCCATATATATATATATTTTTTTTTGGAGAAAGGACAATGTAGGGAGAGATGACAACAATTTTCTTTATCTTTCTTACGAAGATGCACTAGCTTGAGAGAAGAGAGAACGTGGGGTTCCTTTTTTGAACCTTTGCAGAATGCAAGCCCCCATGAGCTGGGTTCAATCCTAAAATCTCACCTTTTCAGACTCCTCCTCCCTCTAAATAACCTTAATGAACGGCTTTGAAGGGACGCCACCGCATCTCCTTTATTATTAAGGGAGATAGGAGGGGGTTGGAAAAGGAGGCAATTAGAATCCAAACTCCAACAGTGAATAGCCCTTTACTATTGAATTCAAACACTTTTCAGAAGAATGAATGATCTGTTCGTTTAAGATTCTATATTAAGTAGCCTAACACTTGGCTACATTGTGAGATCCCACCTTAGTTGGAAAGGGAAACGAAACATTCTTTACAAGGATATGGAAATCTCTCCCTAGAAAACGCGTTTTAAAACAGTGAGGTTGACGACGATACATAATGGACCGAAGCGAATAATATTTGCTAACGGTGTGTTTTGGTTGTTACACACCTTCTAGTGATCCTAACCATGGTGGAGTCAAAATTAGTGAGTTGGAAATTTTGGAAAATTTCTCCTTTAGAGGCCGTGAGGTGTCCATTGATCTGTCCAAAAAGAAATAGAGACGCCATTATCCACCTTAACATTCAAAACCACCTTCATCCTCTGACTACCTTTAGCAATGAAGTTCCATGGACTTTTGCCGTTGTAGCTTCCATTTTTCCTATGAAATTGTTCATTCTGTCGACTCAATTCTCTCATCTGTTGTACCCTTTGGTTTCCAACTACTTTAATATGATAACTCTATTTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTTCATTAGAGCAGGTGATCATCAATCATTTTGCAACTTGTTTGTTGTTCTTCTTCTAGCATACCTTTGCTTTTTCCTCACTGTTCAGTGTTGGCTTGATGAAAAAGACAAGGAGGCATTGCCTTTTTCTCGCCGTGGAAACTAGTGAGCTAATGAAAAACATCAAGGAGGGGATGGCAACAATAGGACCCATAACTTTGTTCCGTTTACTTGTGCTATGTAACAGCCCTCGCGACATCTGATAAAATTGGAACCATACATACAAGATTAGTATAGCCCGTGAGCAAGGATGCACGTACAAATCAAGAAGTGGTATCAAAGCCAGATACCAGGCGGTGTGCCAACAAAGATGTTGGACTCCAAGGAATGTGGATTGTGAGATCCTACGTTAGTTGGAGAGGGGAATTAAGCATCTTTTATAAGGGTATGGAAACCTCTCCCTAACAGACACGTTTTAAAATTGTGAGGCTGATAGCGGTATGTAGCGAGCTAAAGCGGACAATATCTGCTAGCGGTGGCTTGGCTGTTGCATGCTATCAAGTGCAAAACAACCGATTATGATTTCAGAATTCCCAACCCCAGCCATAGATGTTTATTAATATTTCTGATAGACCATTACGAACATGATTTTTTTGCAATTAAACTGCTAAAACTTCAAGTTATTTCAACTATTTACAGATAGTGGAGGTGGCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGGTAACCTGGTTATTTTGCAACTTGGGCTATCCCAAAATTTAGCAGGAAGCTTTGGCCATAACTTCTACTATTTTTTTGACACCAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTCGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCAATAAGGAGTAGTTGCTAAGGTTAGCTCATTCATTAATGCCATGTTCTTCAACATCTTATGGATTAGTTTTTCTATAGGTTACTAAATGATATTTGAATTACAATTCGAATTAGTCATCCATTAATCTCAATCTTAGTTCAATTCGTATAACGGCCCAAGCTTTCCGCTAGTAGATAATGTCTTCTTTGGACTTTCCCTTCCGAACTTCCCCT

