CmaCh05G003580.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G003580.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ethylene-responsive transcription factor
Location	Cma_Chr05 : 1604135 .. 1604999 (-)
Sequence length	792

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTCCGCTCACCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGTAAGTCCATTCTCCTAGCTTTAAACTAAGTCCATTCGCCATCCTTTTTGTTCACTGATTTTTGTTCATACAGGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCAAGGGCGCGCACTAACTTCCCTTACGACGCCTCCCTGTCGCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCCTCCTTGCAACTCACCAAGCAATCCTCCTCTGCTGCACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAGCCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGGGAGCCGTTGGATGATGATCATATTCAACAAATGATCGAGGAGCTCCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGCCTGCAGGCTCAGCCCATTTGACATTCAACTATAGATCTCCGCCTCTAATTATGTACAAAATATGAATTAATTTAGCTAATTTAATTAACTACCCGACTTTTGATCATTTGAGGTCATTATTTCCTCTTGGCCAACCCAGATTTGTTTCTCTCTGGTTTGGCCAATTGAGTGGCGGCGCCCCCATTTTATTTCATGTACTATTTTCCAAATCCCTTTATATTACATAATTAGTATGAAATCCTTATAATTTCATTTCCCC

mRNA sequence

TGTCTCCGCTCACCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCAAGGGCGCGCACTAACTTCCCTTACGACGCCTCCCTGTCGCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCCTCCTTGCAACTCACCAAGCAATCCTCCTCTGCTGCACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAGCCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGGGAGCCGTTGGATGATGATCATATTCAACAAATGATCGAGGAGCTCCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGCCTGCAGGCTCAGCCCATTTGACATTCAACTATAGATCTCCGCCTCTAATTATGTACAAAATATGAATTAATTTAGCTAATTTAATTAACTACCCGACTTTTGATCATTTGAGGTCATTATTTCCTCTTGGCCAACCCAGATTTGTTTCTCTCTGGTTTGGCCAATTGAGTGGCGGCGCCCCCATTTTATTTCATGTACTATTTTCCAAATCCCTTTATATTACATAATTAGTATGAAATCCTTATAATTTCATTTCCCC

Coding sequence (CDS)

ATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCAAGGGCGCGCACTAACTTCCCTTACGACGCCTCCCTGTCGCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCCTCCTTGCAACTCACCAAGCAATCCTCCTCTGCTGCACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAGCCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGGGAGCCGTTGGATGATGATCATATTCAACAAATGATCGAGGAGCTCCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGCCTGCAGGCTCAGCCCATTTGA

Protein sequence

MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTSGIAPVGVEADVTSTKKVKLESVDRGEPLDDDHIQQMIEELLDYGGIELRSAAGLQAQPI

Homology

[Close]

BLAST of CmaCh05G003580.1 vs. Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.2e-55
Identity = 117/182 (64.29%), Postives = 137/182 (75.27%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+ +   + QT T R+  + + 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQT---QTQTQTARSQSADSD 120

Query: 121 GIA--PVGVEADVTSTKKVKLESVDRG-----EPLDDDHIQQMIEELLDYGGIELRSAAG 176
           G+      +   VT T ++K E  +        PL++DHI+QMIEELL YG IEL S   
Sbjct: 121 GVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 179

[Close]

BLAST of CmaCh05G003580.1 vs. Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 98/170 (57.65%), Postives = 118/170 (69.41%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAARLMCG RAR
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S+SSSS+LLSATL AKLHRCYMASLQ+T+ SS        +  R   S  +
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLIAKLHRCYMASLQMTRPSS------LPEAPRIIASPNN 120

Query: 121 GIAPVGVEADV---------------TSTKKVKLESVDRGEPLDDDHIQQ 156
            +  +G +A +                  KKVK+E   + +PL++DHI Q
Sbjct: 121 AVKGIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164

[Close]

BLAST of CmaCh05G003580.1 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 83/194 (42.78%), Postives = 110/194 (56.70%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  D-----------------ASLSRSSSSRLLSATLTAKLHRC------YMASLQLTKQSSS 125
           +                 +++S S+SS  LS+ L+AKL +C       +  L+L   SS 
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124

Query: 126 AARRPQTDTIRTDFS--VTSGIAPVGVEADVTS----------TKKVKLESVDRGEPLDD 163
                +    ++D S  +T  + P     + TS          T +V++    R E LD+
Sbjct: 125 IGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGG-SREEVLDE 184

[Close]

BLAST of CmaCh05G003580.1 vs. Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-22
Identity = 77/177 (43.50%), Postives = 100/177 (56.50%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSAARRPQTDT 125
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 126 IRTDFSVTSGIAPVGVEADV-----TSTKKVKLESVDRGEPLDDDHIQQMIEELLDY 164
            +T  +    +  +G + +        T K+K+ + D  E  DD    QMIEELL++
Sbjct: 125 SKTSPNWVK-LVELGDKVNARPGGDIETNKMKVRNEDVQE--DDQMAMQMIEELLNW 178

