CmaCh06G002100 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G002100
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 1074881 .. 1078641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAAGACTTTGAGGTTTGTATATCAGTTACTTTGCTGAACGTTTTTTGAGGTTATACATTAAATGAATTGTTCTTTACGTATGGTAATACTATGAAGCTTTTATTAGAAAGTACAAGATCAGCTGCCTATGCTGATAAAAAAAGATAAAAAATCCAATGCCCTGAAAATTTTGTTCTTATCTTAGGTGGAAAGAAAAATGTAGTGTTAAAATAACAGAGTGGATAGATCATAGAAGTTTTTGAGCTACCTATGTTCTGCTCTGCCCTTTGGTTGGCATTAAATCGTGCCTTTAGTCACTATACTCCAAGTGTATCAAACACTTGTTGGGGTGGCTTTTGGAAGTTAATTGGGGTGGGGGATGTTTGTTTTTGCTTAGTGTCGGTACAGTTTTTCCATGGAATGGAGGTTTACTTTTATTCTGTTCATCATTCCAAAAAATGCTTTATCATTTTCTCTTTAGTTCTCATCCTTATCATTGGCAGGCAAGTATTCATATTTGACCATCTTTGGTCTAACTTCCTCATTTTTTCGTAGTTGCAGATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGGTATGGAATTTGATGTCTTCAAAACATTAGTCCTCATAGAATTGAAGAATGGGAACTCTTATTGGGAAAGCTAGCATGGGGAGATATAGGGGTACATTTCAATCAACTTTTGTATCTGAAGTTCAAATAGGATTGTAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGTGATTCCAGATAATAATGACTATGAAAACCCCCTCTATTTTGTTCCACGACTACCCGTTGGTATTGTCAGAATTTAGTGCAACTTATTTCGAGTTTGAATTAGTTATAGAATATATGATATTCGTAATCATTTAATATCTTGAAGAATATATTAGTTAGAAAATATATTTTAGATATTCGTAATTAGTTAAATTTGAATTGTAGTATATTTTATTTTATTCTCAAGATTTAGTTAGCTTATATTTTCTTATTTGTAGGTATTAGTTGGTATCTTATATCTATTTAAAGGGTTATGAATATCAATGAAGAAGAACCTTCGATCTCAATTCTATTTCTTATTCTTAGATCTTTATTCTTTTGTTGAGTAATAATATTTTCATATCTCACTTTTGAGGGGTAGATATTGCGTCAAGTATTCCTTGCCAAATTATCCTACACAATGGTCCAAGTGAGAGGAAGTTGTGGCTTAGAATCACTATTAGATAACATGACAAGTCAGTTTATCTTTTGGATTTCCTTCCCTTGGGAGGTTGTGACGAGGTTAGGGAATTTACACATATTGTTCCATTCTATAGAAACTCCAAAAGCTTCTCATTTTATAGCTAGGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGGTTGGTTTTGCGTAGGGCTCAATTAGAATATCAGTCTGTAATATTTAAAGAACGATGATTCCGTCATGCAGAAATTGTTATGGAGATTCGAAGAAAATCAGCAACATCAAGTGTAAGGCATCCATCTTATATATAGTTCAAATGCTTACTGCTCCTGGAGATACCTTGGACATCCAAAGCTCAGCGTATTAATCATTCTTTTAAAGGTATTTCCTTTTTCCATCTTCAAATATTTTATTCTCGAGAACAACATAAAAGAAACCTACCCACTTGGTTGTTTTTGTTTCTAAAGGCTTTTGCTAACCTTGACACTTGTCATTTATAAATAGCGTTGACATGAGACTGCATAGCCTTGGCAATAACTGATGCAAGAATATGTTCCCAGGTATGTGAATTGGCTATTCCTTGGTAATTTTGGTTGCACTTTATCTATATATACATATTCATACATACACACGCATCATTAAACTTAGATTTTTCTTTGTTTGCTTCCTCAACACAATCTATCGATTTTTTTCAATATAAATTTTATGCACAATTAATTAAGCAGTTGTTGGCTAGAGGCACTGACAGGATAAATCATTAAAAAGATTTTGTGTGCTAATAGGTTCATGATTAAATGAGTACAGCAATATCATTATTAGGCTCAATTCATTTACATGTGGGCTTGCTTAGAACTTTTAGTAAAATGATTGAGTTTGTTTCTATATATGGGCTTTGGAAGAAAAATTGAAGTCATCCTTACCGTTATTATACGGGAGAAAACATTTGTCATTTAAACCTCTTAATTTATAATTGAAGTCATCCTTACCGTTTTCACTTCAAACCTCTTAATTTATAATTGAATAATGAAATACACTTTATTTATCATTTTTACGCTAAGCCTAAGCATCTCTCTCACACAAACCTTTTGTCATTTAATTGGGTAAGCATCATTGCCAACGTTATAAATACACCTATTAATTTTCAGTTTTGTTGATCATTGTCAATGTTATAAATACAATTATTAATTCTCCGTTTTGTTGGGTTTAAAAAATTACAAGATAAATTGTCTAGAGCCTATTTGATAACATTATTTATTTTCAATTTTATGAAATTATTTACCCACTCATTTTTTCATAGAATACTTTGAAACTGAGAAGGTAGGGAAGGCAGAAACTGAGAAGCAGAAAATGAGAAAACATGAAAAGTAGAAGCAAAAACTGAGAATACAGGAAAAGCAGAAGCATAATACAGGAAAAGGGGAAAGCGAACACAGGAAAAGCAGGCCCTGAGAATACAGGAAAAGCAGGAACATAATGAACACAGGAAAAGCAGGCCCTGAGAATACAGGAAAAGCAGGAACATAATATGGGAAAAGCAAAAAGCAGCAGGAACTAAGAAAGCAGGAAAAGCAGAAACTAAGAATACAAATATTGAGAATATAGAGAAAGCAGGAACTAAGAATAGAAAGCAGGAACTAAGAATAGAAAGCAGGAACTAAGAATAGAAAGCAGAAACTAAGAATACAAATATACTAAGAATACAATAGAGAAAGCAGGAACTAAGAATACAAATATTGAGATTATAAGAAAGCAAGAACTAATAATACAAATATTGAGAATATAGAGAAAGGAGGAATTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACTGAAAATACAGAGAAAGCAGGAACTAAGAAAGTAGCAAAGAACTAAGAAAGTAGCAAAGGCAGTAATTAAGAAAAGGCAGTAATTAAGAAAGCAACTGAGAATACAGAGAAAGCAACTGAGAATATAGTGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

