CmaCh05G003950.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G003950.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plant protein of unknown function (DUF247)
Location	Cma_Chr05 : 1730567 .. 1731703 (+)
Sequence length	738

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAACAATTACCTCTGGTTAATGAAGAATGTAGCATCTTTCGAGTTCATAAACTATTACGCAAGATGAATAATATAGCCTATATCCCTCAAGTCATTTCCATAGATCCATTTCATCATCATAGTCAAAAGGATTTGATAGCTACCGAACAATATAAGCTTCGATATTGTATTAATTTTCTAAATCGTTTGGATAACAAGATAGACTCATTAGAATTCCTTGTGAAAACTACTCAAAGTTGGATGAAAGAAGCTCGAAATTGCTATGAAGAACCCATAAACATGAGCGATGAAGATTTCATTCAAATGATGTTGGTGGATAGTTGTTGTGTAGTGGAGTTTTTGATATTGTATTATGTCGAACAACACCGAAATTCCTCACCTCAAACTCGAGACTATTTCAATCTTTACTTCTACCAAAGGGAACATGAGATATGTCTTGATTCGATTAAGCTAGAAAATCAAGTCCCTTTCTTTGTTCTTGAATGTTTGTTCCACCTTATACCACAAAGTGATGACCGCTTCGTCCATATCAACAAAACCTTACATAAGCACTGCAATAGACGATGGAACAAAGCAAAAGCTTCACTCAAACCCAACTATTTCAATACATCATGGGCTATATTCGGTACTATATCTGCATTTCATAGCTAGCCAAATCTATCTATATAATATAGATATGTTTCTTTTAAATTTACTATGTTGCTCCTTACTGTGTTATATGCTATCTTTATATTTTCTAATGTTTTCTAATAAACATTATGTTATATTTAAAACTGTGAGACTAACAGTAATACAGGCAAAAACAGACAATATATACTCACGATCAAGCATACATTCTTAACTTTAACCTCTATAAAGACATTTTTTTCATAACATGGAAAAGAAACATAATGCTTTATTAAAAAGTGCTTTTACAAATGCTTGTATATTCAAATTCAAAGAAATAAAGGGAAGGAGAGAAAACTTCAAAAACTTTAACCCATTTATAAACGAGTTCTTAACTTTACATTCTTCTTTCGAATAGCTGACCATTACAATTATCACAAAAATATTATCGACCCAAATTTGATTAAGTACAATTTTAAATTGTCATATTTTCATGTAATTCTTAGCCTACAAGTATCATTTTAA

mRNA sequence

ATGATGGAACAATTACCTCTGGTTAATGAAGAATGTAGCATCTTTCGAGTTCATAAACTATTACGCAAGATGAATAATATAGCCTATATCCCTCAAGTCATTTCCATAGATCCATTTCATCATCATAGTCAAAAGGATTTGATAGCTACCGAACAATATAAGCTTCGATATTGTATTAATTTTCTAAATCGTTTGGATAACAAGATAGACTCATTAGAATTCCTTGTGAAAACTACTCAAAGTTGGATGAAAGAAGCTCGAAATTGCTATGAAGAACCCATAAACATGAGCGATGAAGATTTCATTCAAATGATGTTGGTGGATAGTTGTTGTGTAGTGGAGTTTTTGATATTGTATTATGTCGAACAACACCGAAATTCCTCACCTCAAACTCGAGACTATTTCAATCTTTACTTCTACCAAAGGGAACATGAGATATGTCTTGATTCGATTAAGCTAGAAAATCAAGTCCCTTTCTTTGTTCTTGAATGTTTGTTCCACCTTATACCACAAAGTGATGACCGCTTCGTCCATATCAACAAAACCTTACATAAGCACTGCAATAGACGATGGAACAAAGCAAAAGCTTCACTCAAACCCAACTATTTCAATACATCATGGGCTATATTCGCTGACCATTACAATTATCACAAAAATATTATCGACCCAAATTTGATTAAGTACAATTTTAAATTGTCATATTTTCATGTAATTCTTAGCCTACAAGTATCATTTTAA

