CmaCh05G003980.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G003980.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plant protein of unknown function (DUF247)
Location	Cma_Chr05 : 1736707 .. 1737359 (+)
Sequence length	516

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTCAGCCTACACCCCTCAAGTTATTTCCATCGGTCCATTTCATCATCGTAGTCGAAATAATTTAATAGTCACAGAACAATATAAGCTTCAAGGTCTTAGTAACTTTCTACATCGTCTAGATAACAAAATGAGTTCATTGGAGTTTCTAGTTAAAACTACTCAAGCCTTGATAAAAGAAGCCCGAAATTGCTATGCAGAACCTATAAACATGAGTAATCGAAGATTTTGTTAAGATGATGCTCGTAGATGGTTGTTTCATAGTGGAGTTCTTAATTCTATATTATAAACAATATGACCCGACCGCATTCTTTAAAATTCAAAACAATGTAGATCTTTCCTTCTACAAAAGAATTTCCCATATATATTGATTTGATTAAGCTTGAAAATCAAATCCGTTTCTTTCTTCTTCAACATTTGCTCAACCTCATACCACAAAACTATGCTCCCTTCTCGTTTATAGGACTGATATATGTGTTTTCACAACGTGGATTGATATATAATTATTCTCTTCCTAATGCCTTATCGATAAAACCAAAACACTTTGTTGATTTCTTAAACTTCTACTTTGTCGTGCCCACTATGTCTTTTGAACACACCATTAATAACGAGAAGATTATTAATCATCCATTGATAACTGAGCTTTGA

mRNA sequence

ATGGATAATTCAGCCTACACCCCTCAAGTTATTTCCATCGGTCCATTTCATCATCGTAGTCGAAATAATTTAATAGTCACAGAACAATATAAGCTTCAAGGTCTTAGTAACTTTCTACATCGTCTAGATAACAAAATGAGTTCATTGGAGTTTCTAGTTAAAACTACTCAAGCCTTGATAAAAGAAGCCCGAAATTGCTATGCAGAACCTATAAACATGAAATTTCCCATATATATTGATTTGATTAAGCTTGAAAATCAAATCCGTTTCTTTCTTCTTCAACATTTGCTCAACCTCATACCACAAAACTATGCTCCCTTCTCGTTTATAGGACTGATATATGTGTTTTCACAACGTGGATTGATATATAATTATTCTCTTCCTAATGCCTTATCGATAAAACCAAAACACTTTGTTGATTTCTTAAACTTCTACTTTGTCGTGCCCACTATGTCTTTTGAACACACCATTAATAACGAGAAGATTATTAATCATCCATTGATAACTGAGCTTTGA

Coding sequence (CDS)

ATGGATAATTCAGCCTACACCCCTCAAGTTATTTCCATCGGTCCATTTCATCATCGTAGTCGAAATAATTTAATAGTCACAGAACAATATAAGCTTCAAGGTCTTAGTAACTTTCTACATCGTCTAGATAACAAAATGAGTTCATTGGAGTTTCTAGTTAAAACTACTCAAGCCTTGATAAAAGAAGCCCGAAATTGCTATGCAGAACCTATAAACATGAAATTTCCCATATATATTGATTTGATTAAGCTTGAAAATCAAATCCGTTTCTTTCTTCTTCAACATTTGCTCAACCTCATACCACAAAACTATGCTCCCTTCTCGTTTATAGGACTGATATATGTGTTTTCACAACGTGGATTGATATATAATTATTCTCTTCCTAATGCCTTATCGATAAAACCAAAACACTTTGTTGATTTCTTAAACTTCTACTTTGTCGTGCCCACTATGTCTTTTGAACACACCATTAATAACGAGAAGATTATTAATCATCCATTGATAACTGAGCTTTGA

Protein sequence

MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALIKEARNCYAEPINMKFPIYIDLIKLENQIRFFLLQHLLNLIPQNYAPFSFIGLIYVFSQRGLIYNYSLPNALSIKPKHFVDFLNFYFVVPTMSFEHTINNEKIINHPLITEL

