CmaCh08G010300 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G010300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr08 : 6441742 .. 6442499 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAACAAAGTGACCAATAATTCCATCTTCCCAATGCCATTTCTTCTTATAAACCACATCTTTCCCTCACCAAACCTTCTCTTCTTCCTCTTCAAAACCCTAATCTCGAACCGTTTCATGGATATTGATCTCTCCTTCGGCTTTCAGGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAGTAAGATCGATAATTATTATTATGAAATATTTCTATTGTTCTCGTTAATTGTGTGTGTATATGTAGAGTAAGATCTCCGTTTGATAAATATTTTATTTATAAACATGAAAACTCATATATTTATAAATCTCGGTTAAGATTATATATATATATATATATAATATCGACAACAGAATATGTGTTTTTATTCTCCAAATCAGAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

mRNA sequence

ATGCCAAAACAAAGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

Coding sequence (CDS)

ATGCCAAAACAAAGTGGGCGTCGTCGTTATCGATCATCATTATCCTCATCGTCATCATCACCTTTTTTCCGCTCCCTTTTCATGGCAAGTCTTAAAGAGCATTATGTCTCCACAAGTTTAACCTCAACGAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCTCGTTGTTGTTCCTTACAACTTCTCGACCAGTCCGAGCTCGACATCTGTGAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATACGAGTAAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACAACCAACAAAACTTTTTTACTTATTTACATAGATCTGTTACCGGAGTACATATTTATATTCTATTAA

Protein sequence

MPKQSGRRRYRSSLSSSSSSPFFRSLFMASLKEHYVSTSLTSTKSRACFFLFLLLLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQQFEAAMHEVPSGPNPTTNKTFLLIYIDLLPEYIFIFY
Homology
[Close]
BLAST of CmaCh08G010300 vs. TrEMBL
Match: A0A0A0LNB8_CUCSA (CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 44  KSRACFFLFLL-LLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQ 103
           KS+ACFFLFLL LLL+VVP+  ST P+     TPSRPPS+ +AM                
Sbjct: 10  KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 104 QFEAAMHEVPSGPNPTTNK 122
            FEAAMHEVPSGPNPT+NK
Sbjct: 70  -FEAAMHEVPSGPNPTSNK 66

[Close]
BLAST of CmaCh08G010300 vs. NCBI nr
Match: gi|700206342|gb|KGN61461.1| (CLAVATA3/ESR-related protein [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 44  KSRACFFLFLL-LLLVVVPYNFSTSPSSTSVSTPSRPPSSSLAMEEQAFSSPYTSKRTLQ 103
           KS+ACFFLFLL LLL+VVP+  ST P+     TPSRPPS+ +AM                
Sbjct: 10  KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 104 QFEAAMHEVPSGPNPTTNK 122
            FEAAMHEVPSGPNPT+NK
Sbjct: 70  -FEAAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:
BLAST of CmaCh08G010300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G010300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNB8_CUCSA1.4e-0956.96CLAVATA3/ESR-related protein OS=Cucumis sativus GN=Csa_2G131680 PE=4 SV=1[more]
BLAST of CmaCh08G010300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206342|gb|KGN61461.1|2.0e-0956.96CLAVATA3/ESR-related protein [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G010300.1CmaCh08G010300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G010300Cucurbita maxima (Rimu)cmacmaB296
CmaCh08G010300Cucurbita maxima (Rimu)cmacmaB373
CmaCh08G010300Cucurbita maxima (Rimu)cmacmaB511
CmaCh08G010300Cucurbita maxima (Rimu)cmacmaB554
CmaCh08G010300Cucumber (Gy14) v1cgycmaB0732
CmaCh08G010300Cucurbita moschata (Rifu)cmacmoB883
CmaCh08G010300Cucurbita moschata (Rifu)cmacmoB887
CmaCh08G010300Cucurbita moschata (Rifu)cmacmoB909
CmaCh08G010300Cucurbita moschata (Rifu)cmacmoB910
CmaCh08G010300Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G010300Wild cucumber (PI 183967)cmacpiB902
CmaCh08G010300Wild cucumber (PI 183967)cmacpiB903
CmaCh08G010300Wild cucumber (PI 183967)cmacpiB911
CmaCh08G010300Cucumber (Chinese Long) v2cmacuB884
CmaCh08G010300Cucumber (Chinese Long) v2cmacuB885
CmaCh08G010300Melon (DHL92) v3.5.1cmameB845
CmaCh08G010300Melon (DHL92) v3.5.1cmameB850
CmaCh08G010300Watermelon (Charleston Gray)cmawcgB795
CmaCh08G010300Watermelon (Charleston Gray)cmawcgB804
CmaCh08G010300Watermelon (Charleston Gray)cmawcgB811
CmaCh08G010300Watermelon (97103) v1cmawmB869
CmaCh08G010300Watermelon (97103) v1cmawmB878
CmaCh08G010300Cucurbita pepo (Zucchini)cmacpeB895
CmaCh08G010300Cucurbita pepo (Zucchini)cmacpeB916
CmaCh08G010300Cucurbita pepo (Zucchini)cmacpeB928
CmaCh08G010300Cucurbita pepo (Zucchini)cmacpeB930
CmaCh08G010300Cucurbita pepo (Zucchini)cmacpeB931
CmaCh08G010300Bottle gourd (USVL1VR-Ls)cmalsiB811
CmaCh08G010300Bottle gourd (USVL1VR-Ls)cmalsiB839
CmaCh08G010300Cucumber (Gy14) v2cgybcmaB272
CmaCh08G010300Cucumber (Gy14) v2cgybcmaB454
CmaCh08G010300Melon (DHL92) v3.6.1cmamedB946
CmaCh08G010300Melon (DHL92) v3.6.1cmamedB950
CmaCh08G010300Silver-seed gourdcarcmaB0321
CmaCh08G010300Silver-seed gourdcarcmaB1089
CmaCh08G010300Silver-seed gourdcarcmaB1327
CmaCh08G010300Silver-seed gourdcarcmaB1495
CmaCh08G010300Cucumber (Chinese Long) v3cmacucB1047
CmaCh08G010300Cucumber (Chinese Long) v3cmacucB1049
CmaCh08G010300Cucumber (Chinese Long) v3cmacucB1058
CmaCh08G010300Watermelon (97103) v2cmawmbB914
CmaCh08G010300Watermelon (97103) v2cmawmbB921
CmaCh08G010300Watermelon (97103) v2cmawmbB927
CmaCh08G010300Wax gourdcmawgoB1090