Coding sequence (CDS)

ATGATGGAACAATTACCTCTGGTTAATGAAGAATGTAGCATCTTTCGAGTTCATAAACTATTACGCAAGATGAATAATATAGCCTATATCCCTCAAGTCATTTCCATAGATCCATTTCATCATCATAGTCAAAAGGATTTGATAGCTACCGAACAATATAAGCTTCGATATTGTATTAATTTTCTAAATCGTTTGGATAACAAGATAGACTCATTAGAATTCCTTGTGAAAACTACTCAAAGTTGGATGAAAGAAGCTCGAAATTGCTATGAAGAACCCATAAACATGAGCGATGAAGATTTCATTCAAATGATGTTGGTGGATAGTTGTTGTGTAGTGGAGTTTTTGATATTGTATTATGTCGAACAACACCGAAATTCCTCACCTCAAACTCGAGACTATTTCAATCTTTACTTCTACCAAAGGGAACATGAGATATGTCTTGATTCGATTAAGCTAGAAAATCAAGTCCCTTTCTTTGTTCTTGAATGTTTGTTCCACCTTATACCACAAAGTGATGACCGCTTCGTCCATATCAACAAAACCTTACATAAGCACTGCAATAGACGATGGAACAAAGCAAAAGCTTCACTCAAACCCAACTATTTCAATACATCATGGGCTATATTCGCTGACCATTACAATTATCACAAAAATATTATCGACCCAAATTTGATTAAGTACAATTTTAAATTGTCATATTTTCATGTAATTCTTAGCCTACAAGTATCATTTTAA

Protein sequence

MMEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHLIPQSDDRFVHINKTLHKHCNRRWNKAKASLKPNYFNTSWAIFADHYNYHKNIIDPNLIKYNFKLSYFHVILSLQVSF

Homology

[Close]

BLAST of CmaCh05G003950.1 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-11
Identity = 50/157 (31.85%), Postives = 77/157 (49.04%), Query Frame = 1


Query: 10  EECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKI 69
           E C IFRV +    +N  AY P+V+SI P+ H+ +K L   +Q+K R    FL+    K 
Sbjct: 44  ESCCIFRVPESFVALNPKAYKPKVVSIGPY-HYGEKHLQMIQQHKPRLLQLFLDEAKKKD 103

Query: 70  DSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQHRNSSP 129
                LVK       + R  Y E +  +  D + MM++D C    F+++ ++    N   
Sbjct: 104 VEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGC----FILMVFLIMSGNIEL 163

Query: 130 QTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLF 167
                F++ +      I  D + LENQVPFFVL+ L+
Sbjct: 164 SEDPIFSIPWLL--SSIQSDLLLLENQVPFFVLQTLY 192

[Close]

BLAST of CmaCh05G003950.1 vs. TrEMBL
Match: A0A0A0K4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 94/178 (52.81%), Postives = 124/178 (69.66%), Query Frame = 1


Query: 2   MEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINF 61
           +EQLP+VN+EC I+RV KLL +M    Y+PQVISI PFHH S KDL ATE YKL+   NF
Sbjct: 35  LEQLPVVNKECKIYRVPKLLCQMKKTTYVPQVISIGPFHHGS-KDLNATEPYKLQGLRNF 94

Query: 62  LNRLDN-KIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYY 121
           L RLDN K  SLE LVK  +SW++EAR+CY +PI+M D +F++MMLVD C +VEF IL Y
Sbjct: 95  LRRLDNHKEKSLEELVKIARSWIEEARSCYVDPIDMDDYEFVKMMLVDGCFIVEFFILVY 154

Query: 122 VE---QHRNSSPQTRDYFNLYFYQR-EHEICLDSIKLENQVPFFVLECLFHLIPQSDD 175
            +    + +  PQ      L FYQ    ++  D +KLENQ+PFF+L+ LF L+P+ ++
Sbjct: 155 SQYTTSNDHKFPQIDPNAGLLFYQGIIPDMYFDLLKLENQLPFFILQRLFELMPKENN 211

