CmaCh09G005820.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G005820.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTarget SNARE coiled-coil domain protein
LocationCma_Chr09 : 2678812 .. 2682116 (-)
Sequence length729
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTGCTCTCACCTTCCGAACCGAAGACTCTGAAACTGATCCTCGCAATTCGTCTGTTTCCGATCAGATTATTCGATTTCGGATTATCTTTTCATTCTGTATCTAATGGCGTCCAGTTCGTTTCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGTATTGTCATCGTTCTTATCATGCTAACTTCCAGTACATTAACAGAAATAGAGGTATTGCAAGAACTGCGAGTTTTCTGTCACTTGTCTTGGGGAATTTCTCAAATTGTTTCTATGTTTACCGGTGTTAAGAATGATGATTACTCAATTCATGTCGCTTAATTGCGATCGTCCTTTGTTTTGAGGTATTCAGGGAGGGGCTTAGCACAAGAACGGCGGCTGCTTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGTCAAGTTAAAAGGCTTAGAAATGTGAGTATTATGGTTTTACGTTAATCTATGGTACAGCTTTGCACTTAGGTTTATTGAATTGCAAACTAGAACACGCAGCTAAGCCTTTATTGAAAGCACTCGGTGCTGGTAACTTCATCGAATAACTAGATATAAAGTACTCGAGATAAATCTGAACAGAAATCTTCAGATTTCTTGCGGTGCTCCTATAATATTTGAATTTAGCTATGTTCGAGGTTGATCTACTTGTAATGGTACTCTTGGAATTTGCATTGCTCGTGGTTCCTTTCTTAATGGAATTTACGAGCTGTACGTTCTGTATCAATACATCCCACATGGTATAGGTGCATGCTATGTGCTTAGTGATCGATTTCATTATCATGGCGGTCACAGACATTGTTTTCTTTCTGTGAAATTTTGTGAGTTTCCCTCCCTTCTTAGAAGAACGGAATATATGATACATTACATTCGACTGGTACAAGTTGAATCCATATTTACGAGTCTTTGTAGTTGCTGTTCTTGTCTATTGGCTCATCACCATTCAAAACGTATCATAGGCAATGAAAGGAATGCGTAATAGTAATGTAACAAGCATATAAATATAAATTATAATTGTCTGAAGAATTCTACTGAAACACAAACTGCATAGCATTCATTATTAAATGATCAACAAAATTCAGACGAACTAATTGCTTACCTTGTTTTCCTTCTTAAAAATGAGTTTGGAAAATAAAACCCCTGCAAATTCAAGACACAAAAACACGAGGCAAACCACAGTTTGAACCGTGCACAATTCTCTATCAACTACCATTAAAAGACTTCTAAAATCTCTTATCGAATTCATCCATGGTCATTCTGTTTTCTGGCAGTGGCTGTAATGCAGCGCTCACCTTCCCCCCACCTCCAACAACTTTTGATTATTATTGTCCATCTTCTTTTTGCTAAGTTGGAGTTGTTCCTTGGACGTCTTTCTCCGCTGTTTTTGGCTCGTATCATTTTTCTCTACAATTTGCCTCCGAATGCAATTTTCTTTTTTCCTGTTCTTTTTCTTCTTCTTCTTCTTCAGCATCTTAGTTGTACATTAGCAGCCTGATGGTTTGTTCCTTGAGTGGAGATTTGGTTTCTACAACAGTTGGTCTAGGAAATTGGTTTGCCAACACACCAGTTGTATGCCATCAAAATCTCGAAAATGAGGGGCATCTTTGCTTGACTGGCCAATTTTCTTCTTACAATAACATTGTTATTATTTGTAGAAAGATTTGTTTCTAAACGTTGAGCTAAGCGTTCTAGTGGGTTTGGTTTGAGATGGTACATGCCTAATTGTATGGCGGTCAATGTTGAGAAGCCCCTTCTGTCTCATATTATCGACGAAAGCTCATCTTGTTTCTTATTGAGTAAAAAAGAACAGATTTTGTAATGTTTTCTGGTCCAAAAGTCTCATAGTTTTATCATAATCTTAATCTTGTTGAGATCCTGTACAGATTATATATGCCAATTCGTTTAATTAATTCCATATTCGGCTTTTGATCTTTACAGATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGGTATGCAATTTTTTTCTTAATGCTATTCATAGTTGTCATATTTCCATTTGTTTTTTGTATGTTGATTCAATTCTTGGTTTTTACTTACTGACGTTCTTACTTGTGAGAAAACTCTTTAGGTCCTGATTACTTGAGAAAATGGAAAATGATGGATAGAATGAGAATTAAAATTTTAAATATTGCATTTATTAAAATTACATTGGTACAAGGATCGGAGTGTTAATTATTCCAATTAATTGATTCCTCTTGGGATGATGGCAGGGAATGGAGTAAAATTATACAGGTTGCCTCATTTTTTATCCTCTAAGCCCACCGCTAGTAGTTAATGTCCTCTCTGGGCTTTCCCTTTCGGGTTTCCCTTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTTCATACCGTTATAAAGAAGTTTCGTTGTCCTCCTCATCTGGTGTGGGATCTCACAATCCACCCTCCTTCAGGGCTCAGCGTCCTTGCTGGCACACTACCTCGTGTCCACTCCCCTTTAAGGCTTAGCCTCCTCACTGGCACATTGCCCGATGTCTGGCTCTGATACCATTTGTAACGTCTCAAACGCACCACTAGTCTCATATTTGATACAATTTGCTAACGATGGGCTTGAACCGTTACACTACCTCTTGCCAAAAGATAGAGTGGACCAAAATAGAGAACAAAAAGAACGAACAAATCAACGGTTCCCTTGATAACTTCAGTATAAAATGCATAGAGCTCTATCAGATTAAAAGAAACTAACTAAAGAAAACCAGTCTCATATCAACTTGTATCGGTTCCAAACGTGTGCAATGGCCAATATTTTTTTAGTTCTAACATATCCGATCATCTGTTTTCGGTCTTGTTGCAGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCACGTCGTCCAGGTTGTCATATTTGCATTGATCTGTTTCTTTATAGTGTACATGTGGATGAAAATATCCAGAAAATGAATGTTCTTCCTCATTTTCTTCCTCATTATGAATGAAAAACCAGTTTGCTGGCCGGCAAAAAAGGGAAAAGAAACAGGAATGATGTTGAATATATTATCGCTGCCTCCCCCTCAGCTTAGAATATGGGACAGTGAAAATAGGCTTTTGATTTTCTCTTATAGGAACATTTTTGGTATACTTTTATACGCTATAAAGATTTGTATTGTGCCTCA

