CmaCh08G004600 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G004600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BRCT domain-containing family protein
Location	Cma_Chr08 : 2590008 .. 2590350 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGGTGTTCAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGGTATCTCGCATATTTTTTAAACTCTCTGTTTATTGCTTGTTTGTTTGCTATGACTATGAGTTAAGCAGTCGGAGAACTGGTTTAGAACGTTATTTTGTTGTTTTTGTATCTCTTTTTAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA

mRNA sequence

ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA

Coding sequence (CDS)

ATGTTCGGAGGGCAGATTGATGTTTTTGTTGATCGTTTTAAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATACTGGTCAGTATGGCCCGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTCTCAGTCAATTTGAAAATTAA

Protein sequence

MFGGQIDVFVDRFKFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVYVNRTSFLSQFEN

Homology

[Close]

BLAST of CmaCh08G004600 vs. TrEMBL
Match: A0A0A0K827_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407570 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 15 FVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          FVLFGFN  DEKQ+++ LI GGGVD GQYGP+C+HVIV+K+KIVY
Sbjct: 15 FVLFGFNIVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVY 59

[Close]

BLAST of CmaCh08G004600 vs. TrEMBL
Match: B9RNG3_RICCO (DNA replication regulator dpb11, putative OS=Ricinus communis GN=RCOM_1347450 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 14 KFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          +FVLFGF+  + +Q++A LI GGGVD GQY  NCTHVIV  DKIVY
Sbjct: 14 RFVLFGFDPINLRQVRAKLIDGGGVDAGQYNENCTHVIV--DKIVY 57

[Close]

BLAST of CmaCh08G004600 vs. TrEMBL
Match: A0A151SNG3_CAJCA (BRCT domain-containing protein At4g02110 family OS=Cajanus cajan GN=KK1_002563 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-07
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1  MFGGQIDVFVDRFKFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          MFGG         +FVL GFN   E+QI++ L+ GGGVD GQYG +CTHVIV  DKI Y
Sbjct: 9  MFGG--------VRFVLRGFNPVAERQIRSKLVSGGGVDVGQYGGSCTHVIV--DKIAY 57

[Close]

BLAST of CmaCh08G004600 vs. TrEMBL
Match: A5C449_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036193 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 15 FVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          FVLFGF+   E+++++ L+ GGGVD G+YG NCTHV+V  DK+VY
Sbjct: 16 FVLFGFDPVHEREVRSKLVNGGGVDVGRYGQNCTHVVV--DKLVY 58

[Close]

BLAST of CmaCh08G004600 vs. TrEMBL
Match: K4C3Z8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-06
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 14 KFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          +FVL GF+   ++QIQ+ L+ GGGVD G+YGP+CTH+IV  D I+Y
Sbjct: 14 RFVLIGFDPHRKEQIQSKLVEGGGVDAGKYGPDCTHLIV--DSIIY 57

[Close]

BLAST of CmaCh08G004600 vs. TAIR10
Match: AT4G02110.1 (AT4G02110.1 transcription coactivators)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 14 KFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          KF L GFN      +++ L+ GGGVD GQ+  +CTH+IV  DK++Y
Sbjct: 16 KFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIV--DKLLY 59

[Close]

BLAST of CmaCh08G004600 vs. NCBI nr
Match: gi|659101222|ref|XP_008451492.1| (PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 15 FVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          FVLFGFN  DEKQ+++ LI GGGVD GQYGP+C+HVIV+K+KIVY
Sbjct: 15 FVLFGFNSVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVY 59

[Close]

BLAST of CmaCh08G004600 vs. NCBI nr
Match: gi|700189771|gb|KGN45004.1| (hypothetical protein Csa_7G407570 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 15 FVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          FVLFGFN  DEKQ+++ LI GGGVD GQYGP+C+HVIV+K+KIVY
Sbjct: 15 FVLFGFNIVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVY 59

[Close]

BLAST of CmaCh08G004600 vs. NCBI nr
Match: gi|449436751|ref|XP_004136156.1| (PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 15 FVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          FVLFGFN  DEKQ+++ LI GGGVD GQYGP+C+HVIV+K+KIVY
Sbjct: 15 FVLFGFNIVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVY 59

[Close]

BLAST of CmaCh08G004600 vs. NCBI nr
Match: gi|223545782|gb|EEF47286.1| (DNA replication regulator dpb11, putative [Ricinus communis])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 14 KFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          +FVLFGF+  + +Q++A LI GGGVD GQY  NCTHVIV  DKIVY
Sbjct: 14 RFVLFGFDPINLRQVRAKLIDGGGVDAGQYNENCTHVIV--DKIVY 57

[Close]