mRNA sequence

ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGCCGAATCTTCATCTCTAGCGGCTTGCATTTGCCATCTGTTTCTAACATCAGAATTCGAAAATGTTTGACTGCTTCAGGCATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTTCATTAGAGCAGATAGTGGAGGTGGCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTCGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCAATAAGGAGTAGTTGCTAAGGTTAGCTCATTCATTAATGCCATGTTCTTCAACATCTTATGGATTAGTTTTTCTATAGGTTACTAAATGATATTTGAATTACAATTCGAATTAGTCATCCATTAATCTCAATCTTAGTTCAATTCGTATAACGGCCCAAGCTTTCCGCTAGTAGATAATGTCTTCTTTGGACTTTCCCTTCCGAACTTCCCCT

Coding sequence (CDS)

ATGGGAAGCAAATCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGCCGAATCTTCATCTCTAGCGGCTTGCATTTGCCATCTGTTTCTAACATCAGAATTCGAAAATGTTTGACTGCTTCAGGCATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTTCATTAGAGCAGATAGTGGAGGTGGCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTCGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCAATAAGGAGTAG

Protein sequence

MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKE
Homology
[Close]
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match: GATC_VITVI (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-36
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60
           MGS++L +LK  ++ + L    F S      + S   IR    +    ++L PPD+ RLA
Sbjct: 1   MGSRALLLLKATTAETLL----FTSKS----TFSKALIRNSTRSFSTRSALLPPDLPRLA 60

Query: 61  ETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFEN 120
           ETARISLTP EVEE APKI QV+DWFGQLQ VDLQS+EP IRAD+ G N R+D+PETFEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 121 REAMIRAVPAFDEPYIKVPKVLNKE 146
           REA+I A+P+++EPY+KVPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match: GATC_RICCO (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-34
Identity = 82/146 (56.16%), Postives = 102/146 (69.86%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIM-ASLQPPDVLRL 60
           MGS++L +LK A     LK +I   +   +   S +  ++  +      +SLQPPDV RL
Sbjct: 1   MGSRALLLLKVALP---LKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61  AETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFE 120
           AETARISL   EVEE APKI QV+DWFGQLQ VDL S+EP IRADS G N R+D PETF 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 121 NREAMIRAVPAFDEPYIKVPKVLNKE 146
            REA+I AVP++++PY+KVPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match: GATC_POPTR (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa GN=GATC PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.2e-32
Identity = 84/149 (56.38%), Postives = 103/149 (69.13%), Query Frame = 1 

Query: 1   MGSKSLPVLKGAS----SFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDV 60
           MGS+++ +LKG S    S   L     IS     P+ S  R     TA+G  +SL+PPDV
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKIS-----PAPSIRRFTTKATANG--SSLEPPDV 60

Query: 61  LRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPE 120
            RLAETARISLTP +VEE  PKI QV+DW   L +VDL S+EP IRAD+ G N R+D PE
Sbjct: 61  ARLAETARISLTPQQVEEFGPKIRQVIDWHALL-SVDLDSVEPSIRADTEGDNLRHDNPE 120

Query: 121 TFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           TFENREA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 TFENREAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match: GATC_ARATH (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATC PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.9e-32
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1 

Query: 32  SVSNIRIRKCLTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQT 91
           S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V+DWFGQLQ 
Sbjct: 42  SRKNHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQ 101

Query: 92  VDLQSMEPFIRADSGGGNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           VD+ S+EP IRA+  GGN R DAPETF+NR+++  ++P+F++ Y+KVPK+LNKE
Sbjct: 102 VDVNSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

[Close]
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match: GATC_ORYSI (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATC PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 73/129 (56.59%), Postives = 90/129 (69.77%), Query Frame = 1 

Query: 18  LKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLAETARISLTPGEVEELAP 77
           L+RR   SS    P      I     A+G   +L+PPD+ RLA  ARISL+P E EE AP
Sbjct: 30  LRRRSLSSS----PPYVTPGIPAAAAAAG-SGALEPPDLPRLANAARISLSPEEAEEFAP 89

