CmaCh06G010000 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G010000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein ARABIDILLO 1
LocationCma_Chr06 : 6770464 .. 6771426 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTGGTTAATTTGTTGATAGCAGTTCAAAGTAAATTAGGGGAGAGAGGTGTTCATATGCTTTGAGGGTTTGAGCTTCAAAACATCACCTGAATTCTCTCCCTTTCTTCCTCCTTCGTTTTGCAATATTTTCTGCTCAATTCCGACTTTCTTCAATCAACCATATTGAATGTGTCGTGATTCATTGTAAAAGTTGAAGATTTCAGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATGTAATCAATCTATAACGCGGATTAATTTTGTTCTTTGTTGTTTTTGACGAACTTGGGGTTTTTTTTTGGTTCACATTAAGAGTTTTCAATCAATTGTGGGGGTAATCATAACTTGGTTCTTCGGAGGGCCAGGGTTTTGAAGTAATAGCATAGGGTTCGCGTTGGCTAGCGCGTTAAAGAATTGGGGATTTGGGTTTAAAGAGTATGGTTTCGTGTTTGCCTGTGTTTCCATTGTGTTGTCAGGTCAGGGGTGGATTTGGGTTTAAAGAGTATGGTTTCGTGTTTGCCTGTGTTTCCATTGTGTTGTCAGGTCAGGGGTAGCGGTATCTGAGTTTCTGGGATTGGGTAGAACATGAATCGTAGGGTGCGTAGGAAGGTGAGTAGAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGTAGAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

mRNA sequence

ATGCTTGTGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

Coding sequence (CDS)

ATGCTTGTGGGTTTACCGGCGCACCCAGATAGCAAAAACTCTATCAGGTTTAAGGGCCGGCGATTTTCGTTCATAAAAGGGAAGGAGAAGCTGATTTTGCCAAGCTACCTTGAAATTGAATGTGAGATAGCTGATTTGGATTTGAAACAGACAGTGGATTGGACTTGTTTGCCTGATGATACAGTCATTCAGCTGTTCTCTTGTTTGAATTATCGTGACCGGGCGAATTTGTCATCGACGTGTAGAACATGGAGAGTTCTTGGTTTATCTTCGTGCTTGTGGACTTCGTTTGATCTTCGAGTCGACGTGTAG

Protein sequence

MLVGLPAHPDSKNSIRFKGRRFSFIKGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRVLGLSSCLWTSFDLRVDV
BLAST of CmaCh06G010000 vs. Swiss-Prot
Match: ADLO1_ARATH (Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1

Query: 20  RRFSFIKGKEKLI-LPSYLEIECE-----IADLDLKQTVDWTCLPDDTVIQLFSCLNYRD 79
           R+    KGK+K++ LPSY E         +A   L   VDW  LP DTV+QLF+CLNYRD
Sbjct: 7   RKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRD 66

Query: 80  RANLSSTCRTWRVLGLSSCLWTSFDLR 101
           RA+L+STC+TWR LG SSCLWTS DLR
Sbjct: 67  RASLASTCKTWRCLGASSCLWTSLDLR 93

BLAST of CmaCh06G010000 vs. Swiss-Prot
Match: ADLO2_ARATH (Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1

Query: 27  GKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRV 86
           GK K+  PSY  I  E     ++Q V+WT LP DTV  LF+ LNYRDRA+L+STCRTWR 
Sbjct: 13  GKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRS 72

Query: 87  LGLSSCLWTSFDLR 101
           LG SS LW+S DLR
Sbjct: 73  LGASSFLWSSLDLR 86

BLAST of CmaCh06G010000 vs. TrEMBL
Match: A0A0A0L302_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118100 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.8e-32
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EI+ EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRAN SSTCRTWR
Sbjct: 12  KGKEKLILPSYPEIDSEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANFSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 72  LLGLSSCLWTSFDLR 86

