CmaCh07G005660 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G005660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr07 : 2446517 .. 2446838 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGGTAAGGGAGGCTTCGGCAGTGGTTGAATCGTCGGAAGGGGAGGCAATGCCGGTGTGGATGGTAGCGGTGGTAATGTGGCCTTGGGCAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

mRNA sequence

ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

Coding sequence (CDS)

ATGGCCTCTTTGGATGGGGGCAGTGATGAGAAAGGAAAGGCCGGCGGCAATGGCACGGTTGTTGGTGTGGTAGGAACTGAGGGAATTGTTGGTAATGGTGGCATAGGGGGCAAGGTAGCCTTTGACATTGTTGGTGCTGAAGGAAATGGAGTGGCAGCAAGGATTTTGGAGGGAATGGCAGCGGAGGAACTGGAGGTGGAGCTGCTGGTGTATCGAGAAGGCGACGACGAGTAG

Protein sequence

MASLDGGSDEKGKAGGNGTVVGVVGTEGIVGNGGIGGKVAFDIVGAEGNGVAARILEGMAAEELEVELLVYREGDDE
Homology
[Close]
BLAST of CmaCh07G005660 vs. NCBI nr
Match: gi|659081034|ref|XP_008441114.1| (PREDICTED: rRNA 2'-O-methyltransferase fibrillarin-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 1 

Query: 1  MASLDGGSDEKGKAGGNGTVVGVVGTEGIVGNGGIGGKVAFDIVGAEGNG 51
          M   DGG DEKGK G NG V GVVGT+GIVGNGG GGKVAF   GAEGNG
Sbjct: 1  MVHFDGGGDEKGKVG-NGMVGGVVGTKGIVGNGGKGGKVAFGKAGAEGNG 49

The following BLAST results are available for this feature:
BLAST of CmaCh07G005660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005660 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081034|ref|XP_008441114.1|3.1e-0774.00PREDICTED: rRNA 2'-O-methyltransferase fibrillarin-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005660.1CmaCh07G005660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G005660Wax gourdcmawgoB1072
CmaCh07G005660Cucurbita maxima (Rimu)cmacmaB207
CmaCh07G005660Cucurbita maxima (Rimu)cmacmaB523
CmaCh07G005660Cucurbita maxima (Rimu)cmacmaB546
CmaCh07G005660Cucurbita maxima (Rimu)cmacmaB552
CmaCh07G005660Cucumber (Gy14) v1cgycmaB0235
CmaCh07G005660Cucumber (Gy14) v1cgycmaB0463
CmaCh07G005660Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G005660Cucurbita moschata (Rifu)cmacmoB844
CmaCh07G005660Cucurbita moschata (Rifu)cmacmoB846
CmaCh07G005660Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G005660Cucurbita moschata (Rifu)cmacmoB870
CmaCh07G005660Wild cucumber (PI 183967)cmacpiB867
CmaCh07G005660Wild cucumber (PI 183967)cmacpiB893
CmaCh07G005660Cucumber (Chinese Long) v2cmacuB850
CmaCh07G005660Cucumber (Chinese Long) v2cmacuB877
CmaCh07G005660Melon (DHL92) v3.5.1cmameB787
CmaCh07G005660Melon (DHL92) v3.5.1cmameB809
CmaCh07G005660Watermelon (Charleston Gray)cmawcgB754
CmaCh07G005660Watermelon (Charleston Gray)cmawcgB775
CmaCh07G005660Watermelon (97103) v1cmawmB826
CmaCh07G005660Watermelon (97103) v1cmawmB815
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB870
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB876
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB889
CmaCh07G005660Cucurbita pepo (Zucchini)cmacpeB891
CmaCh07G005660Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G005660Bottle gourd (USVL1VR-Ls)cmalsiB807
CmaCh07G005660Cucumber (Gy14) v2cgybcmaB265
CmaCh07G005660Cucumber (Gy14) v2cgybcmaB861
CmaCh07G005660Melon (DHL92) v3.6.1cmamedB887
CmaCh07G005660Melon (DHL92) v3.6.1cmamedB890
CmaCh07G005660Melon (DHL92) v3.6.1cmamedB907
CmaCh07G005660Silver-seed gourdcarcmaB0084
CmaCh07G005660Silver-seed gourdcarcmaB0571
CmaCh07G005660Silver-seed gourdcarcmaB1056
CmaCh07G005660Silver-seed gourdcarcmaB1289
CmaCh07G005660Cucumber (Chinese Long) v3cmacucB1008
CmaCh07G005660Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G005660Watermelon (97103) v2cmawmbB875
CmaCh07G005660Watermelon (97103) v2cmawmbB905
CmaCh07G005660Watermelon (97103) v2cmawmbB908