[Close]

BLAST of CmaCh05G003950.1 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-37
Identity = 89/184 (48.37%), Postives = 125/184 (67.93%), Query Frame = 1


Query: 1   MMEQLPLVNEECS-IFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCI 60
           M+E LP VN +C+ I++V K LR++N+ AY+PQ ISI PFH+ ++KDLIA E YKL+   
Sbjct: 28  MLEGLPRVNPKCNTIYQVPKELREINDKAYVPQFISIGPFHYRTRKDLIANEHYKLQGFF 87

Query: 61  NFLNRL-----------DNKID-SLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLV 120
           NFL R+           +N+++ S + LV+ +  W+KEA NCY EPI M DE+FI MMLV
Sbjct: 88  NFLGRISIINSHIQLLEENQVNISSKVLVEKSHDWVKEAWNCYAEPIKMKDEEFIIMMLV 147

Query: 121 DSCCVVEFLILYYVEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFH 172
           D+C +VEF +LYY   H +      +  +L++Y   +EI LD IKLENQVPFF+L+ LF 
Sbjct: 148 DACFIVEFFLLYYGSFHEDGKLFNAE-LSLFYYGVFYEILLDLIKLENQVPFFLLQNLFD 207

[Close]

BLAST of CmaCh05G003950.1 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 93/199 (46.73%), Postives = 126/199 (63.32%), Query Frame = 1


Query: 6   PLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRL 65
           P +  +CSI+RV K  R+MN  AY+PQ ISI PF++H+ ++L A EQYK +  INFL R+
Sbjct: 48  PALKNQCSIYRVPKQQREMNPKAYVPQHISIGPFYYHADENLRANEQYKFQSVINFLRRV 107

Query: 66  DNKIDSLEFL---------VKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFL 125
             KI+SLE L         VK  QSW+KEARNCY E I+M+DEDFI+MML+D C +VEF 
Sbjct: 108 -YKIESLEQLLQTRSLEDLVKKAQSWVKEARNCYAESIDMNDEDFIKMMLMDGCFIVEFF 167

Query: 126 ILYYVE---QHRNSSPQTRDYFNLYFY-QREHEICLDSIKLENQVPFFVLECLFHLIPQS 185
           IL Y E      +  P+  +  ++ FY +R  +I  D IKLENQ+PFF+L+ L+ LIP+ 
Sbjct: 168 ILDYEEYKMPDESFFPKIENNVSMSFYKERIPDIDDDLIKLENQLPFFILQHLYDLIPKQ 227

Query: 186 DDRFVHINKTLHKHCNRRW 192
           DD      +   K+    W
Sbjct: 228 DDNPKCFKELTCKYLKMGW 245

[Close]

BLAST of CmaCh05G003950.1 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 1


Query: 2   MEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINF 61
           ++QL +VN EC+I+RV KLL +MN  AY+PQVISI P HH S KDL ATE YKL+   NF
Sbjct: 20  LKQLHVVNTECNIYRVPKLLCQMNMTAYVPQVISIGPLHHGS-KDLNATECYKLQGLRNF 79

Query: 62  LNRLDNKIDS--LEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILY 121
           L R D+      LE LV+ TQ ++  AR+CY +PI+M D +F++MMLVD C +VE  IL 
Sbjct: 80  LRRFDDSYGEKLLENLVEITQFYVGRARSCYADPIDMDDHEFVKMMLVDGCFIVELFILV 139

Query: 122 Y----VEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHLIPQSDDR 176
           +     + H+ S          Y+     ++  D IKLENQ+PFF+L+ LF LIP+ +++
Sbjct: 140 HNITTSDDHKFSKIDQNVDLLFYYQGIIPDVYFDLIKLENQLPFFILQLLFDLIPRDNNQ 198

[Close]