Homology

[Close]

BLAST of CmaCh05G003980.1 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 98/199 (49.25%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMS--------SLEFL 60
           M+  AY PQ+ISIGPF++ +  NLI  EQYKLQG +NFLHR+ NKMS        SL  L
Sbjct: 74  MNPKAYAPQLISIGPFYYHAHKNLIANEQYKLQGFNNFLHRV-NKMSLEQQERTRSLNDL 133

Query: 61  VKTTQALIKEARNCYAEPINMKFPIYI--------------DLIKLENQIRFFLLQHLLN 120
           VK  Q+ +KEARNCYAE INM    +I              DLIKLENQ+ FF+LQHL +
Sbjct: 134 VKKAQSWVKEARNCYAESINMNDEDFIKMMLVDERIPDIDDDLIKLENQLPFFVLQHLFD 193

Query: 121 LIPQ-NYAPFSFIGLIYVFSQRGLIYNYSLPNALSIKPKHFVDFLNFYFVVPTMSFEH-- 172
           LIP+ N  P  F  L Y +   G + NY   + LSIKPKHF+DFL+FYF VP    EH  
Sbjct: 194 LIPKHNDNPNCFKQLTYKYLNMGWLENYEPSDILSIKPKHFIDFLSFYF-VPHHRCEHDQ 253

[Close]

BLAST of CmaCh05G003980.1 vs. TrEMBL
Match: A0A0A0LQ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380070 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.0e-22
Identity = 77/176 (43.75%), Postives = 96/176 (54.55%), Query Frame = 1


Query: 3   NSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRL-DNKMSSLEFLVKTTQ-ALI 62
           +S Y PQVISIGPFHH S++ L VTE+YK QGL NFL RL D+K  SLE L K  Q + +
Sbjct: 16  DSLYVPQVISIGPFHHGSKD-LNVTERYKFQGLRNFLRRLNDHKEKSLEELTKIAQLSWV 75

Query: 63  KEARNCYAEPINMKF--------------PIYIDLIKLENQIRFFLLQHLLNLIPQ---- 122
           +EA  CY  PI+M                 +Y DLIKLENQ+ FFLLQ L  LIP+    
Sbjct: 76  EEACGCYIYPIDMDDHEFVKMMCVDGIIPDVYFDLIKLENQLPFFLLQRLFELIPKENNL 135

Query: 123 -------NYAPFSFIGLIYVFSQRGLIYNY-SLPNAL---SIKPKHFVDFLNFYFV 148
                   ++  SF+ L + F   G   NY  L   +      PKH VDFL  Y++
Sbjct: 136 KSLIPNNEFSTISFLELTFQFLHLGCAENYVQLGERIVWSKFDPKHLVDFLKLYYI 190

[Close]

BLAST of CmaCh05G003980.1 vs. TrEMBL
Match: A0A0A0LKU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100540 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 66/197 (33.50%), Postives = 98/197 (49.75%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDN-------------KMS 60
           M+  AY PQ+ SIGPFH  ++ +LI  EQYKLQ   NFL+ + N             K  
Sbjct: 27  MNTKAYLPQIFSIGPFHSNTQKDLIANEQYKLQAFVNFLYHMINGNDHNIVSLKDILKAG 86

Query: 61  SLEFLVKTTQALIKEARNCYAEPINMK-----FPIYIDLIKLENQI--------RFFLLQ 120
           +L+F+V+ + + +++ R+ YA  INMK       + +D+     Q          FFLLQ
Sbjct: 87  TLKFVVQKSHSWMEQVRDSYASSINMKEEEFFIMMLVDIACFIIQFFRHPSLTGPFFLLQ 146

