CmaCh08G004600.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGGTGTTCAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGGTATCTCGCATATTTTTTAAACTCTCTGTTTATTGCTTGTTTGTTTGCTATGACTATGAGTTAAGCAGTCGGAGAACTGGTTTAGAACGTTATTTTGTTGTTTTTGTATCTCTTTTTAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA MFGGQIDVFVDRFKFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVYVNRTSFLSQFEN
BLAST of CmaCh08G004600.1 vs. TrEMBL
Match: A0A0A0K827_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407570 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 6.6e-11 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. TrEMBL
Match: B9RNG3_RICCO (DNA replication regulator dpb11, putative OS=Ricinus communis GN=RCOM_1347450 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.4e-07 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. TrEMBL
Match: A0A151SNG3_CAJCA (BRCT domain-containing protein At4g02110 family OS=Cajanus cajan GN=KK1_002563 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 9.8e-07 Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. TrEMBL
Match: A5C449_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036193 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06 Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. TrEMBL
Match: K4C3Z8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 3.7e-06 Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. TAIR10
Match: AT4G02110.1 (AT4G02110.1 transcription coactivators) HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06 Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. NCBI nr
Match: gi|659101222|ref|XP_008451492.1| (PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis melo]) HSP 1 Score: 75.1 bits (183), Expect = 5.5e-11 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. NCBI nr
Match: gi|700189771|gb|KGN45004.1| (hypothetical protein Csa_7G407570 [Cucumis sativus]) HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. NCBI nr
Match: gi|449436751|ref|XP_004136156.1| (PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis sativus]) HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11 Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. NCBI nr
Match: gi|223545782|gb|EEF47286.1| (DNA replication regulator dpb11, putative [Ricinus communis]) HSP 1 Score: 62.0 bits (149), Expect = 4.8e-07 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
BLAST of CmaCh08G004600.1 vs. NCBI nr
Match: gi|1000975223|ref|XP_015572447.1| (PREDICTED: BRCT domain-containing protein At4g02110 [Ricinus communis]) HSP 1 Score: 62.0 bits (149), Expect = 4.8e-07 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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