BLAST of CmaCh05G003950.1 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.7e-32
Identity = 92/216 (42.59%), Postives = 123/216 (56.94%), Query Frame = 1


Query: 1   MMEQLPLVNE-ECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCI 60
           M++Q+P   E +CSI+RV K L +MN  AY PQ+ISI PF++H+ K+LIA EQYKL+   
Sbjct: 50  MLDQVPSAQEKQCSIYRVPKQLCEMNPKAYAPQLISIGPFYYHAHKNLIANEQYKLQGFN 109

Query: 61  NFLNRLDN-------KIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCV 120
           NFL+R++        +  SL  LVK  QSW+KEARNCY E INM+DEDFI+MMLVD    
Sbjct: 110 NFLHRVNKMSLEQQERTRSLNDLVKKAQSWVKEARNCYAESINMNDEDFIKMMLVD---- 169

Query: 121 VEFLILYYVEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHLIPQS 180
                                       +R  +I  D IKLENQ+PFFVL+ LF LIP+ 
Sbjct: 170 ----------------------------ERIPDIDDDLIKLENQLPFFVLQHLFDLIPKH 229

Query: 181 DDRFVHINKTLHKHCNRRWNKAK-----ASLKPNYF 204
           +D      +  +K+ N  W +        S+KP +F
Sbjct: 230 NDNPNCFKQLTYKYLNMGWLENYEPSDILSIKPKHF 233

[Close]

BLAST of CmaCh05G003950.1 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein)

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-21
Identity = 54/165 (32.73%), Postives = 99/165 (60.00%), Query Frame = 1


Query: 5   LPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNR 64
           L  ++ +C I++V   LR++N  AY P+++S  P H   +++L A E  K RY ++F+ R
Sbjct: 286 LSSLSTKCCIYKVPNKLRRLNPDAYTPRLVSFGPLHR-GKEELQAMEDQKYRYLLSFIPR 345

Query: 65  LDNKIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQH 124
            ++   SLE LV+  ++W + AR+CY E + +  ++F++M++VD   +VE L+  +  + 
Sbjct: 346 TNS---SLEDLVRLARTWEQNARSCYAEDVKLHSDEFVEMLVVDGSFLVELLLRSHYPRL 405

Query: 125 RNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHLI 170
           R  +   R + N        ++C D I +ENQ+PFFV++ +F L+
Sbjct: 406 RGEN--DRIFGNSMMIT---DVCRDMILIENQLPFFVVKEIFLLL 441

[Close]

BLAST of CmaCh05G003950.1 vs. TAIR10
Match: AT2G36430.1 (AT2G36430.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-18
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1


Query: 12  CSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKIDS 71
           CSIFRV + +   N   Y P+V+SI P+H   Q  L   E++K RY    L R  N   +
Sbjct: 45  CSIFRVPQSMIDCNGRCYEPRVVSIGPYHR-GQTQLKMIEEHKWRYLNVLLTRTQNL--T 104

Query: 72  LEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVE-FLILYYVEQHRNSSPQ 131
           LE  +K+ ++  + AR CY E I+M  E+F +MM++D C ++E F  +  +     + P 
Sbjct: 105 LEDYMKSVKNVEEVARECYSETIHMDSEEFNEMMVLDGCFLLELFRKVNNLVPFEPNDPL 164

Query: 132 TRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHL 169
               + L F+ R      D + LENQ+PFFVLE LF+L
Sbjct: 165 VAMAWVLPFFYR------DFLCLENQIPFFVLETLFNL 193

[Close]

BLAST of CmaCh05G003950.1 vs. TAIR10
Match: AT3G47210.1 (AT3G47210.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-16
Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1


Query: 10  EECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKI 69
           E C IFRV K   +MN  AY P+V+SI P+ HH +K L   +Q+KLR+   FL      +
Sbjct: 91  ESCCIFRVPKSFAEMNPEAYKPKVVSIGPY-HHGRKHLEMIQQHKLRFLHLFLRTA--SV 150