[Close]

BLAST of CmaCh05G003580.1 vs. Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-21
Identity = 76/184 (41.30%), Postives = 100/184 (54.35%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66  DASLSRSS----------SSRLLSATLTAKLHRC------YMASLQLTKQSSSAA---RR 125
             S   S           S + LS  L AKL +        +  L+L   SS      +R
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124

Query: 126 PQTDTIRT---DFSVTSGIAPVGVEADVTSTKKVKLESVDRGEPL---DDDHI-QQMIEE 164
             + T  T      + + +    V+  +T+  K  +E  +  E     D+D +  +MIEE
Sbjct: 125 AGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAMEMIEE 184

[Close]

BLAST of CmaCh05G003580.1 vs. TrEMBL
Match: A0A0A0LSL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382540 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-77
Identity = 156/175 (89.14%), Postives = 160/175 (91.43%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQSSSAARRPQTD IRTDFSV S
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 121 GIAPV-GVEADVTSTKKVKLESVDRGEP-----LDDDHIQQMIEELLDYGGIELR 170
           GIAPV  VE D  + KKVK+ESVD  EP     LDDDHIQQMIEELLDYGGIELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of CmaCh05G003580.1 vs. TrEMBL
Match: F6H3U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-57
Identity = 124/185 (67.03%), Postives = 143/185 (77.30%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S+SSSS+LLSATLTAKLHRCYMASLQLTKQS    ++P T  + T  S+  
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAG 120

Query: 121 GIA----------PVGVEADVTS--TKKVKLES-VDRGEPLDDDHIQQMIEELLDYGGIE 173
            +           PV V+    +   KKV+++S   + +PL+DDHIQQMIEELLDYG IE
Sbjct: 121 KVGESGQWSPEKRPVTVQQPEANWVVKKVQVDSNTQQFKPLEDDHIQQMIEELLDYGSIE 180

[Close]

BLAST of CmaCh05G003580.1 vs. TrEMBL
Match: A0A067FJG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.4e-55
Identity = 125/194 (64.43%), Postives = 141/194 (72.68%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ     +  S  S
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQ-KAPASHVSTPS 120

Query: 121 GIA--------------PVGVEADV----TSTKKVKLESVDRGEPLDDDHIQQMIEELLD 177
           G A              P+ V+        + KK ++E   + +PL+DDHI+QMIEELLD
Sbjct: 121 GNATRINEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLD 180

[Close]

BLAST of CmaCh05G003580.1 vs. TrEMBL
Match: V4UBY1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.4e-55
Identity = 125/194 (64.43%), Postives = 141/194 (72.68%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ     +  S  S
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQ-KAPASHVSTPS 120

Query: 121 GIA--------------PVGVEADV----TSTKKVKLESVDRGEPLDDDHIQQMIEELLD 177
           G A              P+ V+        + KK ++E   + +PL+DDHI+QMIEELLD
Sbjct: 121 GNATRVNEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLD 180

[Close]

BLAST of CmaCh05G003580.1 vs. TrEMBL
Match: A0A0M3SU38_9ROSA (AP2/EREBP family transcription factor-like protein 19 OS=Prunus pseudocerasus PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 123/194 (63.40%), Postives = 140/194 (72.16%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S+SS+S+LLSATLTAKLHRCYMASLQ+TK S    ++PQ   + T      
Sbjct: 61  TNFPYNPNASQSSASKLLSATLTAKLHRCYMASLQMTKTSLQEPKKPQPCFVDTKNDNAE 120

Query: 121 GIAPVGV--------------EADVTST---KKVKLESVDRG-EPLDDDHIQQMIEELLD 177
               +G+              E + T      KVK+ES  +  +PL+DDHI+QMIEELL 
Sbjct: 121 KAIELGMNFPEKKPETHHEQEEPEETMNWVFSKVKVESSQQQFKPLEDDHIEQMIEELLH 180

[Close]

BLAST of CmaCh05G003580.1 vs. TAIR10
Match: AT5G25190.1 (AT5G25190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 117/182 (64.29%), Postives = 137/182 (75.27%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ +   +SSS+LLSATLTAKLH+CYMASLQ+TKQ+ +   + QT T R+  + + 
Sbjct: 61  TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQT---QTQTQTARSQSADSD 120

Query: 121 GIA--PVGVEADVTSTKKVKLESVDRG-----EPLDDDHIQQMIEELLDYGGIELRSAAG 176
           G+      +   VT T ++K E  +        PL++DHI+QMIEELL YG IEL S   
Sbjct: 121 GVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLP 179

[Close]