mRNA sequence

ATGGTGCAAGACTTTGAGTTCTCATCCTTATCATTGGCAGGCAAATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

Coding sequence (CDS)

ATGGTGCAAGACTTTGAGTTCTCATCCTTATCATTGGCAGGCAAATTTTGCAAGGAAGCATTGGGAGTATTCACGTATCAAACGGACAGATACAGTGGTTCCTTAACTTCTACAATGCAGTATCTCAAGATAACGAAGCTGGCTGCAAAGAAGCTAGGCACCATTACTCCTAAATCTTCTTGCAATTCACTTGACTGGGGAAAACTGGTTAAATCTTTCAGGCTTAACCATCTAGAAATTTCAGAAAAACTTAAGCACTTCAAGGCAGAACTAGACTTGAATGTTGGTTTGAGAATGCTGAAGTTAATGAACGCCGTGGAGGTCCAAAACGTGATCCAGCACACATTTGTAAAGAGGAGGACGTGTATATCTTTCCATGATCAACGAAGAAAAGGCAAAGCAACTGAGAATATAGAGAAAGCAGGAACTAAGAAAGTAGAAAAGGCAGTAATTAAGAAAGCAACAGAGAATACAGAGAAAGCAGTGACTGAGGATACAGATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACACAGAAAGCCGGAACTAAGAATACAAATATTGAGAATACAGAGAAAGCAGGAACTAAGAATACAGATATTGAGAATATAGAGAAAGCTGGCAGGAACTATGAATACAGATATTGA

Protein sequence

MVQDFEFSSLSLAGKFCKEALGVFTYQTDRYSGSLTSTMQYLKITKLAAKKLGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAELDLNVGLRMLKLMNAVEVQNVIQHTFVKRRTCISFHDQRRKGKATENIEKAGTKKVEKAVIKKATENTEKAVTEDTDIENTQKAGTKNTNIENTQKAGTKNTNIENTQKAGTKNTNIENTEKAGTKNTDIENIEKAGRNYEYRY
Homology
[Close]
BLAST of CmaCh06G002100 vs. TrEMBL
Match: A0A0A0LS72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 603 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 642