mRNA sequence

TCTGTGCTCTCACCTTCCGAACCGAAGACTCTGAAACTGATCCTCGCAATTCGTCTGTTTCCGATCAGATTATTCGATTTCGGATTATCTTTTCATTCTGTATCTAATGGCGTCCAGTTCGTTTCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGGAGGGGCTTAGCACAAGAACGGCGGCTGCTTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGTCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCACGTCGTCCAGGTTGTCATATTTGCATTGATCTGTTTCTTTATAGTGTACATGTGGATGAAAATATCCAGAAAATGAATGTTCTTCCTCATTTTCTTCCTCATTATGAATGAAAAACCAGTTTGCTGGCCGGCAAAAAAGGGAAAAGAAACAGGAATGATGTTGAATATATTATCGCTGCCTCCCCCTCAGCTTAGAATATGGGACAGTGAAAATAGGCTTTTGATTTTCTCTTATAGGAACATTTTTGGTATACTTTTATACGCTATAAAGATTTGTATTGTGCCTCA

Coding sequence (CDS)

ATGGCGTCCAGTTCGTTTCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGGAGGGGCTTAGCACAAGAACGGCGGCTGCTTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGTCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCACGTCGTCCAGGTTGTCATATTTGCATTGATCTGTTTCTTTATAGTGTACATGTGGATGAAAATATCCAGAAAATGA

Protein sequence

MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFALICFFIVYMWMKISRK
Homology
[Close]
BLAST of CmaCh09G005820.1 vs. Swiss-Prot
Match: BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.3e-44
Identity = 89/138 (64.49%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQ 60
           MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH Q
Sbjct: 1   MASNPHRSGAGGSLYGG-AAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVI 120
           V++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N+R+LN  II++G+NH++ VV+
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVL 120

Query: 121 FALICFFIVYMWMKISRK 137
           FAL+ FF++Y+W K+ ++
Sbjct: 121 FALLVFFVLYIWSKMFKR 137

[Close]
BLAST of CmaCh09G005820.1 vs. Swiss-Prot
Match: BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.0e-43
Identity = 87/136 (63.97%), Postives = 114/136 (83.82%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N+R+LN  II++G+NH++ VV+FA
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L+ FFI+YMW K+ ++
Sbjct: 121 LLLFFILYMWSKMFKR 134

[Close]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match: A0A0A0LHL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889980 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-60
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AA +RSREGLSTR AA+SDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAHFRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+NVRRLNKKIIQNGSNHVVQVV+FA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWMKISRK 137
           LICFFIVYMW K+SRK
Sbjct: 121 LICFFIVYMWSKMSRK 136

[Close]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match: A0A0D2SM53_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G036600 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.5e-48
Identity = 101/137 (73.72%), Postives = 120/137 (87.59%), Query Frame = 1 

Query: 1   MASSSFR-GGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQV 60
           MAS+S R GG SFY G AAPYRSR+GLSTR  A+SDEIQL+IDPM  DLDDEI GL SQV
Sbjct: 1   MASTSNRTGGGSFYGG-AAPYRSRDGLSTRPVASSDEIQLRIDPMHADLDDEISGLRSQV 60

Query: 61  KRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIF 120
           K+LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II++GSNH+V VV+F
Sbjct: 61  KQLRNVAQEIGSEAKFQKDFLDQLQMTMIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLF 120

Query: 121 ALICFFIVYMWMKISRK 137
           AL CFF+VYMW K+SR+
Sbjct: 121 ALFCFFVVYMWSKVSRR 136

[Close]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match: A0A061FE80_THECC (Target SNARE coiled-coil domain protein OS=Theobroma cacao GN=TCM_034457 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.8e-48
Identity = 97/136 (71.32%), Postives = 116/136 (85.29%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+S R G   + G  APYRSREGLSTR  A+SDEIQL+IDPM  DLDDEI GL SQVK
Sbjct: 1   MASTSNRAGGGSFYGGGAPYRSREGLSTRPVASSDEIQLRIDPMHADLDDEITGLRSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II++GSNH+V VV+FA
Sbjct: 61  QLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L CFF+VYMW K+SR+
Sbjct: 121 LFCFFVVYMWSKLSRR 136

[Close]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match: A0A067KZ44_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15854 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 98/136 (72.06%), Postives = 119/136 (87.50%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MA+SS RGGS FY G AAPYRS++GLSTR AA+SDEIQL+IDPM  D DDEI GL SQVK
Sbjct: 1   MAASSSRGGS-FYGG-AAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II+NG NH+V VV+FA
Sbjct: 61  QLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L+CF +VY+W K+SR+
Sbjct: 121 LLCFTVVYLWSKVSRR 134

[Close]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match: I3SAI6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.6e-45
Identity = 98/136 (72.06%), Postives = 119/136 (87.50%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MA++S R GS FY G AAPYRS +GLSTR  AAS+EIQL+IDPM  DLDDE+ GLHSQV+
Sbjct: 1   MAANSQRPGS-FYGG-AAPYRSSDGLSTRPGAASEEIQLRIDPM--DLDDELTGLHSQVR 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           RL+NIA +IGTE K+Q DFL+QLQMT+IKAQAGVK+N+RRLNK IIQ+GSNH+V V++FA
Sbjct: 61  RLKNIAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L+CFFIVY+W K+SRK
Sbjct: 121 LVCFFIVYLWSKMSRK 132