Query: 70  DSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILY--YVEQHRNS 129
           D  + L      W  E R  Y E +  S  + + MM++D C ++  L++    +E + + 
Sbjct: 151 DR-DVLFNAVVDWEDEIRKSYSEGLEGSPHELVYMMILDGCFILMLLLIVSRKIELYESE 210

Query: 130 SPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLF 167
            P     + L   Q       D + LENQVPFFVL+ LF
Sbjct: 211 DPILTIPWILPSIQS------DLLLLENQVPFFVLQTLF 239

[Close]

BLAST of CmaCh05G003950.1 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 14  IFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKIDSLE 73
           I+RV   L++ +  +Y PQ +S+ P+HH  +K L   E++K R     L RL  +I   E
Sbjct: 115 IYRVPHYLQENDKKSYFPQTVSLGPYHH-GKKRLRPMERHKWRALNKVLKRLKQRI---E 174

Query: 74  FLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQHRNSSPQTRD 133
                 +   ++AR CYE PI++S  +F +M+++D C V+E L    VE          D
Sbjct: 175 MYTNAMRELEEKARACYEGPISLSRNEFTEMLVLDGCFVLE-LFRGTVEGFTEIGYARND 234

Query: 134 YFNLYFYQR--EHEICLDSIKLENQVPFFVLECLFHL 169
                F  R   H I  D I LENQ+P FVL+ L  L
Sbjct: 235 ---PVFAMRGLMHSIQRDMIMLENQLPLFVLDRLLEL 263

[Close]

BLAST of CmaCh05G003950.1 vs. TAIR10
Match: AT5G22550.2 (AT5G22550.2 Plant protein of unknown function (DUF247))

HSP 1 Score: 74.7 bits (182), Expect = 8.8e-14
Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 1


Query: 12  CSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKD-LIATEQYKLRYCINFLNRLDNKID 71
           C I+R+   L+++N+ AY P+++SI P+HH S K  L   E++K RY   F+++      
Sbjct: 44  CCIYRIPHTLKQVNDKAYAPKIVSIGPYHHSSDKQHLKMIEEHKKRYLEMFVSKTKENGV 103

Query: 72  SLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQHRNSSPQ 131
            L  LV       ++ R+ Y E +  S +  I++ML+D C +   L+L+ V   +     
Sbjct: 104 YLIHLVDLVSGLEQKIRDSYSENLEFSQQKLIKVMLLDGCFI---LMLFLVVSQKIEYTN 163

Query: 132 TRD-YFNLYFYQREHEICLDSIKLENQVPFFVLECL 166
            +D  F L +      +  D + LENQVP F+L+ L
Sbjct: 164 LKDPIFKLRWIL--PTLRSDLLLLENQVPLFLLKVL 194

[Close]

BLAST of CmaCh05G003950.1 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 106/222 (47.75%), Postives = 144/222 (64.86%), Query Frame = 1


Query: 1   MMEQLPLVNE-ECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCI 60
           M++Q+P  +E +CSI+RV K LR+MN  AY PQ+ISI PFH+H+ K+LIA EQYKL+  I
Sbjct: 48  MLDQVPPTHENQCSIYRVPKQLREMNPKAYAPQLISIGPFHYHTHKNLIANEQYKLQGFI 107

Query: 61  NFLNRLDNKIDSLEFLVKT---------TQSWMKEARNCYEEPINMSDEDFIQMMLVDSC 120
           N+L R+  K++SLE LV+T          QSW++EARNCY E INM+DEDFI+MMLVD C
Sbjct: 108 NYLRRV-YKMESLEQLVRTKSVEDLVKRAQSWVEEARNCYAETINMNDEDFIKMMLVDGC 167

Query: 121 CVVEFLIL---YYVEQHRNSSPQTRDYFNLYFY-QREHEICLDSIKLENQVPFFVLECLF 180
            +VEF IL    Y E H +  PQ  +  ++ FY +R  +I  D IKLENQ+PFFVL+ LF
Sbjct: 168 FIVEFFILDFEEYNESHESLFPQIENNVSMSFYKERIPDIDEDLIKLENQLPFFVLQHLF 227

