CmaCh06G002100.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G002100.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 1074881 .. 1078641 (-)
Sequence length705
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAAGACTTTGAGGTTTGTATATCAGTTACTTTGCTGAACGTTTTTTGAGGTTATACATTAAATGAATTGTTCTTTACGTATGGTAATACTATGAAGCTTTTATTAGAAAGTACAAGATCAGCTGCCTATGCTGATAAAAAAAGATAAAAAATCCAATGCCCTGAAAATTTTGTTCTTATCTTAGGTGGAAAGAAAAATGTAGTGTTAAAATAACAGAGTGGATAGATCATAGAAGTTTTTGAGCTACCTATGTTCTGCTCTGCCCTTTGGTTGGCATTAAATCGTGCCTTTAGTCACTATACTCCAAGTGTATCAAACACTTGTTGGGGTGGCTTTTGGAAGTTAATTGGGGTGGGGGATGTTTGTTTTTGCTTAGTGTCGGTACAGTTTTTCCATGGAATGGAGGTTTACTTTTATTCTGTTCATCATTCCAAAAAATGCTTTATCATTTTCTCTTTAGTTCTCATCCTTATCATTGGCAGGCAAGTATTCATATTTGACCATCTTTGGTCTAACTTCCTCATTTTTTCGTAGTTGCAGATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGGTATGGAATTTGATGTCTTCAAAACATTAGTCCTCATAGAATTGAAGAATGGGAACTCTTATTGGGAAAGCTAGCATGGGGAGATATAGGGGTACATTTCAATCAACTTTTGTATCTGAAGTTCAAATAGGATTGTAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGTGATTCCAGATAATAATGACTATGAAAACCCCCTCTATTTTGTTCCACGACTACCCGTTGGTATTGTCAGAATTTAGTGCAACTTATTTCGAGTTTGAATTAGTTATAGAATATATGATATTCGTAATCATTTAATATCTTGAAGAATATATTAGTTAGAAAATATATTTTAGATATTCGTAATTAGTTAAATTTGAATTGTAGTATATTTTATTTTATTCTCAAGATTTAGTTAGCTTATATTTTCTTATTTGTAGGTATTAGTTGGTATCTTATATCTATTTAAAGGGTTATGAATATCAATGAAGAAGAACCTTCGATCTCAATTCTATTTCTTATTCTTAGATCTTTATTCTTTTGTTGAGTAATAATATTTTCATATCTCACTTTTGAGGGGTAGATATTGCGTCAAGTATTCCTTGCCAAATTATCCTACACAATGGTCCAAGTGAGAGGAAGTTGTGGCTTAGAATCACTATTAGATAACATGACAAGTCAGTTTATCTTTTGGATTTCCTTCCCTTGGGAGGTTGTGACGAGGTTAGGGAATTTACACATATTGTTCCATTCTATAGAAACTCCAAAAGCTTCTCATTTTATAGCTAGGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGGTTGGTTTTGCGTAGGGCTCAATTAGAATATCAGTCTGTAATATTTAAAGAACGATGATTCCGTCATGCAGAAATTGTTATGGAGATTCGAAGAAAATCAGCAACATCAAGTGTAAGGCATCCATCTTATATATAGTTCAAATGCTTACTGCTCCTGGAGATACCTTGGACATCCAAAGCTCAGCGTATTAATCATTCTTTTAAAGGTATTTCCTTTTTCCATCTTCAAATATTTTATTCTCGAGAACAACATAAAAGAAACCTACCCACTTGGTTGTTTTTGTTTCTAAAGGCTTTTGCTAACCTTGACACTTGTCATTTATAAATAGCGTTGACATGAGACTGCATAGCCTTGGCAATAACTGATGCAAGAATATGTTCCCAGGTATGTGAATTGGCTATTCCTTGGTAATTTTGGTTGCACTTTATCTATATATACATATTCATACATACACACGCATCATTAAACTTAGATTTTTCTTTGTTTGCTTCCTCAACACAATCTATCGATTTTTTTCAATATAAATTTTATGCACAATTAATTAAGCAGTTGTTGGCTAGAGGCACTGACAGGATAAATCATTAAAAAGATTTTGTGTGCTAATAGGTTCATGATTAAATGAGTACAGCAATATCATTATTAGGCTCAATTCATTTACATGTGGGCTTGCTTAGAACTTTTAGTAAAATGATTGAGTTTGTTTCTATATATGGGCTTTGGAAGAAAAATTGAAGTCATCCTTACCGTTATTATACGGGAGAAAACATTTGTCATTTAAACCTCTTAATTTATAATTGAAGTCATCCTTACCGTTTTCACTTCAAACCTCTTAATTTATAATTGAATAATGAAATACACTTTATTTATCATTTTTACGCTAAGCCTAAGCATCTCTCTCACACAAACCTTTTGTCATTTAATTGGGTAAGCATCATTGCCAACGTTATAAATACACCTATTAATTTTCAGTTTTGTTGATCATTGTCAATGTTATAAATACAATTATTAATTCTCCGTTTTGTTGGGTTTAAAAAATTACAAGATAAATTGTCTAGAGCCTATTTGATAACATTATTTATTTTCAATTTTATGAAATTATTTACCCACTCATTTTTTCATAGAATACTTTGAAACTGAGAAGGTAGGGAAGGCAGAAACTGAGAAGCAGAAAATGAGAAAACATGAAAAGTAGAAGCAAAAACTGAGAATACAGGAAAAGCAGAAGCATAATACAGGAAAAGGGGAAAGCGAACACAGGAAAAGCAGGCCCTGAGAATACAGGAAAAGCAGGAACATAATGAACACAGGAAAAGCAGGCCCTGAGAATACAGGAAAAGCAGGAACATAATATGGGAAAAGCAAAAAGCAGCAGGAACTAAGAAAGCAGGAAAAGCAGAAACTAAGAATACAAATATTGAGAATATAGAGAAAGCAGGAACTAAGAATAGAAAGCAGGAACTAAGAATAGAAAGCAGGAACTAAGAATAGAAAGCAGAAACTAAGAATACAAATATACTAAGAATACAATAGAGAAAGCAGGAACTAAGAATACAAATATTGAGATTATAAGAAAGCAAGAACTAATAATACAAATATTGAGAATATAGAGAAAGGAGGAATTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACTGAAAATACAGAGAAAGCAGGAACTAAGAAAGTAGCAAAGAACTAAGAAAGTAGCAAAGGCAGTAATTAAGAAAAGGCAGTAATTAAGAAAGCAACTGAGAATACAGAGAAAGCAACTGAGAATATAGTGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