[Close]
BLAST of CmaCh06G002100 vs. NCBI nr
Match: gi|700209674|gb|KGN64770.1| (hypothetical protein Csa_1G096050 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 603 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 642

[Close]
BLAST of CmaCh06G002100 vs. NCBI nr
Match: gi|449459142|ref|XP_004147305.1| (PREDICTED: protein SIEL [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 52  LGTITPKSSCNSLDWGKLVKSFRLNHLEISEKLKHFKAEL 92
           LGTITPKS C+SLD  +++KSF L HLEISE+LKH KAEL
Sbjct: 650 LGTITPKSLCSSLDLREMLKSFTLGHLEISEELKHIKAEL 689

The following BLAST results are available for this feature:
BLAST of CmaCh06G002100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G002100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS72_CUCSA3.2e-0672.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096050 PE=4 SV=1[more]
BLAST of CmaCh06G002100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G002100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209674|gb|KGN64770.1|4.6e-0672.50hypothetical protein Csa_1G096050 [Cucumis sativus][more]
gi|449459142|ref|XP_004147305.1|4.6e-0672.50PREDICTED: protein SIEL [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G002100.1CmaCh06G002100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G002100CmoCh14G000350Cucurbita moschata (Rifu)cmacmoB792
CmaCh06G002100Cp4.1LG03g03230Cucurbita pepo (Zucchini)cmacpeB830
CmaCh06G002100Carg12454Silver-seed gourdcarcmaB1388
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh06G002100CmaCh14G000390Cucurbita maxima (Rimu)cmacmaB278
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G002100Cucumber (Gy14) v2cgybcmaB428
CmaCh06G002100Cucumber (Gy14) v2cgybcmaB561
CmaCh06G002100Melon (DHL92) v3.6.1cmamedB855
CmaCh06G002100Melon (DHL92) v3.6.1cmamedB876
CmaCh06G002100Silver-seed gourdcarcmaB0216
CmaCh06G002100Silver-seed gourdcarcmaB0777
CmaCh06G002100Silver-seed gourdcarcmaB0952
CmaCh06G002100Cucumber (Chinese Long) v3cmacucB0966
CmaCh06G002100Cucumber (Chinese Long) v3cmacucB0988
CmaCh06G002100Watermelon (97103) v2cmawmbB844
CmaCh06G002100Watermelon (97103) v2cmawmbB849
CmaCh06G002100Watermelon (97103) v2cmawmbB855
CmaCh06G002100Wax gourdcmawgoB0976
CmaCh06G002100Wax gourdcmawgoB1036
CmaCh06G002100Cucurbita maxima (Rimu)cmacmaB520
CmaCh06G002100Cucurbita maxima (Rimu)cmacmaB542
CmaCh06G002100Cucurbita maxima (Rimu)cmacmaB543
CmaCh06G002100Cucumber (Gy14) v1cgycmaB0356
CmaCh06G002100Cucumber (Gy14) v1cgycmaB0506
CmaCh06G002100Cucurbita moschata (Rifu)cmacmoB826
CmaCh06G002100Cucurbita moschata (Rifu)cmacmoB828
CmaCh06G002100Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G002100Wild cucumber (PI 183967)cmacpiB827
CmaCh06G002100Wild cucumber (PI 183967)cmacpiB851
CmaCh06G002100Cucumber (Chinese Long) v2cmacuB815
CmaCh06G002100Cucumber (Chinese Long) v2cmacuB836
CmaCh06G002100Melon (DHL92) v3.5.1cmameB755
CmaCh06G002100Melon (DHL92) v3.5.1cmameB775
CmaCh06G002100Watermelon (Charleston Gray)cmawcgB726
CmaCh06G002100Watermelon (Charleston Gray)cmawcgB736
CmaCh06G002100Watermelon (97103) v1cmawmB788
CmaCh06G002100Watermelon (97103) v1cmawmB806
CmaCh06G002100Cucurbita pepo (Zucchini)cmacpeB809
CmaCh06G002100Cucurbita pepo (Zucchini)cmacpeB826
CmaCh06G002100Cucurbita pepo (Zucchini)cmacpeB852
CmaCh06G002100Bottle gourd (USVL1VR-Ls)cmalsiB748
CmaCh06G002100Bottle gourd (USVL1VR-Ls)cmalsiB752
CmaCh06G002100Bottle gourd (USVL1VR-Ls)cmalsiB754