CmaCh06G010000.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010000.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein ARABIDILLO 1
Location	Cma_Chr06 : 6770464 .. 6771426 (-)
Sequence length	312

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGGTTAATTTGTTGATAGCAGTTCAAAGTAAATTAGGGGAGAGAGGTGTTCATATGCTTTGAGGGTTTGAGCTTCAAAACATCACCTGAATTCTCTCCCTTTCTTCCTCCTTCGTTTTGCAATATTTTCTGCTCAATTCCGACTTTCTTCAATCAACCATATTGAATGTGTCGTGATTCATTGTAAAAGTTGAAGATTTCAGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATGTAATCAATCTATAACGCGGATTAATTTTGTTCTTTGTTGTTTTTGACGAACTTGGGGTTTTTTTTTGGTTCACATTAAGAGTTTTCAATCAATTGTGGGGGTAATCATAACTTGGTTCTTCGGAGGGCCAGGGTTTTGAAGTAATAGCATAGGGTTCGCGTTGGCTAGCGCGTTAAAGAATTGGGGATTTGGGTTTAAAGAGTATGGTTTCGTGTTTGCCTGTGTTTCCATTGTGTTGTCAGGTCAGGGGTGGATTTGGGTTTAAAGAGTATGGTTTCGTGTTTGCCTGTGTTTCCATTGTGTTGTCAGGTCAGGGGTAGCGGTATCTGAGTTTCTGGGATTGGGTAGAACATGAATCGTAGGGTGCGTAGGAAGGTGAGTAGAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGTAGAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

mRNA sequence

ATGCTTGTGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

Coding sequence (CDS)

ATGCTTGTGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

Protein sequence

MLVGLPAHPDSKNSIRFKGRRFSFIKGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRVLGLSSCLWTSFDLRVDV

Homology

[Close]

BLAST of CmaCh06G010000.1 vs. Swiss-Prot
Match: ADLO1_ARATH (Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 20  RRFSFIKGKEKLI-LPSYLEIECE-----IADLDLKQTVDWTCLPDDTVIQLFSCLNYRD 79
           R+    KGK+K++ LPSY E         +A   L   VDW  LP DTV+QLF+CLNYRD
Sbjct: 7   RKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRD 66

Query: 80  RANLSSTCRTWRVLGLSSCLWTSFDLR 101
           RA+L+STC+TWR LG SSCLWTS DLR
Sbjct: 67  RASLASTCKTWRCLGASSCLWTSLDLR 93

[Close]

BLAST of CmaCh06G010000.1 vs. Swiss-Prot
Match: ADLO2_ARATH (Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 27  GKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRV 86
           GK K+  PSY  I  E     ++Q V+WT LP DTV  LF+ LNYRDRA+L+STCRTWR 
Sbjct: 13  GKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRS 72

Query: 87  LGLSSCLWTSFDLR 101
           LG SS LW+S DLR
Sbjct: 73  LGASSFLWSSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TrEMBL
Match: A0A0A0L302_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118100 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.8e-32
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EI+ EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRAN SSTCRTWR
Sbjct: 12  KGKEKLILPSYPEIDSEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANFSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 72  LLGLSSCLWTSFDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TrEMBL
Match: W9QSQ1_9ROSA (Protein ARABIDILLO 1 OS=Morus notabilis GN=L484_021830 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ILPSY EIE E++ LD     DWT LPDDTVIQLFSCLNYRDRA+LSSTC+TW+
Sbjct: 12  KGKEKVILPSYREIEDEVSGLDRSGFADWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWK 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TrEMBL
Match: M5VUY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LP Y EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPCYPEIEEEVSGSVQNWIVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TrEMBL
Match: M5W7G2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LP Y EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPCYPEIEEEVSGSVQNWIVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TrEMBL
Match: B9RD12_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1608630 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ L S+ EIE E++  D  + VDWT LPDDTVIQLFSCLNYRDRA+LSSTCRTWR
Sbjct: 12  KGKEKVALSSFPEIEDEVSCSDSNEAVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
            LG+S CLWTS DLR
Sbjct: 72  ALGISPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. TAIR10
Match: AT2G44900.1 (AT2G44900.1 ARABIDILLO-1)

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-21
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 20  RRFSFIKGKEKLI-LPSYLEIECE-----IADLDLKQTVDWTCLPDDTVIQLFSCLNYRD 79
           R+    KGK+K++ LPSY E         +A   L   VDW  LP DTV+QLF+CLNYRD
Sbjct: 7   RKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRD 66

Query: 80  RANLSSTCRTWRVLGLSSCLWTSFDLR 101
           RA+L+STC+TWR LG SSCLWTS DLR
Sbjct: 67  RASLASTCKTWRCLGASSCLWTSLDLR 93