[Close]
BLAST of CmaCh09G005820.1 vs. TAIR10
Match: AT4G14600.1 (AT4G14600.1 Target SNARE coiled-coil domain protein)

HSP 1 Score: 177.9 bits (450), Expect = 4.1e-45
Identity = 89/138 (64.49%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQ 60
           MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH Q
Sbjct: 1   MASNPHRSGAGGSLYGG-AAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVI 120
           V++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N+R+LN  II++G+NH++ VV+
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVL 120

Query: 121 FALICFFIVYMWMKISRK 137
           FAL+ FF++Y+W K+ ++
Sbjct: 121 FALLVFFVLYIWSKMFKR 137

[Close]
BLAST of CmaCh09G005820.1 vs. TAIR10
Match: AT1G29060.1 (AT1G29060.1 Target SNARE coiled-coil domain protein)

HSP 1 Score: 174.5 bits (441), Expect = 4.5e-44
Identity = 87/136 (63.97%), Postives = 114/136 (83.82%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N+R+LN  II++G+NH++ VV+FA
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L+ FFI+YMW K+ ++
Sbjct: 121 LLLFFILYMWSKMFKR 134

[Close]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match: gi|659132416|ref|XP_008466185.1| (PREDICTED: bet1-like protein At1g29060 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+NVRRLNKKIIQNGSNHV+QVV+FA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVIQVVVFA 120

Query: 121 LICFFIVYMWMKISRK 137
           LICFFIVYMW K+SRK
Sbjct: 121 LICFFIVYMWAKMSRK 136

[Close]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match: gi|449436970|ref|XP_004136265.1| (PREDICTED: bet1-like protein At1g29060 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-60
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AA +RSREGLSTR AA+SDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAHFRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+NVRRLNKKIIQNGSNHVVQVV+FA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWMKISRK 137
           LICFFIVYMW K+SRK
Sbjct: 121 LICFFIVYMWSKMSRK 136

[Close]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match: gi|823238824|ref|XP_012452066.1| (PREDICTED: bet1-like protein At4g14600 [Gossypium raimondii])

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 101/137 (73.72%), Postives = 120/137 (87.59%), Query Frame = 1 

Query: 1   MASSSFR-GGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQV 60
           MAS+S R GG SFY G AAPYRSR+GLSTR  A+SDEIQL+IDPM  DLDDEI GL SQV
Sbjct: 1   MASTSNRTGGGSFYGG-AAPYRSRDGLSTRPVASSDEIQLRIDPMHADLDDEISGLRSQV 60

Query: 61  KRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIF 120
           K+LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II++GSNH+V VV+F
Sbjct: 61  KQLRNVAQEIGSEAKFQKDFLDQLQMTMIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLF 120

Query: 121 ALICFFIVYMWMKISRK 137
           AL CFF+VYMW K+SR+
Sbjct: 121 ALFCFFVVYMWSKVSRR 136

[Close]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match: gi|590595753|ref|XP_007018146.1| (Target SNARE coiled-coil domain protein [Theobroma cacao])

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 97/136 (71.32%), Postives = 116/136 (85.29%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+S R G   + G  APYRSREGLSTR  A+SDEIQL+IDPM  DLDDEI GL SQVK
Sbjct: 1   MASTSNRAGGGSFYGGGAPYRSREGLSTRPVASSDEIQLRIDPMHADLDDEITGLRSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II++GSNH+V VV+FA
Sbjct: 61  QLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L CFF+VYMW K+SR+
Sbjct: 121 LFCFFVVYMWSKLSRR 136