BLAST of CmaCh05G003580.1 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 83/194 (42.78%), Postives = 110/194 (56.70%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  D-----------------ASLSRSSSSRLLSATLTAKLHRC------YMASLQLTKQSSS 125
           +                 +++S S+SS  LS+ L+AKL +C       +  L+L   SS 
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124

Query: 126 AARRPQTDTIRTDFS--VTSGIAPVGVEADVTS----------TKKVKLESVDRGEPLDD 163
                +    ++D S  +T  + P     + TS          T +V++    R E LD+
Sbjct: 125 IGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGG-SREEVLDE 184

[Close]

BLAST of CmaCh05G003580.1 vs. TAIR10
Match: AT5G25390.2 (AT5G25390.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-23
Identity = 77/177 (43.50%), Postives = 100/177 (56.50%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  DASLSRSS--------SSRLLSATLTAKLHR-C-----YMASLQLTKQSSSAARRPQTDT 125
             S   +S        S + LS  L AKL + C     Y+  L+L   SS      +   
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 126 IRTDFSVTSGIAPVGVEADV-----TSTKKVKLESVDRGEPLDDDHIQQMIEELLDY 164
            +T  +    +  +G + +        T K+K+ + D  E  DD    QMIEELL++
Sbjct: 125 SKTSPNWVK-LVELGDKVNARPGGDIETNKMKVRNEDVQE--DDQMAMQMIEELLNW 178

[Close]

BLAST of CmaCh05G003580.1 vs. TAIR10
Match: AT5G11190.1 (AT5G11190.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-22
Identity = 76/184 (41.30%), Postives = 100/184 (54.35%), Query Frame = 1


Query: 6   QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65
           ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66  DASLSRSS----------SSRLLSATLTAKLHRC------YMASLQLTKQSSSAA---RR 125
             S   S           S + LS  L AKL +        +  L+L   SS      +R
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKR 124

Query: 126 PQTDTIRT---DFSVTSGIAPVGVEADVTSTKKVKLESVDRGEPL---DDDHI-QQMIEE 164
             + T  T      + + +    V+  +T+  K  +E  +  E     D+D +  +MIEE
Sbjct: 125 AGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAMEMIEE 184

[Close]

BLAST of CmaCh05G003580.1 vs. TAIR10
Match: AT1G50640.1 (AT1G50640.1 ethylene responsive element binding factor 3)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-18
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 7  RFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYD 66
          RFRGVR+R WG + +EIR P  K R+WLGTF++AE+AARAYD AAR + GP+A+TNFP D
Sbjct: 27 RFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86

Query: 67 AS 69
          +S
Sbjct: 87 SS 88

[Close]

BLAST of CmaCh05G003580.1 vs. NCBI nr
Match: gi|659088962|ref|XP_008445253.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 159/175 (90.86%), Postives = 161/175 (92.00%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 41  MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 100

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTD IRTDFSV S
Sbjct: 101 TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDVIRTDFSVAS 160

Query: 121 GIAP-VGVEADVTSTKKVKLESVDRGEP-----LDDDHIQQMIEELLDYGGIELR 170
           GIAP   VE D T+ KKVK+ESVD GEP     LDDDHIQQMIEELLDYGGIELR
Sbjct: 161 GIAPGERVEVDGTTAKKVKMESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELR 215

[Close]

BLAST of CmaCh05G003580.1 vs. NCBI nr
Match: gi|449441876|ref|XP_004138708.1| (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 156/175 (89.14%), Postives = 160/175 (91.43%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPYDASLSRSSSSRLLSATLTAKLHRCY+AS+QLTKQSSSAARRPQTD IRTDFSV S
Sbjct: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVAS 120

Query: 121 GIAPV-GVEADVTSTKKVKLESVDRGEP-----LDDDHIQQMIEELLDYGGIELR 170
           GIAPV  VE D  + KKVK+ESVD  EP     LDDDHIQQMIEELLDYGGIELR
Sbjct: 121 GIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR 175

[Close]

BLAST of CmaCh05G003580.1 vs. NCBI nr
Match: gi|225430392|ref|XP_002285373.1| (PREDICTED: protein PPLZ02 [Vitis vinifera])

HSP 1 Score: 230.3 bits (586), Expect = 2.6e-57
Identity = 124/185 (67.03%), Postives = 143/185 (77.30%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S+SSSS+LLSATLTAKLHRCYMASLQLTKQS    ++P T  + T  S+  
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAG 120

Query: 121 GIA----------PVGVEADVTS--TKKVKLES-VDRGEPLDDDHIQQMIEELLDYGGIE 173
            +           PV V+    +   KKV+++S   + +PL+DDHIQQMIEELLDYG IE
Sbjct: 121 KVGESGQWSPEKRPVTVQQPEANWVVKKVQVDSNTQQFKPLEDDHIQQMIEELLDYGSIE 180