mRNA sequence

ATGGTGCAAGACTTTGAGTTCTCATCCTTATCATTGGCAGGCAAATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

Coding sequence (CDS)

ATGGTGCAAGACTTTGAGTTCTCATCCTTATCATTGGCAGGCAAATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

Protein sequence

MVQDFEFSSLSLAGKFCKEALGVFTYQTDRYSGSLTSTMQYLKITKLAAKKLGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAELDLNVGLRMLKLMNAVEVQNVIQHTFVKRRTCISFHDQRRKGKATENIEKAGTKKVEKAVIKKATENTEKAVTEDTDIENTQKAGTKNTNIENTQKAGTKNTNIENTQKAGTKNTNIENTEKAGTKNTDIENIEKAGRNYEYRY
Homology
[Close]
BLAST of CmaCh06G002100.1 vs. TrEMBL
Match: A0A0A0LS72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 603 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 642

[Close]
BLAST of CmaCh06G002100.1 vs. NCBI nr
Match: gi|700209674|gb|KGN64770.1| (hypothetical protein Csa_1G096050 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 603 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 642

[Close]
BLAST of CmaCh06G002100.1 vs. NCBI nr
Match: gi|449459142|ref|XP_004147305.1| (PREDICTED: protein SIEL [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 650 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 689

The following BLAST results are available for this feature:
BLAST of CmaCh06G002100.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G002100.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS72_CUCSA3.2e-0672.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096050 PE=4 SV=1[more]
BLAST of CmaCh06G002100.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G002100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209674|gb|KGN64770.1|4.6e-0672.50hypothetical protein Csa_1G096050 [Cucumis sativus][more]
gi|449459142|ref|XP_004147305.1|4.6e-0672.50PREDICTED: protein SIEL [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh06G002100CmaCh06G002100gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh06G002100.1CmaCh06G002100.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G002100.1.CDS.6CmaCh06G002100.1.CDS.6CDS
CmaCh06G002100.1.CDS.5CmaCh06G002100.1.CDS.5CDS
CmaCh06G002100.1.CDS.4CmaCh06G002100.1.CDS.4CDS
CmaCh06G002100.1.CDS.3CmaCh06G002100.1.CDS.3CDS
CmaCh06G002100.1.CDS.2CmaCh06G002100.1.CDS.2CDS
CmaCh06G002100.1.CDS.1CmaCh06G002100.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh06G002100.1.exon.6CmaCh06G002100.1.exon.6exon
CmaCh06G002100.1.exon.5CmaCh06G002100.1.exon.5exon
CmaCh06G002100.1.exon.4CmaCh06G002100.1.exon.4exon
CmaCh06G002100.1.exon.3CmaCh06G002100.1.exon.3exon
CmaCh06G002100.1.exon.2CmaCh06G002100.1.exon.2exon
CmaCh06G002100.1.exon.1CmaCh06G002100.1.exon.1exon