Query: 78  KIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQ-RNDAPETFENREAMIRAVPAFDEPYI 137
           KI QVVDWFGQLQ VDL+S+EP +RA +  GN  R D PETF NR+A+I +VP++D+PYI
Sbjct: 90  KIRQVVDWFGQLQAVDLESVEPSLRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYI 149

Query: 138 KVPKVLNKE 146
           KVP+VLNKE
Sbjct: 150 KVPRVLNKE 153

[Close]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match: A0A0A0LJU5_CUCSA (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus GN=GATC PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.9e-55
Identity = 115/145 (79.31%), Postives = 124/145 (85.52%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60
           MGSK+LP+LKGASSF SLKR+IFIS+  H   VSNI IR   TASGI ASLQPPDV RLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  ETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFEN 120
           +TARISLTP + EE APKI QVVDWFGQLQTVDLQS+EP IRAD+ GG+QRND PETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIRAVPAFDEPYIKVPKVLNKE 146
           REAMI AVP FDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match: M5XT68_PRUPE (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Prunus persica GN=GATC PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 91/148 (61.49%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGL--HLPSVSNIRIR-KCLTASGIMASLQPPDVL 60
           MGS++L ++KG SS S  K ++F +     H P  +N  +R  C T      SL+PPD+ 
Sbjct: 1   MGSRALLLVKGVSSSSLPKNQLFCNFNCKSHFPRPNNNWVRTNCSTTQSSGPSLEPPDLP 60

Query: 61  RLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPET 120
           RLA+TARISLTP EVEE APKIG V+DWFGQLQ VDLQS+EP IRAD+ G + R D PET
Sbjct: 61  RLAQTARISLTPHEVEEFAPKIGLVIDWFGQLQDVDLQSVEPSIRADTEGDSFRADIPET 120

Query: 121 FENREAMIRAVPAFDEPYIKVPKVLNKE 146
           FENREAMI AVP ++EPYIKVPKVLNKE
Sbjct: 121 FENREAMIAAVPNYEEPYIKVPKVLNKE 148

[Close]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match: V4UNJ8_9ROSI (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Citrus clementina GN=GATC PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.6e-35
Identity = 89/153 (58.17%), Postives = 108/153 (70.59%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASS----FSSLKRRIFISSG----LHLPSVSNIRIRKCLTASGIMASLQ 60
           MGS+ L +LKGA+     F++ K  IF S       +     N R R C T +   +SL+
Sbjct: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 60

Query: 61  PPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRN 120
           PPDV RLA+TARISLTP EVEE APKI QV+DWFGQLQ VDL S++P +RADS  G  R 
Sbjct: 61  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRE 120

Query: 121 DAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           D P+TF+NRE+MI AVP++DEPYIKVPKVLNKE
Sbjct: 121 DIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152

[Close]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match: A0A067GMN3_CITSI (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Citrus sinensis GN=GATC PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.6e-35
Identity = 89/153 (58.17%), Postives = 108/153 (70.59%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASS----FSSLKRRIFISSG----LHLPSVSNIRIRKCLTASGIMASLQ 60
           MGS+ L +LKGA+     F++ K  IF S       +     N R R C T +   +SL+
Sbjct: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 60

Query: 61  PPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRN 120
           PPDV RLA+TARISLTP EVEE APKI QV+DWFGQLQ VDL S++P +RADS  G  R 
Sbjct: 61  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADSETGYLRE 120

Query: 121 DAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           D P+TF+NRE+MI AVP++DEPYIKVPKVLNKE
Sbjct: 121 DIPKTFKNRESMIAAVPSYDEPYIKVPKVLNKE 152

[Close]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match: A0A0B0P3Y3_GOSAR (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Gossypium arboreum GN=GATC PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 85/151 (56.29%), Postives = 105/151 (69.54%), Query Frame = 1 

Query: 1   MGSKSLPVLKG------ASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPP 60
           MGS++L +L         SSF S     F+         +N+RIR   T +   +SLQPP
Sbjct: 1   MGSRALLMLTNFNFKATVSSFGSASNPFFLIK-------NNLRIRNFSTKT--RSSLQPP 60

