CmaCh08G010300.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G010300.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr08 : 6441742 .. 6442499 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAACAAAGTGACCAATAATTCCATCTTCCCAATGCCATTTCTTCTTATAAACCACATCTTTCCCTCACCAAACCTTCTCTTCTTCCTCTTCAAAACCCTAATCTCGAACCGTTTCATGGATATTGATCTCTCCTTCGGCTTTCAGGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAGTAAGATCGATAATTATTATTATGAAATATTTCTATTGTTCTCGTTAATTGTGTGTGTATATGTAGAGTAAGATCTCCGTTTGATAAATATTTTATTTATAAACATGAAAACTCATATATTTATAAATCTCGGTTAAGATTATATATATATATATATATAATATCGACAACAGAATATGTGTTTTTATTCTCCAAATCAGAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

mRNA sequence

ATGCCAAAACAAAGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

Coding sequence (CDS)

ATGCCAAAACAAAGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

Protein sequence

MPKQSGRRRYRSSLSSSSSSPFFRSLFMASLKEHYVSTSLTSTKSRACFFLFLLLLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQQFEAAMHEVPSGPNPTTNKTFLLIYIDLLPEYIFIFY

Homology

[Close]

BLAST of CmaCh08G010300.1 vs. TrEMBL
Match: A0A0A0LNB8_CUCSA (CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 44  KSRACFFLFLL-LLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQ 103
           KS+ACFFLFLL LLL+VVP+  ST P+     TPSRPPS+ +AM                
Sbjct: 10  KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 104 QFEAAMHEVPSGPNPTTNK 122
            FEAAMHEVPSGPNPT+NK
Sbjct: 70  -FEAAMHEVPSGPNPTSNK 66

[Close]

BLAST of CmaCh08G010300.1 vs. NCBI nr
Match: gi|700206342|gb|KGN61461.1| (CLAVATA3/ESR-related protein [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 44  KSRACFFLFLL-LLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQ 103
           KS+ACFFLFLL LLL+VVP+  ST P+     TPSRPPS+ +AM                
Sbjct: 10  KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 104 QFEAAMHEVPSGPNPTTNK 122
            FEAAMHEVPSGPNPT+NK
Sbjct: 70  -FEAAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:

BLAST of CmaCh08G010300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G010300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNB8_CUCSA	1.4e-09	56.96	CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1	[more]

BLAST of CmaCh08G010300.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G010300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206342\|gb\|KGN61461.1\|	2.0e-09	56.96	CLAVATA3/ESR-related protein [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh08G010300	CmaCh08G010300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh08G010300.1	CmaCh08G010300.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G010300.1.CDS.3	CmaCh08G010300.1.CDS.3	CDS
CmaCh08G010300.1.CDS.2	CmaCh08G010300.1.CDS.2	CDS
CmaCh08G010300.1.CDS.1	CmaCh08G010300.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G010300.1.exon.3	CmaCh08G010300.1.exon.3	exon
CmaCh08G010300.1.exon.2	CmaCh08G010300.1.exon.2	exon
CmaCh08G010300.1.exon.1	CmaCh08G010300.1.exon.1	exon