[Close]

BLAST of CmaCh06G010000.1 vs. TAIR10
Match: AT3G60350.1 (AT3G60350.1 ARABIDILLO-2)

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-18
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 27  GKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRV 86
           GK K+  PSY  I  E     ++Q V+WT LP DTV  LF+ LNYRDRA+L+STCRTWR 
Sbjct: 13  GKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRS 72

Query: 87  LGLSSCLWTSFDLR 101
           LG SS LW+S DLR
Sbjct: 73  LGASSFLWSSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. NCBI nr
Match: gi|659074835|ref|XP_008437822.1| (PREDICTED: protein ARABIDILLO 1-like [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-32
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EIE EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRANLSSTCRTWR
Sbjct: 42  KGKEKLILPSYPEIESEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANLSSTCRTWR 101

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 102 LLGLSSCLWTSFDLR 116

[Close]

BLAST of CmaCh06G010000.1 vs. NCBI nr
Match: gi|449431988|ref|XP_004133782.1| (PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EI+ EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRAN SSTCRTWR
Sbjct: 12  KGKEKLILPSYPEIDSEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANFSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 72  LLGLSSCLWTSFDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. NCBI nr
Match: gi|703072494|ref|XP_010089299.1| (Protein ARABIDILLO 1 [Morus notabilis])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ILPSY EIE E++ LD     DWT LPDDTVIQLFSCLNYRDRA+LSSTC+TW+
Sbjct: 12  KGKEKVILPSYREIEDEVSGLDRSGFADWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWK 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. NCBI nr
Match: gi|1009143855|ref|XP_015889482.1| (PREDICTED: protein ARABIDILLO 1 [Ziziphus jujuba])

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGK K++ PSY EIE E++ L+    VDWT LPDDTVIQLFSCLNYRDRA+LSSTCRTWR
Sbjct: 12  KGKGKVVFPSYPEIEDEVSSLEQNGVVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

[Close]

BLAST of CmaCh06G010000.1 vs. NCBI nr
Match: gi|694441950|ref|XP_009347693.1| (PREDICTED: protein ARABIDILLO 1-like [Pyrus x bretschneideri])

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-24
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LPSY EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPSYPEIEDEVSCPMQNGIVDWTGLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

The following BLAST results are available for this feature:

BLAST of CmaCh06G010000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADLO1_ARATH	1.6e-19	57.47	Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1	[more]
ADLO2_ARATH	1.7e-16	59.46	Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1	[more]

BLAST of CmaCh06G010000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L302_CUCSA	9.8e-32	90.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118100 PE=4 SV=1	[more]
W9QSQ1_9ROSA	1.0e-25	76.00	Protein ARABIDILLO 1 OS=Morus notabilis GN=L484_021830 PE=4 SV=1	[more]
M5VUY2_PRUPE	4.4e-24	73.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1	[more]
M5W7G2_PRUPE	4.4e-24	73.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1	[more]
B9RD12_RICCO	5.8e-24	73.33	Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1608630 PE=4 SV=1	[more]

BLAST of CmaCh06G010000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44900.1	9.1e-21	57.47	ARABIDILLO-1	[more]
AT3G60350.1	9.4e-18	59.46	ARABIDILLO-2	[more]

BLAST of CmaCh06G010000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074835\|ref\|XP_008437822.1\|	2.2e-32	93.33	PREDICTED: protein ARABIDILLO 1-like [Cucumis melo]	[more]
gi\|449431988\|ref\|XP_004133782.1\|	1.4e-31	90.67	PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus]	[more]
gi\|703072494\|ref\|XP_010089299.1\|	1.5e-25	76.00	Protein ARABIDILLO 1 [Morus notabilis]	[more]
gi\|1009143855\|ref\|XP_015889482.1\|	7.5e-25	74.67	PREDICTED: protein ARABIDILLO 1 [Ziziphus jujuba]	[more]
gi\|694441950\|ref\|XP_009347693.1\|	4.8e-24	74.67	PREDICTED: protein ARABIDILLO 1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G010000	CmaCh06G010000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010000.1	CmaCh06G010000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010000.1.CDS.3	CmaCh06G010000.1.CDS.3	CDS
CmaCh06G010000.1.CDS.2	CmaCh06G010000.1.CDS.2	CDS
CmaCh06G010000.1.CDS.1	CmaCh06G010000.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010000.1.exon.3	CmaCh06G010000.1.exon.3	exon
CmaCh06G010000.1.exon.2	CmaCh06G010000.1.exon.2	exon
CmaCh06G010000.1.exon.1	CmaCh06G010000.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 55..99 score: 1.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 57..97 score: 2.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 51..97 score: 8
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 50..100 score: 2.09
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 50..97 score: 8.6