Query: 121 HLLNLIP-----------QNYAPFSFIGLIYVFSQRGLIYNYSLPNALSIKPKHFVDFLN 161
            LLN +P           Q+ A +S I   Y FS        S+  +  I+PKH VD+LN
Sbjct: 147 RLLNFLPTADPVYLLMCEQDIANYSTIFYGYTFS--------SMDGSRHIEPKHLVDYLN 206

[Close]

BLAST of CmaCh05G003980.1 vs. TrEMBL
Match: A0A0A0K4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDN-KMSSLEFLVKTTQAL 60
           M  + Y PQVISIGPFHH S++ L  TE YKLQGL NFL RLDN K  SLE LVK  ++ 
Sbjct: 57  MKKTTYVPQVISIGPFHHGSKD-LNATEPYKLQGLRNFLRRLDNHKEKSLEELVKIARSW 116

Query: 61  IKEARNCYAEPINMKFPIYIDLIKLEN--QIRFFLL 94
           I+EAR+CY +PI+M    ++ ++ ++    + FF+L
Sbjct: 117 IEEARSCYVDPIDMDDYEFVKMMLVDGCFIVEFFIL 151

[Close]

BLAST of CmaCh05G003980.1 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-13
Identity = 74/235 (31.49%), Postives = 103/235 (43.83%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDN--------KMSSLEFL 60
           M+  AY PQ ISIGPF++ +  NL   EQYK Q + NFL R+          +  SLE L
Sbjct: 66  MNPKAYVPQHISIGPFYYHADENLRANEQYKFQSVINFLRRVYKIESLEQLLQTRSLEDL 125

Query: 61  VKTTQALIKEARNCYAEPINMKFPIYIDLIKLEN--QIRFFLLQHLLNLIP--------Q 120
           VK  Q+ +KEARNCYAE I+M    +I ++ ++    + FF+L +    +P        +
Sbjct: 126 VKKAQSWVKEARNCYAESIDMNDEDFIKMMLMDGCFIVEFFILDYEEYKMPDESFFPKIE 185

Query: 121 NYAPFSFI---------GLIYVFSQRGLIYNYSLPNAL---------------------- 172
           N    SF           LI + +Q        L + +                      
Sbjct: 186 NNVSMSFYKERIPDIDDDLIKLENQLPFFILQHLYDLIPKQDDNPKCFKELTCKYLKMGW 245

[Close]

BLAST of CmaCh05G003980.1 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 46/193 (23.83%), Postives = 84/193 (43.52%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALI 60
           ++  AYTP+++S GP H R +  L   E  K + L +F+ R +   SSLE LV+  +   
Sbjct: 305 LNPDAYTPRLVSFGPLH-RGKEELQAMEDQKYRYLLSFIPRTN---SSLEDLVRLARTWE 364

Query: 61  KEARNCYAEPINMKFPIYIDLIKLENQIRFFLLQHLLN---------------------- 120
           + AR+CYAE + +    +++++ ++     FL++ LL                       
Sbjct: 365 QNARSCYAEDVKLHSDEFVEMLVVDGS---FLVELLLRSHYPRLRGENDRIFGNSMMITD 424

Query: 121 -----LIPQNYAPFSFIGLIYVFSQRGLIYNYSLPNALSIKPKHFVDFLNFYFVVPTMSF 167
                ++ +N  PF  +  I++       Y    P+ + +  +HF  FL+          
Sbjct: 425 VCRDMILIENQLPFFVVKEIFLLLLN--YYQQGTPSIIQLAQRHFSYFLS---------- 476

[Close]

BLAST of CmaCh05G003980.1 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 51.2 bits (121), Expect = 7.3e-07
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 2   DNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALIK 61
           D  +Y PQ++SIGP+HH    +L+  E++K + ++  + R  +    +E  +   + L +
Sbjct: 117 DTKSYMPQIVSIGPYHH-GHKHLMPMERHKWRAVNMVMARAKH---DIEMYIDAMKELEE 176

