CmaCh07G005660.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G005660.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr07 : 2446517 .. 2446838 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGGTAAGGGAGGCTTCGGCAGTGGTTGAATCGTCGGAAGGGGAGGCAATGCCGGTGTGGATGGTAGCGGTGGTAATGTGGCCTTGGGCAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

mRNA sequence

ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

Coding sequence (CDS)

ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

Protein sequence

MASLDGGSDEKGKAGGNGTVVGVVGTEGIVGNGGIGGKVAFDIVGAEGNGVAARILEGMAAEELEVELLVYREGDDE

Homology

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BLAST of CmaCh07G005660.1 vs. NCBI nr
Match: gi|659081034|ref|XP_008441114.1| (PREDICTED: rRNA 2'-O-methyltransferase fibrillarin-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 1  MASLDGGSDEKGKAGGNGTVVGVVGTEGIVGNGGIGGKVAFDIVGAEGNG 51
          M   DGG DEKGK G NG V GVVGT+GIVGNGG GGKVAF   GAEGNG
Sbjct: 1  MVHFDGGGDEKGKVG-NGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNG 49

The following BLAST results are available for this feature:

BLAST of CmaCh07G005660.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005660.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005660.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G005660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081034\|ref\|XP_008441114.1\|	3.1e-07	74.00	PREDICTED: rRNA 2'-O-methyltransferase fibrillarin-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh07G005660	CmaCh07G005660	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh07G005660.1	CmaCh07G005660.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G005660.1.exon.1	CmaCh07G005660.1.exon.1	exon
CmaCh07G005660.1.exon.2	CmaCh07G005660.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G005660.1.CDS.1	CmaCh07G005660.1.CDS.1	CDS
CmaCh07G005660.1.CDS.2	CmaCh07G005660.1.CDS.2	CDS