[Close]

BLAST of CmaCh05G003580.1 vs. NCBI nr
Match: gi|296082087|emb|CBI21092.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 118/172 (68.60%), Postives = 130/172 (75.58%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S+SSSS+LLSATLTAKLHRCYMASLQLTKQS    ++P T  + T  S+  
Sbjct: 61  TNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIA- 120

Query: 121 GIAPVGVEADVTSTKKVKLESVDRGEPLDDDHIQQMIEELLDYGGIELRSAA 173
                                   G+PL+DDHIQQMIEELLDYG IEL S +
Sbjct: 121 ------------------------GKPLEDDHIQQMIEELLDYGSIELCSGS 147

[Close]

BLAST of CmaCh05G003580.1 vs. NCBI nr
Match: gi|567916622|ref|XP_006450317.1| (hypothetical protein CICLE_v10009593mg [Citrus clementina])

HSP 1 Score: 221.9 bits (564), Expect = 9.2e-55
Identity = 125/194 (64.43%), Postives = 141/194 (72.68%), Query Frame = 1


Query: 1   MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTS 120
           TNFPY+ + S SSSS+LLSATLTAKLHRCYMASLQ+TK  SSAA  PQ     +  S  S
Sbjct: 61  TNFPYNPNASHSSSSKLLSATLTAKLHRCYMASLQMTK--SSAANEPQ-KAPASHVSTPS 120

Query: 121 GIA--------------PVGVEADV----TSTKKVKLESVDRGEPLDDDHIQQMIEELLD 177
           G A              P+ V+        + KK ++E   + +PL+DDHI+QMIEELLD
Sbjct: 121 GNATRVNEMGKHLLEMRPMQVQGSTEPINRAVKKEQVEIAQQFKPLEDDHIEQMIEELLD 180

The following BLAST results are available for this feature:

BLAST of CmaCh05G003580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF03_ARATH	3.2e-55	64.29	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF00...	[more]
PZ02_LUPPO	1.2e-43	57.65	Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1	[more]
WIN1_ARATH	4.5e-25	42.78	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE...	[more]
SHN3_ARATH	3.5e-22	43.50	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3...	[more]
SHN2_ARATH	5.1e-21	41.30	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2...	[more]

BLAST of CmaCh05G003580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSL8_CUCSA	1.6e-77	89.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382540 PE=4 SV=1	[more]
F6H3U5_VITVI	1.8e-57	67.03	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06000 PE=4 SV=...	[more]
A0A067FJG7_CITSI	6.4e-55	64.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029507mg PE=4 SV=1	[more]
V4UBY1_9ROSI	6.4e-55	64.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009593mg PE=4 SV=1	[more]
A0A0M3SU38_9ROSA	3.2e-54	63.40	AP2/EREBP family transcription factor-like protein 19 OS=Prunus pseudocerasus PE...	[more]

BLAST of CmaCh05G003580.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25190.1	1.8e-56	64.29	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.5e-26	42.78	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	2.0e-23	43.50	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	2.9e-22	41.30	Integrase-type DNA-binding superfamily protein	[more]
AT1G50640.1	1.5e-18	64.52	ethylene responsive element binding factor 3	[more]

BLAST of CmaCh05G003580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088962\|ref\|XP_008445253.1\|	1.2e-78	90.86	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
gi\|449441876\|ref\|XP_004138708.1\|	2.3e-77	89.14	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis sativus...	[more]
gi\|225430392\|ref\|XP_002285373.1\|	2.6e-57	67.03	PREDICTED: protein PPLZ02 [Vitis vinifera]	[more]
gi\|296082087\|emb\|CBI21092.3\|	1.4e-55	68.60	unnamed protein product [Vitis vinifera]	[more]
gi\|567916622\|ref\|XP_006450317.1\|	9.2e-55	64.43	hypothetical protein CICLE_v10009593mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G003580	CmaCh05G003580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003580.1	CmaCh05G003580.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003580.1.three_prime_UTR.1	CmaCh05G003580.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003580.1.CDS.2	CmaCh05G003580.1.CDS.2	CDS
CmaCh05G003580.1.CDS.1	CmaCh05G003580.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003580.1.five_prime_UTR.1	CmaCh05G003580.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003580.1.exon.2	CmaCh05G003580.1.exon.2	exon
CmaCh05G003580.1.exon.1	CmaCh05G003580.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 30..46 score: 9.2E-11coord: 8..19 score: 9.2
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 7..64 score: 8.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..56 score: 6.2
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..70 score: 2.0
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 7..64 score: 20
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 7..66 score: 1.05
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..170 score: 5.3
None	No IPR available	PANTHER	PTHR31194:SF4	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003	coord: 1..170 score: 5.3