Query: 62  EARNCYAEPINMKFPIYIDLIKLENQIRFFLLQHLLNLIPQNYAPFSFIGLIYVFSQRGL 121
           +AR CY  PINM    +I+++ L+     F+++ +     + +    +     VF  RGL
Sbjct: 177 KARACYQGPINMNRNEFIEMLVLDG---VFIIE-IFKGTSEGFQEIGYAPNDPVFGMRGL 229

Query: 122 I 123
           +
Sbjct: 237 M 229

[Close]

BLAST of CmaCh05G003980.1 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 33/123 (26.83%), Postives = 63/123 (51.22%), Query Frame = 1


Query: 2   DNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALIK 61
           D  +Y PQ +S+GP+HH  +  L   E++K + L+  L RL  +   +E      + L +
Sbjct: 126 DKKSYFPQTVSLGPYHH-GKKRLRPMERHKWRALNKVLKRLKQR---IEMYTNAMRELEE 185

Query: 62  EARNCYAEPINMKFPIYIDLIKLENQIRFFLLQHLLNLIPQNYAPFSFIGLIYVFSQRGL 121
           +AR CY  PI++    + +++ L+     F+L+ L     + +    +     VF+ RGL
Sbjct: 186 KARACYEGPISLSRNEFTEMLVLDG---CFVLE-LFRGTVEGFTEIGYARNDPVFAMRGL 240

Query: 122 IYN 125
           +++
Sbjct: 246 MHS 240

[Close]

BLAST of CmaCh05G003980.1 vs. TAIR10
Match: AT3G44710.1 (AT3G44710.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 4   SAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALIKEA 63
           +AY P+V+S+GP+HH  + NL + E++KL+ L  F+     K      L+K    L ++ 
Sbjct: 63  AAYEPRVVSLGPYHH-GKKNLQMIEEHKLRFLKIFMDEAKRKGVDTNGLIKAVSVLEEDI 122

Query: 64  RNCYAEPINMKFPIYIDLIKLE 86
           R+ Y+E +       I+++ L+
Sbjct: 123 RDSYSESLYSDGKKLIEMMVLD 143

[Close]

BLAST of CmaCh05G003980.1 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06
Identity = 35/124 (28.23%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 2   DNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKTTQALIK 61
           D  +Y PQ +SIGP+HH  + +L   E++K + ++  + R  +   ++E  +   + L +
Sbjct: 103 DKKSYLPQTVSIGPYHH-GKVHLRPMERHKWRAVNMIMARTKH---NIEMYIDAMKELEE 162

Query: 62  EARNCYAEPINMK-FPIYIDLIKLENQIRFFLLQHLLNLIPQNYAPFSFIGLIYVFSQRG 121
           EAR CY  PI+MK    + +++ L+     F+L+     I Q +    +     VF++RG
Sbjct: 163 EARACYQGPIDMKNSNEFTEMLVLDG---CFVLELFKGTI-QGFQKIGYARNDPVFAKRG 218

Query: 122 LIYN 125
           L+++
Sbjct: 223 LMHS 218

[Close]

BLAST of CmaCh05G003980.1 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-34
Identity = 98/199 (49.25%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMS--------SLEFL 60
           M+  AY PQ+ISIGPF++ +  NLI  EQYKLQG +NFLHR+ NKMS        SL  L
Sbjct: 74  MNPKAYAPQLISIGPFYYHAHKNLIANEQYKLQGFNNFLHRV-NKMSLEQQERTRSLNDL 133

Query: 61  VKTTQALIKEARNCYAEPINMKFPIYI--------------DLIKLENQIRFFLLQHLLN 120
           VK  Q+ +KEARNCYAE INM    +I              DLIKLENQ+ FF+LQHL +
Sbjct: 134 VKKAQSWVKEARNCYAESINMNDEDFIKMMLVDERIPDIDDDLIKLENQLPFFVLQHLFD 193