Query: 181 HLIPQSDDRFVHINKTLHKHCNRRWNKAK-----ASLKPNYF 204
            LIP+  D      +  +++    W +        S+KP +F
Sbjct: 228 DLIPKHKDAPNCFKQLTYEYLTMGWLENYEPSDILSIKPKHF 268

[Close]

BLAST of CmaCh05G003950.1 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 99/179 (55.31%), Postives = 124/179 (69.27%), Query Frame = 1


Query: 2   MEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINF 61
           +EQLP VN ECSI+RV KLL +MN IAY+PQVISI PFHH S KDL ATE+YKL+   NF
Sbjct: 36  LEQLPAVNTECSIYRVPKLLCQMNRIAYVPQVISIGPFHHGS-KDLNATERYKLQGLRNF 95

Query: 62  LNRLDNKI--DSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLIL- 121
           L RLD+     SLE LVK  QSW++EAR CY +PI+M D +F++MMLVD C +VEF IL 
Sbjct: 96  LRRLDDHKAEKSLEELVKIAQSWVEEARRCYADPIDMDDHEFVKMMLVDGCFIVEFFILV 155

Query: 122 --YYVEQHRNSSPQTRDYFNLYFYQR-EHEICLDSIKLENQVPFFVLECLFHLIPQSDD 175
              Y     +  PQ     +L FYQ    ++  D IKLENQ+PFF+L+ LF LIP+ ++
Sbjct: 156 HNQYTTSADHKFPQIDPNVDLLFYQGIIPDVYFDLIKLENQLPFFLLQRLFELIPKENN 213

[Close]

BLAST of CmaCh05G003950.1 vs. NCBI nr
Match: gi|700188571|gb|KGN43804.1| (hypothetical protein Csa_7G068570 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 94/178 (52.81%), Postives = 124/178 (69.66%), Query Frame = 1


Query: 2   MEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINF 61
           +EQLP+VN+EC I+RV KLL +M    Y+PQVISI PFHH S KDL ATE YKL+   NF
Sbjct: 35  LEQLPVVNKECKIYRVPKLLCQMKKTTYVPQVISIGPFHHGS-KDLNATEPYKLQGLRNF 94

Query: 62  LNRLDN-KIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYY 121
           L RLDN K  SLE LVK  +SW++EAR+CY +PI+M D +F++MMLVD C +VEF IL Y
Sbjct: 95  LRRLDNHKEKSLEELVKIARSWIEEARSCYVDPIDMDDYEFVKMMLVDGCFIVEFFILVY 154

Query: 122 VE---QHRNSSPQTRDYFNLYFYQR-EHEICLDSIKLENQVPFFVLECLFHLIPQSDD 175
            +    + +  PQ      L FYQ    ++  D +KLENQ+PFF+L+ LF L+P+ ++
Sbjct: 155 SQYTTSNDHKFPQIDPNAGLLFYQGIIPDMYFDLLKLENQLPFFILQRLFELMPKENN 211

[Close]

BLAST of CmaCh05G003950.1 vs. NCBI nr
Match: gi|700207813|gb|KGN62932.1| (hypothetical protein Csa_2G380610 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 4.1e-37
Identity = 89/184 (48.37%), Postives = 125/184 (67.93%), Query Frame = 1


Query: 1   MMEQLPLVNEECS-IFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCI 60
           M+E LP VN +C+ I++V K LR++N+ AY+PQ ISI PFH+ ++KDLIA E YKL+   
Sbjct: 28  MLEGLPRVNPKCNTIYQVPKELREINDKAYVPQFISIGPFHYRTRKDLIANEHYKLQGFF 87

Query: 61  NFLNRL-----------DNKID-SLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLV 120
           NFL R+           +N+++ S + LV+ +  W+KEA NCY EPI M DE+FI MMLV
Sbjct: 88  NFLGRISIINSHIQLLEENQVNISSKVLVEKSHDWVKEAWNCYAEPIKMKDEEFIIMMLV 147

Query: 121 DSCCVVEFLILYYVEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFH 172
           D+C +VEF +LYY   H +      +  +L++Y   +EI LD IKLENQVPFF+L+ LF 
Sbjct: 148 DACFIVEFFLLYYGSFHEDGKLFNAE-LSLFYYGVFYEILLDLIKLENQVPFFLLQNLFD 207

[Close]

BLAST of CmaCh05G003950.1 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 93/199 (46.73%), Postives = 126/199 (63.32%), Query Frame = 1


Query: 6   PLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRL 65
           P +  +CSI+RV K  R+MN  AY+PQ ISI PF++H+ ++L A EQYK +  INFL R+
Sbjct: 48  PALKNQCSIYRVPKQQREMNPKAYVPQHISIGPFYYHADENLRANEQYKFQSVINFLRRV 107

Query: 66  DNKIDSLEFL---------VKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFL 125
             KI+SLE L         VK  QSW+KEARNCY E I+M+DEDFI+MML+D C +VEF 
Sbjct: 108 -YKIESLEQLLQTRSLEDLVKKAQSWVKEARNCYAESIDMNDEDFIKMMLMDGCFIVEFF 167

Query: 126 ILYYVE---QHRNSSPQTRDYFNLYFY-QREHEICLDSIKLENQVPFFVLECLFHLIPQS 185
           IL Y E      +  P+  +  ++ FY +R  +I  D IKLENQ+PFF+L+ L+ LIP+ 
Sbjct: 168 ILDYEEYKMPDESFFPKIENNVSMSFYKERIPDIDDDLIKLENQLPFFILQHLYDLIPKQ 227

Query: 186 DDRFVHINKTLHKHCNRRW 192
           DD      +   K+    W
Sbjct: 228 DDNPKCFKELTCKYLKMGW 245

The following BLAST results are available for this feature:

BLAST of CmaCh05G003950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3720_ARATH	8.5e-11	31.85	UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1	[more]

BLAST of CmaCh05G003950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4A0_CUCSA	1.0e-39	52.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068570 PE=4 SV=1	[more]
A0A0A0LQ57_CUCSA	2.8e-37	48.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1	[more]
A0A0A0LLX1_CUCSA	1.4e-36	46.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]
A0A0A0LQ64_CUCSA	3.2e-33	46.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1	[more]
A0A0A0LM96_CUCSA	4.7e-32	42.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]

BLAST of CmaCh05G003950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31980.1	7.4e-21	32.73	unknown protein	[more]
AT2G36430.1	4.5e-18	37.34	Plant protein of unknown function (DUF247)	[more]
AT3G47210.1	1.9e-16	35.22	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	3.9e-14	35.03	Plant protein of unknown function (DUF247)	[more]
AT5G22550.2	8.8e-14	31.41	Plant protein of unknown function (DUF247)	[more]

BLAST of CmaCh05G003950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088838\|ref\|XP_008445188.1\|	2.1e-41	47.75	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|659088834\|ref\|XP_008445186.1\|	3.6e-41	55.31	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]
gi\|700188571\|gb\|KGN43804.1\|	1.5e-39	52.81	hypothetical protein Csa_7G068570 [Cucumis sativus]	[more]
gi\|700207813\|gb\|KGN62932.1\|	4.1e-37	48.37	hypothetical protein Csa_2G380610 [Cucumis sativus]	[more]
gi\|778674379\|ref\|XP_011650197.1\|	2.0e-36	46.73	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G003950	CmaCh05G003950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003950.1	CmaCh05G003950.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003950.1.exon.1	CmaCh05G003950.1.exon.1	exon
CmaCh05G003950.1.exon.2	CmaCh05G003950.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003950.1.CDS.1	CmaCh05G003950.1.CDS.1	CDS
CmaCh05G003950.1.CDS.2	CmaCh05G003950.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 14..169 score: 2.1
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..191 score: 2.4