[Close]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match: gi|802570014|ref|XP_012067949.1| (PREDICTED: bet1-like protein At4g14600 [Jatropha curcas])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 98/136 (72.06%), Postives = 119/136 (87.50%), Query Frame = 1 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MA+SS RGGS FY G AAPYRS++GLSTR AA+SDEIQL+IDPM  D DDEI GL SQVK
Sbjct: 1   MAASSSRGGS-FYGG-AAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120
           +LRN+A +IG+EAKFQ DFLDQLQMT+IKAQAGVK+N+R+LNK II+NG NH+V VV+FA
Sbjct: 61  QLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFA 120

Query: 121 LICFFIVYMWMKISRK 137
           L+CF +VY+W K+SR+
Sbjct: 121 LLCFTVVYLWSKVSRR 134

The following BLAST results are available for this feature:
BLAST of CmaCh09G005820.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BETL1_ARATH7.3e-4464.49Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1[more]
BETL2_ARATH8.0e-4363.97Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1[more]
BLAST of CmaCh09G005820.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHL4_CUCSA1.7e-6091.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889980 PE=4 SV=1[more]
A0A0D2SM53_GOSRA7.5e-4873.72Uncharacterized protein OS=Gossypium raimondii GN=B456_010G036600 PE=4 SV=1[more]
A0A061FE80_THECC9.8e-4871.32Target SNARE coiled-coil domain protein OS=Theobroma cacao GN=TCM_034457 PE=4 SV... [more]
A0A067KZ44_JATCU1.1e-4672.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15854 PE=4 SV=1[more]
I3SAI6_LOTJA4.6e-4572.06Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmaCh09G005820.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14600.14.1e-4564.49 Target SNARE coiled-coil domain protein[more]
AT1G29060.14.5e-4463.97 Target SNARE coiled-coil domain protein[more]
BLAST of CmaCh09G005820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659132416|ref|XP_008466185.1|1.3e-6191.91PREDICTED: bet1-like protein At1g29060 [Cucumis melo][more]
gi|449436970|ref|XP_004136265.1|2.5e-6091.18PREDICTED: bet1-like protein At1g29060 [Cucumis sativus][more]
gi|823238824|ref|XP_012452066.1|1.1e-4773.72PREDICTED: bet1-like protein At4g14600 [Gossypium raimondii][more]
gi|590595753|ref|XP_007018146.1|1.4e-4771.32Target SNARE coiled-coil domain protein [Theobroma cacao][more]
gi|802570014|ref|XP_012067949.1|1.6e-4672.06PREDICTED: bet1-like protein At4g14600 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh09G005820CmaCh09G005820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh09G005820.1CmaCh09G005820.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G005820.1.three_prime_UTR.1CmaCh09G005820.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G005820.1.CDS.4CmaCh09G005820.1.CDS.4CDS
CmaCh09G005820.1.CDS.3CmaCh09G005820.1.CDS.3CDS
CmaCh09G005820.1.CDS.2CmaCh09G005820.1.CDS.2CDS
CmaCh09G005820.1.CDS.1CmaCh09G005820.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G005820.1.five_prime_UTR.1CmaCh09G005820.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G005820.1.exon.4CmaCh09G005820.1.exon.4exon
CmaCh09G005820.1.exon.3CmaCh09G005820.1.exon.3exon
CmaCh09G005820.1.exon.2CmaCh09G005820.1.exon.2exon
CmaCh09G005820.1.exon.1CmaCh09G005820.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 37..104
score: 0.
IPR000727Target SNARE coiled-coil homology domainPROFILEPS50192T_SNAREcoord: 42..104
score: 11
NoneNo IPR availableGENE3DG3DSA:1.20.5.110coord: 34..103
score: 2.
NoneNo IPR availablePANTHERPTHR12791GOLGI SNARE BET1-RELATEDcoord: 10..136
score: 8.4
NoneNo IPR availablePANTHERPTHR12791:SF32SUBFAMILY NOT NAMEDcoord: 10..136
score: 8.4
NoneNo IPR availableunknownSSF58038SNARE fusion complexcoord: 37..103
score: 7.85