Query: 121 LIPQ-NYAPFSFIGLIYVFSQRGLIYNYSLPNALSIKPKHFVDFLNFYFVVPTMSFEH-- 172
           LIP+ N  P  F  L Y +   G + NY   + LSIKPKHF+DFL+FYF VP    EH  
Sbjct: 194 LIPKHNDNPNCFKQLTYKYLNMGWLENYEPSDILSIKPKHFIDFLSFYF-VPHHRCEHDQ 253

[Close]

BLAST of CmaCh05G003980.1 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 85/229 (37.12%), Postives = 113/229 (49.34%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMS--SLEFLVKTTQA 60
           M+  AY PQVISIGPFHH S++ L  TE+YKLQGL NFL RLD+  +  SLE LVK  Q+
Sbjct: 58  MNRIAYVPQVISIGPFHHGSKD-LNATERYKLQGLRNFLRRLDDHKAEKSLEELVKIAQS 117

Query: 61  LIKEARNCYAEPI---------------------------------NMKFP--------- 120
            ++EAR CYA+PI                                 + KFP         
Sbjct: 118 WVEEARRCYADPIDMDDHEFVKMMLVDGCFIVEFFILVHNQYTTSADHKFPQIDPNVDLL 177

Query: 121 --------IYIDLIKLENQIRFFLLQHLLNLIPQ-----------NYAPFSFIGLIYVFS 163
                   +Y DLIKLENQ+ FFLLQ L  LIP+            ++  SF+ L + F 
Sbjct: 178 FYQGIIPDVYFDLIKLENQLPFFLLQRLFELIPKENNPKSLIPDNEFSTISFLELTFEFL 237

[Close]

BLAST of CmaCh05G003980.1 vs. NCBI nr
Match: gi|700207808|gb|KGN62927.1| (hypothetical protein Csa_2G380070 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 5.8e-22
Identity = 77/176 (43.75%), Postives = 96/176 (54.55%), Query Frame = 1


Query: 3   NSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRL-DNKMSSLEFLVKTTQ-ALI 62
           +S Y PQVISIGPFHH S++ L VTE+YK QGL NFL RL D+K  SLE L K  Q + +
Sbjct: 16  DSLYVPQVISIGPFHHGSKD-LNVTERYKFQGLRNFLRRLNDHKEKSLEELTKIAQLSWV 75

Query: 63  KEARNCYAEPINMKF--------------PIYIDLIKLENQIRFFLLQHLLNLIPQ---- 122
           +EA  CY  PI+M                 +Y DLIKLENQ+ FFLLQ L  LIP+    
Sbjct: 76  EEACGCYIYPIDMDDHEFVKMMCVDGIIPDVYFDLIKLENQLPFFLLQRLFELIPKENNL 135

Query: 123 -------NYAPFSFIGLIYVFSQRGLIYNY-SLPNAL---SIKPKHFVDFLNFYFV 148
                   ++  SF+ L + F   G   NY  L   +      PKH VDFL  Y++
Sbjct: 136 KSLIPNNEFSTISFLELTFQFLHLGCAENYVQLGERIVWSKFDPKHLVDFLKLYYI 190

[Close]

BLAST of CmaCh05G003980.1 vs. NCBI nr
Match: gi|659088842|ref|XP_008445190.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 65/181 (35.91%), Postives = 96/181 (53.04%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRL---DNKMSSLE------- 60
           +++ AY PQ ISIGPFH+R+R +LI  E YKLQG  NFL R+   + ++ SLE       
Sbjct: 65  INDKAYVPQFISIGPFHYRTRKDLIANEHYKLQGFYNFLRRININEKQVESLEEDQVKIS 124

Query: 61  --FLVKTTQALIKEARNCYAEPINMKFPIYIDLIKLEN--QIRFFLLQHLLNLIPQNYAP 120
              LV+ + + +KEA NCYAEPI M+   +I ++ ++    + FFLL +          P
Sbjct: 125 SKVLVEKSHSWMKEAWNCYAEPIKMEEEEFIIMMLVDACFIVEFFLLCYGSFQEDYEAGP 184