Query: 61  DVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDA 120
           D+  LAETARISL P EVEE APKIGQV+DWFGQLQ VDL ++EP IRAD+ G N R D 
Sbjct: 61  DLPGLAETARISLAPNEVEEFAPKIGQVIDWFGQLQAVDLDNVEPAIRADTEGDNLREDV 120

Query: 121 PETFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           P+TFEN+EA+I +VP+++EPYIKVPKVLNKE
Sbjct: 121 PQTFENKEALIASVPSYEEPYIKVPKVLNKE 142

[Close]
BLAST of CmaCh09G006210.1 vs. TAIR10
Match: AT4G32915.1 (AT4G32915.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-33
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1 

Query: 32  SVSNIRIRKCLTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVVDWFGQLQT 91
           S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V+DWFGQLQ 
Sbjct: 42  SRKNHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQ 101

Query: 92  VDLQSMEPFIRADSGGGNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKE 146
           VD+ S+EP IRA+  GGN R DAPETF+NR+++  ++P+F++ Y+KVPK+LNKE
Sbjct: 102 VDVNSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

[Close]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match: gi|659132234|ref|XP_008466091.1| (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60
           MGSK+LP+LKGASSF SLKR+IFIS+  H   VSNI IRK  TASG++ASLQPPDV RLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFEN 120
           +TARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EP IRAD+ GGNQRND PETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIRAVPAFDEPYIKVPKVLNKE 146
           REAMI AVP FDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match: gi|449436902|ref|XP_004136231.1| (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 115/145 (79.31%), Postives = 124/145 (85.52%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60
           MGSK+LP+LKGASSF SLKR+IFIS+  H   VSNI IR   TASGI ASLQPPDV RLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  ETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFEN 120
           +TARISLTP + EE APKI QVVDWFGQLQTVDLQS+EP IRAD+ GG+QRND PETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIRAVPAFDEPYIKVPKVLNKE 146
           REAMI AVP FDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match: gi|596298739|ref|XP_007227542.1| (hypothetical protein PRUPE_ppa012946mg [Prunus persica])

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 91/148 (61.49%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGL--HLPSVSNIRIR-KCLTASGIMASLQPPDVL 60
           MGS++L ++KG SS S  K ++F +     H P  +N  +R  C T      SL+PPD+ 
Sbjct: 1   MGSRALLLVKGVSSSSLPKNQLFCNFNCKSHFPRPNNNWVRTNCSTTQSSGPSLEPPDLP 60

Query: 61  RLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPET 120
           RLA+TARISLTP EVEE APKIG V+DWFGQLQ VDLQS+EP IRAD+ G + R D PET
Sbjct: 61  RLAQTARISLTPHEVEEFAPKIGLVIDWFGQLQDVDLQSVEPSIRADTEGDSFRADIPET 120

Query: 121 FENREAMIRAVPAFDEPYIKVPKVLNKE 146
           FENREAMI AVP ++EPYIKVPKVLNKE
Sbjct: 121 FENREAMIAAVPNYEEPYIKVPKVLNKE 148

[Close]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match: gi|694365164|ref|XP_009361499.1| (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 87/145 (60.00%), Postives = 108/145 (74.48%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGLHLPSVSNIRIRKCLTASGIMASLQPPDVLRLA 60
           MGS++L +LKG S  SSL +++     L   +++ +R   C T       L+PPD+ RLA
Sbjct: 1   MGSRALLLLKGLSC-SSLPKKLLFPKVLPPRNINWVRTN-CSTPKSSGLPLEPPDLPRLA 60

Query: 61  ETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPETFEN 120
           ETARI+LTP EVEE APKIGQV+DWFGQLQ VDL+++EP IRAD+ G + R D PETFEN
Sbjct: 61  ETARITLTPHEVEEFAPKIGQVIDWFGQLQAVDLETVEPSIRADTEGDSFREDIPETFEN 120

Query: 121 REAMIRAVPAFDEPYIKVPKVLNKE 146
           REAMI AVP ++EPYIKVPKVLNKE
Sbjct: 121 REAMIAAVPNYEEPYIKVPKVLNKE 143

[Close]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match: gi|645226657|ref|XP_008220142.1| (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Prunus mume])