BLAST of CmaCh08G004600 vs. NCBI nr
Match: gi|1000975223|ref|XP_015572447.1| (PREDICTED: BRCT domain-containing protein At4g02110 [Ricinus communis])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 14 KFVLFGFNHFDEKQIQATLIYGGGVDTGQYGPNCTHVIVNKDKIVY 60
          +FVLFGF+  + +Q++A LI GGGVD GQY  NCTHVIV  DKIVY
Sbjct: 14 RFVLFGFDPINLRQVRAKLIDGGGVDAGQYNENCTHVIV--DKIVY 57

The following BLAST results are available for this feature:

BLAST of CmaCh08G004600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G004600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K827_CUCSA	6.6e-11	73.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407570 PE=4 SV=1	[more]
B9RNG3_RICCO	3.4e-07	65.22	DNA replication regulator dpb11, putative OS=Ricinus communis GN=RCOM_1347450 PE...	[more]
A0A151SNG3_CAJCA	9.8e-07	55.93	BRCT domain-containing protein At4g02110 family OS=Cajanus cajan GN=KK1_002563 P...	[more]
A5C449_VITVI	1.3e-06	57.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036193 PE=4 SV=1	[more]
K4C3Z8_SOLLC	3.7e-06	56.52	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmaCh08G004600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02110.1	1.5e-06	47.83	transcription coactivators	[more]

BLAST of CmaCh08G004600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101222\|ref\|XP_008451492.1\|	5.5e-11	73.33	PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis melo]	[more]
gi\|700189771\|gb\|KGN45004.1\|	9.4e-11	73.33	hypothetical protein Csa_7G407570 [Cucumis sativus]	[more]
gi\|449436751\|ref\|XP_004136156.1\|	9.4e-11	73.33	PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Cucumis sativus]	[more]
gi\|223545782\|gb\|EEF47286.1\|	4.8e-07	65.22	DNA replication regulator dpb11, putative [Ricinus communis]	[more]
gi\|1000975223\|ref\|XP_015572447.1\|	4.8e-07	65.22	PREDICTED: BRCT domain-containing protein At4g02110 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001357	BRCT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G004600.1	CmaCh08G004600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	GENE3D	G3DSA:3.40.50.10190		coord: 12..62 score: 1.
IPR001357	BRCT domain	unknown	SSF52113	BRCT domain	coord: 11..55 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G004600	Cucsa.205120	Cucumber (Gy14) v1	cgycmaB0608
CmaCh08G004600	Cla015129	Watermelon (97103) v1	cmawmB856
CmaCh08G004600	Csa7G407570	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G004600	CSPI07G18050	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G004600	CmoCh17G010150	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G004600	CmoCh08G004500	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G004600	Lsi02G024650	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G004600	Cp4.1LG12g06050	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G004600	CsaV3_7G029870	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G004600	Cla97C09G167670	Watermelon (97103) v2	cmawmbB940
CmaCh08G004600	Bhi09G000689	Wax gourd	cmawgoB1128
CmaCh08G004600	CsGy7G016510	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G004600	Carg07131	Silver-seed gourd	carcmaB0148

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G004600	CmaCh17G010400	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G004600	Cucumber (Gy14) v2	cgybcmaB577
CmaCh08G004600	Melon (DHL92) v3.6.1	cmamedB930
CmaCh08G004600	Melon (DHL92) v3.6.1	cmamedB956
CmaCh08G004600	Silver-seed gourd	carcmaB0628
CmaCh08G004600	Silver-seed gourd	carcmaB1060
CmaCh08G004600	Silver-seed gourd	carcmaB1136
CmaCh08G004600	Cucumber (Chinese Long) v3	cmacucB1062
CmaCh08G004600	Watermelon (97103) v2	cmawmbB910
CmaCh08G004600	Wax gourd	cmawgoB1087
CmaCh08G004600	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh08G004600	Cucurbita maxima (Rimu)	cmacmaB440
CmaCh08G004600	Cucumber (Gy14) v1	cgycmaB0206
CmaCh08G004600	Cucurbita moschata (Rifu)	cmacmoB879
CmaCh08G004600	Cucurbita moschata (Rifu)	cmacmoB905
CmaCh08G004600	Wild cucumber (PI 183967)	cmacpiB913
CmaCh08G004600	Cucumber (Chinese Long) v2	cmacuB894
CmaCh08G004600	Melon (DHL92) v3.5.1	cmameB831
CmaCh08G004600	Melon (DHL92) v3.5.1	cmameB854
CmaCh08G004600	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G004600	Watermelon (Charleston Gray)	cmawcgB792
CmaCh08G004600	Watermelon (97103) v1	cmawmB862
CmaCh08G004600	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G004600	Cucurbita pepo (Zucchini)	cmacpeB924
CmaCh08G004600	Bottle gourd (USVL1VR-Ls)	cmalsiB831