BLAST of CmaCh06G010000 vs. TrEMBL
Match: W9QSQ1_9ROSA (Protein ARABIDILLO 1 OS=Morus notabilis GN=L484_021830 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ILPSY EIE E++ LD     DWT LPDDTVIQLFSCLNYRDRA+LSSTC+TW+
Sbjct: 12  KGKEKVILPSYREIEDEVSGLDRSGFADWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWK 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. TrEMBL
Match: M5VUY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LP Y EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPCYPEIEEEVSGSVQNWIVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. TrEMBL
Match: M5W7G2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LP Y EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPCYPEIEEEVSGSVQNWIVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. TrEMBL
Match: B9RD12_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1608630 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ L S+ EIE E++  D  + VDWT LPDDTVIQLFSCLNYRDRA+LSSTCRTWR
Sbjct: 12  KGKEKVALSSFPEIEDEVSCSDSNEAVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
            LG+S CLWTS DLR
Sbjct: 72  ALGISPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. TAIR10
Match: AT2G44900.1 (AT2G44900.1 ARABIDILLO-1)

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-21
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1

Query: 20  RRFSFIKGKEKLI-LPSYLEIECE-----IADLDLKQTVDWTCLPDDTVIQLFSCLNYRD 79
           R+    KGK+K++ LPSY E         +A   L   VDW  LP DTV+QLF+CLNYRD
Sbjct: 7   RKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRD 66

Query: 80  RANLSSTCRTWRVLGLSSCLWTSFDLR 101
           RA+L+STC+TWR LG SSCLWTS DLR
Sbjct: 67  RASLASTCKTWRCLGASSCLWTSLDLR 93

BLAST of CmaCh06G010000 vs. TAIR10
Match: AT3G60350.1 (AT3G60350.1 ARABIDILLO-2)

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-18
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1

Query: 27  GKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWRV 86
           GK K+  PSY  I  E     ++Q V+WT LP DTV  LF+ LNYRDRA+L+STCRTWR 
Sbjct: 13  GKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRS 72

Query: 87  LGLSSCLWTSFDLR 101
           LG SS LW+S DLR
Sbjct: 73  LGASSFLWSSLDLR 86

BLAST of CmaCh06G010000 vs. NCBI nr
Match: gi|659074835|ref|XP_008437822.1| (PREDICTED: protein ARABIDILLO 1-like [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-32
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EIE EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRANLSSTCRTWR
Sbjct: 42  KGKEKLILPSYPEIESEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANLSSTCRTWR 101

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 102 LLGLSSCLWTSFDLR 116

BLAST of CmaCh06G010000 vs. NCBI nr
Match: gi|449431988|ref|XP_004133782.1| (PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEKLILPSY EI+ EIADLD KQTVDWT LPDDTVIQLFSCLNYRDRAN SSTCRTWR
Sbjct: 12  KGKEKLILPSYPEIDSEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANFSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           +LGLSSCLWTSFDLR
Sbjct: 72  LLGLSSCLWTSFDLR 86

BLAST of CmaCh06G010000 vs. NCBI nr
Match: gi|703072494|ref|XP_010089299.1| (Protein ARABIDILLO 1 [Morus notabilis])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK+ILPSY EIE E++ LD     DWT LPDDTVIQLFSCLNYRDRA+LSSTC+TW+
Sbjct: 12  KGKEKVILPSYREIEDEVSGLDRSGFADWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWK 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. NCBI nr
Match: gi|1009143855|ref|XP_015889482.1| (PREDICTED: protein ARABIDILLO 1 [Ziziphus jujuba])

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-25
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGK K++ PSY EIE E++ L+    VDWT LPDDTVIQLFSCLNYRDRA+LSSTCRTWR
Sbjct: 12  KGKGKVVFPSYPEIEDEVSSLEQNGVVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGVSPCLWTSLDLR 86

BLAST of CmaCh06G010000 vs. NCBI nr
Match: gi|694441950|ref|XP_009347693.1| (PREDICTED: protein ARABIDILLO 1-like [Pyrus x bretschneideri])

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-24
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1

Query: 26  KGKEKLILPSYLEIECEIADLDLKQTVDWTCLPDDTVIQLFSCLNYRDRANLSSTCRTWR 85
           KGKEK++LPSY EIE E++       VDWT LPDDTVIQLFSCLNYRDRA+LSSTC+TWR
Sbjct: 12  KGKEKVVLPSYPEIEDEVSCPMQNGIVDWTGLPDDTVIQLFSCLNYRDRASLSSTCKTWR 71