HSP 1 Score: 158.7 bits (400), Expect = 7.8e-36
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 1 

Query: 1   MGSKSLPVLKGASSFSSLKRRIFISSGL--HLPSVSNIRIR-KCLTASGIMASLQPPDVL 60
           MGS++L ++KG SS S  K ++F +     + P + N  +R  C T      SL+PPD+ 
Sbjct: 1   MGSRALLLVKGVSSSSLPKNQLFCNFNCKSNFPRLKNNWVRTNCSTTQSSGPSLEPPDLP 60

Query: 61  RLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPFIRADSGGGNQRNDAPET 120
           RLA+TARISLTP EVEE APKIG V+DWFGQLQ VDLQS+EP IRAD+ G + R D PET
Sbjct: 61  RLAQTARISLTPHEVEEFAPKIGLVIDWFGQLQDVDLQSVEPSIRADTEGDSFRADIPET 120

Query: 121 FENREAMIRAVPAFDEPYIKVPKVLNKE 146
           FENREAMI AVP ++  YIKVPKVLNKE
Sbjct: 121 FENREAMIAAVPNYEGLYIKVPKVLNKE 148

The following BLAST results are available for this feature:
BLAST of CmaCh09G006210.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GATC_VITVI1.6e-3657.24Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
GATC_RICCO1.9e-3456.16Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
GATC_POPTR5.2e-3256.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
GATC_ARATH8.9e-3257.02Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ar... [more]
GATC_ORYSI2.2e-3056.59Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of CmaCh09G006210.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJU5_CUCSA8.9e-5579.31Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
M5XT68_PRUPE1.5e-3861.49Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Pr... [more]
V4UNJ8_9ROSI4.6e-3558.17Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ci... [more]
A0A067GMN3_CITSI4.6e-3558.17Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ci... [more]
A0A0B0P3Y3_GOSAR1.3e-3456.29Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Go... [more]
BLAST of CmaCh09G006210.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32915.15.0e-3357.02 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmaCh09G006210.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132234|ref|XP_008466091.1|1.4e-5680.69PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
gi|449436902|ref|XP_004136231.1|1.3e-5479.31PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
gi|596298739|ref|XP_007227542.1|2.2e-3861.49hypothetical protein PRUPE_ppa012946mg [Prunus persica][more]
gi|694365164|ref|XP_009361499.1|1.2e-3660.00PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
gi|645226657|ref|XP_008220142.1|7.8e-3659.46PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003837Asp/Glu-ADT_csu
Vocabulary: Biological Process
TermDefinition
GO:0006450regulation of translational fidelity
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0016874 ligase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh09G006210CmaCh09G006210gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh09G006210.1CmaCh09G006210.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G006210.1.three_prime_UTR.1CmaCh09G006210.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G006210.1.CDS.5CmaCh09G006210.1.CDS.5CDS
CmaCh09G006210.1.CDS.4CmaCh09G006210.1.CDS.4CDS
CmaCh09G006210.1.CDS.3CmaCh09G006210.1.CDS.3CDS
CmaCh09G006210.1.CDS.2CmaCh09G006210.1.CDS.2CDS
CmaCh09G006210.1.CDS.1CmaCh09G006210.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G006210.1.exon.5CmaCh09G006210.1.exon.5exon
CmaCh09G006210.1.exon.4CmaCh09G006210.1.exon.4exon
CmaCh09G006210.1.exon.3CmaCh09G006210.1.exon.3exon
CmaCh09G006210.1.exon.2CmaCh09G006210.1.exon.2exon
CmaCh09G006210.1.exon.1CmaCh09G006210.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 48..143
score: 18
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 67..138
score: 5.
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMsTIGR00135TIGR00135coord: 55..142
score: 2.0
IPR003837Glu-tRNAGln amidotransferase C subunitunknownSSF141000Glu-tRNAGln amidotransferase C subunitcoord: 51..141
score: 2.35
NoneNo IPR availablePANTHERPTHR13373FROUNT PROTEIN-RELATEDcoord: 19..145
score: 8.0
NoneNo IPR availablePANTHERPTHR13373:SF22GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIALcoord: 19..145
score: 8.0