Query: 121 FSFIGLIYV-FSQRGLIYNYSLPNALSIKPKHFVDFLNFYFVV-----PTMSFEHTINNE 162
            S I L Y+     G +  Y + N     P+H +D L+FYF+      P M+ +H     
Sbjct: 185 ISLIDLTYMALKAFGFVREYEINNLYHKNPEHILDLLSFYFLPVPHNDPDMNKQHDKRKN 244

[Close]

BLAST of CmaCh05G003980.1 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-17
Identity = 86/236 (36.44%), Postives = 114/236 (48.31%), Query Frame = 1


Query: 1   MDNSAYTPQVISIGPFHHRSRNNLIVTEQYKLQGLSNFLHRLDNKMSSLEFLVKT----- 60
           M+  AY PQ+ISIGPFH+ +  NLI  EQYKLQG  N+L R+  KM SLE LV+T     
Sbjct: 72  MNPKAYAPQLISIGPFHYHTHKNLIANEQYKLQGFINYLRRV-YKMESLEQLVRTKSVED 131

Query: 61  ----TQALIKEARNCYAEPINMKFPIYIDLIKLEN--QIRFFLL------QHLLNLIPQ- 120
                Q+ ++EARNCYAE INM    +I ++ ++    + FF+L      +   +L PQ 
Sbjct: 132 LVKRAQSWVEEARNCYAETINMNDEDFIKMMLVDGCFIVEFFILDFEEYNESHESLFPQI 191

Query: 121 -NYAPFSFI---------GLIYVFSQRGLIYNYSL----------PNA------------ 172
            N    SF           LI + +Q        L          PN             
Sbjct: 192 ENNVSMSFYKERIPDIDEDLIKLENQLPFFVLQHLFDLIPKHKDAPNCFKQLTYEYLTMG 251

The following BLAST results are available for this feature:

BLAST of CmaCh05G003980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G003980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM96_CUCSA	1.6e-34	49.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]
A0A0A0LQ49_CUCSA	4.0e-22	43.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380070 PE=4 SV=1	[more]
A0A0A0LKU4_CUCSA	1.9e-16	33.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100540 PE=4 SV=1	[more]
A0A0A0K4A0_CUCSA	1.4e-14	51.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1	[more]
A0A0A0LLX1_CUCSA	7.6e-13	31.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]

BLAST of CmaCh05G003980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31980.1	1.1e-07	23.83	unknown protein	[more]
AT3G50160.1	7.3e-07	26.45	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	2.8e-06	26.83	Plant protein of unknown function (DUF247)	[more]
AT3G44710.1	4.7e-06	30.49	Plant protein of unknown function (DUF247)	[more]
AT3G50150.1	8.0e-06	28.23	Plant protein of unknown function (DUF247)	[more]

BLAST of CmaCh05G003980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207809\|gb\|KGN62928.1\|	2.3e-34	49.25	hypothetical protein Csa_2G380080 [Cucumis sativus]	[more]
gi\|659088834\|ref\|XP_008445186.1\|	2.0e-22	37.12	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]
gi\|700207808\|gb\|KGN62927.1\|	5.8e-22	43.75	hypothetical protein Csa_2G380070 [Cucumis sativus]	[more]
gi\|659088842\|ref\|XP_008445190.1\|	1.1e-17	35.91	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|659088838\|ref\|XP_008445188.1\|	3.3e-17	36.44	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G003980	CmaCh05G003980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003980.1	CmaCh05G003980.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003980.1.exon.1	CmaCh05G003980.1.exon.1	exon
CmaCh05G003980.1.exon.2	CmaCh05G003980.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003980.1.CDS.1	CmaCh05G003980.1.CDS.1	CDS
CmaCh05G003980.1.CDS.2	CmaCh05G003980.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 2..73 score: 3.3E-13coord: 77..148 score: 5.
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..147 score: 1.1