Query: 86  VLGLSSCLWTSFDLR 101
           VLG+S CLWTS DLR
Sbjct: 72  VLGISPCLWTSLDLR 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADLO1_ARATH1.6e-1957.47Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1[more]
ADLO2_ARATH1.7e-1659.46Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L302_CUCSA9.8e-3290.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118100 PE=4 SV=1[more]
W9QSQ1_9ROSA1.0e-2576.00Protein ARABIDILLO 1 OS=Morus notabilis GN=L484_021830 PE=4 SV=1[more]
M5VUY2_PRUPE4.4e-2473.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1[more]
M5W7G2_PRUPE4.4e-2473.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001073mg PE=4 SV=1[more]
B9RD12_RICCO5.8e-2473.33Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1608630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44900.19.1e-2157.47 ARABIDILLO-1[more]
AT3G60350.19.4e-1859.46 ARABIDILLO-2[more]
Match NameE-valueIdentityDescription
gi|659074835|ref|XP_008437822.1|2.2e-3293.33PREDICTED: protein ARABIDILLO 1-like [Cucumis melo][more]
gi|449431988|ref|XP_004133782.1|1.4e-3190.67PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus][more]
gi|703072494|ref|XP_010089299.1|1.5e-2576.00Protein ARABIDILLO 1 [Morus notabilis][more]
gi|1009143855|ref|XP_015889482.1|7.5e-2574.67PREDICTED: protein ARABIDILLO 1 [Ziziphus jujuba][more]
gi|694441950|ref|XP_009347693.1|4.8e-2474.67PREDICTED: protein ARABIDILLO 1-like [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G010000.1CmaCh06G010000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 55..99
score: 1.
IPR001810F-box domainSMARTSM00256fbox_2coord: 57..97
score: 2.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 51..97
score: 8
IPR001810F-box domainunknownSSF81383F-box domaincoord: 50..100
score: 2.09
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 50..97
score: 8.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G010000Lsi05G021800Bottle gourd (USVL1VR-Ls)cmalsiB760
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G010000Cucurbita moschata (Rifu)cmacmoB795
CmaCh06G010000Cucurbita moschata (Rifu)cmacmoB799
CmaCh06G010000Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G010000Cucurbita moschata (Rifu)cmacmoB832
CmaCh06G010000Wild cucumber (PI 183967)cmacpiB830
CmaCh06G010000Wild cucumber (PI 183967)cmacpiB843
CmaCh06G010000Cucumber (Chinese Long) v2cmacuB818
CmaCh06G010000Cucumber (Chinese Long) v2cmacuB830
CmaCh06G010000Melon (DHL92) v3.5.1cmameB766
CmaCh06G010000Melon (DHL92) v3.5.1cmameB771
CmaCh06G010000Watermelon (Charleston Gray)cmawcgB738
CmaCh06G010000Watermelon (Charleston Gray)cmawcgB742
CmaCh06G010000Watermelon (97103) v1cmawmB803
CmaCh06G010000Watermelon (97103) v1cmawmB799
CmaCh06G010000Cucurbita pepo (Zucchini)cmacpeB834
CmaCh06G010000Cucurbita pepo (Zucchini)cmacpeB839
CmaCh06G010000Cucurbita pepo (Zucchini)cmacpeB848
CmaCh06G010000Bottle gourd (USVL1VR-Ls)cmalsiB770
CmaCh06G010000Cucumber (Gy14) v2cgybcmaB430
CmaCh06G010000Cucumber (Gy14) v2cgybcmaB443
CmaCh06G010000Melon (DHL92) v3.6.1cmamedB863
CmaCh06G010000Melon (DHL92) v3.6.1cmamedB873
CmaCh06G010000Silver-seed gourdcarcmaB0164
CmaCh06G010000Silver-seed gourdcarcmaB0176
CmaCh06G010000Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G010000Cucumber (Chinese Long) v3cmacucB0980
CmaCh06G010000Watermelon (97103) v2cmawmbB859
CmaCh06G010000Watermelon (97103) v2cmawmbB862
CmaCh06G010000Wax gourdcmawgoB1011
CmaCh06G010000Wax gourdcmawgoB1021
CmaCh06G010000Cucurbita maxima (Rimu)cmacmaB023
CmaCh06G010000Cucurbita maxima (Rimu)cmacmaB281
CmaCh06G010000Cucumber (Gy14) v1cgycmaB0725
CmaCh06G010000Cucumber (Gy14) v1cgycmaB0728