CmaCh04G018670.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G018670.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPeptide chain release factor, putative
LocationCma_Chr04 : 9498763 .. 9503019 (+)
Sequence length1683
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCCATCGACCAACTGTGCGGCTTCTTGAACAAATCCGAACACTTGCCTTACATTGCCGCACGAATCCTGCGCAAATCTGTACAAATCCGTTGCTTCCGCCACCATCCGACCTTCTTTCTACTCCGTCTGTTCGTTTCTATTCCAAAGGTTCTTATCTTTCTTCCCTTTTTTCAATCCTTTTCTTTGTTTTCTTCGTTATCACGGCTTTGGCTCAGACACGGATTTATTGGGTTAGGTCTCTTCCACATTTTACATTGGATGCTGTGGATTACTTCTTCATTTGAATTATGAAATGTAGAATTGAGTTCTGTATTATTTATTGGCTATTACCTTTTGAATGAAATCTTTGTTTGTATCTTTCGATGCTTGGCCTCCTATAATCTGAACATCTCTTCAAACTTGTTTAAAATAGGCGAAGTACAAACGCAACAGCTATCAATGGAGCTTATCAAGATAATGGAACAAAGGTTGAGGGCCATTGAGCTCAGGAGCACTTTTCTTCTGAATATAATCAACCGGGTACCACTTATTCTCACTTTTTTATGCCCTCTCCTTTGCTGTACAGACATCACGCAGCTTCAGAATTTTGTTTAAGTTAACATATTAAAAGTTGTACAACAAATCGAATGAGATAAAATATGATCTTATGAAACTTCATAATATCCATATTCTACCTTAGCCTTCCCGCCTAGAAGCTGTAATTCTCACACATTTGGAAGATAAATAGGTTTGGAGATTAGACAGCAGTGACACATTCACAACCAATTCTTTCCTCCTTGACTAAAACATTATTGCTGAAGAGAAACAACCCTTTTACTATCGTATTCAATTTGGATAGACCCATATTTTGTAACGGCCCAAGCCCACCGCTAACAAATATTGTCTCTTTGAGCTTTTCCTTTCGGGTAGTTTCTTTCTCTTCCCCAACCAATGTAGGATCTCACAATCCACCCTTTCAGGGCCCAATATCCTCACTAGCACTCTTTCCATTCTTCAATCGATGTGGGATCCCCAATCCACCCCCTTACTAGCACACCGCCTTGTGTCCACCTTCCTTTGGGGCTCAGCCTCCTTGCTGGCACATCACCCGGTGTCTGGCTCGGATACCATTTGTAACGGTCCAAGCCCACCGCTAATAGATATTGTCCTCTTTGAGCTTTCCCTTTCGGGTTTCCTCTCAAGGTTTTTAAAACATGTCTGTTAGGGAGAGGTTTCCACCCCTTATAAAGGATGTTTTGTTCTCCTCTCCAACCGACGTGGGATGTCACATATTCTTTCTTTGGAAGCTTGCTCATAATGTTGCAATACCCATGACCTCTTACAGCAGCCTATGCCATATTCATCAATCTCGCTTCAATGCAAGAATGAAGCTGAATCTCAGTCACAAGACTTGCTTTCTCGCTCTTTGGAATGATATGCTCTCTTCCTTTGGTTGGTCACTGGCTTTACGACGTAATCTCAAGGGTTTCCTCTTATTCCTCTCCCAGAACACCCCTTCTGAAAGGAGAAGAAAACCCTTTAGATAAACATAATTAGAGCTTTCTTTTGGGCAATTTGGATTTAAAGGAATCATTGGCTTCTTTTCGAGAAAGAACCTTGCAGCTGGATTCTTCAGAAAATAGTTGTCTTAGCTATCTCGTAGTATAAATTTTCTTTCTTCTTAATTCTCGTAGTTATGTCTCTCTTTGTTCAGCAAATTTTTTCTTATCATAAAAGGAAAATAATCAAATAAATATAGAAAATTTTAGCTTTCCAACCCTTCCTACTCTTCCTTTTCTCCGGTATCCCTTTCTCTTATAATTACAGACCTTAAATGATGATTTAATTTTCTTTACTCATGGTGTTATTTGAACATAGCCAGAAGCCCCACCGTCCGAGTATGCAAAGGCTAACAAGGAGCTTAAGAAACTCAGAGATACGATGGATCTAATAAATGAGTTGAGGTCTAGACAGAAGGTATGAAATACATTCAACACAGTATCTTTATTTACAATATGAACTGCTTAAGATGTTATCTATGAAAAGGTTAAGAGATGACTGAATTATTTCCTTTCGGTGCAAAGACGACCTCTGTTCATGCTGTTCTTTCACAATCATCTACTAATTTGCTGTTTCTTTGACTTGGTTGTTCAAACTCCAAAATGTTCTGAATACAACTTGTGTGGGTGTTTTTGTTTTACAATGAGATTGTAGACGCCTATCGGAATTCTTGTAAGTGGACTGACTTGGAGGCATCCGCTTCCCCAATGAATGAAATGTGTGTTGTTGCCGTACTATTTACAGAAGGATATCAGAAATTTTTTACGACTGTTTTGGCTGTAGGAAATTAATGGTTTGAGAACGCTGATGGACGAATGCCCAGAGGATAAAGATATGCTTGATATGGCTACGGAGGAATTAAATCAGGCAGTTGAAGAAGAGAAAAGATTACAGCACTCATTGCTCACGTCGTTACTTCCTAGAGATGATGCTGATGAGAGGGGTTGCATCTTGGAGGTGAGAGCAGGTAGGTAATGGTGCATATTAGTGAACGTAGCCATTAATGAGGTTTTTTTTTTTTTTTTTTGTTGAGAATAGGAATTTTTCTGTTCTCTTTTTCTCCGTTTCCGATCTCGATAGTTATAACTAATAGAAAGTTTTACCAGGAACTGGTGGAGAAGAAGCTTCTTTGTTTGCCATGGATATATTCAAAATGTGAGTGACAGTTTGCATAGCATGCTTAGTATCACTGCTTAGTTCTCAAGAGTTATTTACTTCGGATCAAAATAGGTATGAGCGATACGCACAGAAGAAAGGTTGGAAGTTTGAGGTGGTTGACATAACAGAATCGGATCTTAAAGGATATAAGGTGAATTCATTAGCAAATTTTTTAGTTCAACAATGTATGGGGTAAAAGATTCGAACCTTTGACCTAGAGTATATGTTTAATTTCTTCGAAGATAAATACAGGATTTATCATCCTACTTTGTAGGAAGCGGTTGCTGCAATATCAGGAGCCGGTGTGTATGGGAAACTTAAATTTGAGAGTGGAATTCACCGAGTACAGGTCTTCTCTCAACATGCATATCAATAGCCTTTAGCATTTTTACCATTGTGAAATGATAATTGAAACCATTCTCTTCCTTGGGCAGCGAGTTCCTGTGACAGAGAAGTCTGGGCGTGTTCATACCAGTGCTGTTTCTGTAGCCATTCTCCCTCAAGCAGACGAGGTTCCAACCCTTCTCGCTTGACGCTTTGAAGCCACTTTCTTCCTAGAAAATTAATATCCATAGTAATTTAGGCAAGGGATTGATTCTAAGTTTGGTTGTGATATTGTTGAGGGAATGTGCAGGTAGATGTTGAGTTGAAGAACGAGGACCTGAGAATAGATACATTCAGATCAGGCGGTTCAGGAGGTCAGCATGCAAATACCACAAATAGTGCCGTTAGAGTGACTCACATTCCAACTGGGTTGACTGTGTCCATACAAGACGAGCGATCCCAACATATGGTAGGAACAGTTTCGTTTCTATTGCTTGTATGATTTTGATGGGGTATTTCTGTTTGGTTTAACTTGTTTGAGTGTGCTTTCTTTGGTTCAAACAGAACAAGGCAAAGGCGCTTAAAGTTATATGTGCAAAGCTATACGAAATTGAAAGACGCAGGATTCAGAGCAGTCGGTCAAAGCTTCGATCGGAACAGGTAATAAGAAAGAGATTGATGTATGATGTTTATGGTTACTGTGTTGAAAGAAAATACTAAAGGAAGTGAGTTTGGATTATAAAAAGCAGATTGGTAGCGGGGACAGATCGGAACGCATTCGCACATACAACTTCCCGCAAGGGCGGGTAACAGACCATCGGGTAGGCATTACAGAGCATGCCATTGAGGAGGTGATGCAGGGACAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGCAGCAGGAAATGGATGCAATTGCATCCTTCACTTCCTCTTCTTCGTAGTGGCTGTGGTAGTGAAGAGGAGGAGCATTGCATCAAATAGGATCTGCCCACTTCGCATTAGATTCAGGTAACATAAGAAATGTGTTTCTTACAGAAGTACAATACAAGTAGAATGGGTGGGTTACAATACAACTTTAAAGGGATTAAATTTCATATATGTTACAATGATGAGTAGTATGTAGGAGTTCGTTTCTGTTCGATACAACATAATTGTAACAGTTCAGACCCACCGCTAGTAGATATTGTCCTCTTTGGATTTTCCCTTTCATAAAACATACTTTT

mRNA sequence

ATGAGAATCCATCGACCAACTGTGCGGCTTCTTGAACAAATCCGAACACTTGCCTTACATTGCCGCACGAATCCTGCGCAAATCTGTACAAATCCGTTGCTTCCGCCACCATCCGACCTTCTTTCTACTCCGTCTGTTCGTTTCTATTCCAAAGGCGAAGTACAAACGCAACAGCTATCAATGGAGCTTATCAAGATAATGGAACAAAGGTTGAGGGCCATTGAGCTCAGGAGCACTTTTCTTCTGAATATAATCAACCGGCCAGAAGCCCCACCGTCCGAGTATGCAAAGGCTAACAAGGAGCTTAAGAAACTCAGAGATACGATGGATCTAATAAATGAGTTGAGGTCTAGACAGAAGGAAATTAATGGTTTGAGAACGCTGATGGACGAATGCCCAGAGGATAAAGATATGCTTGATATGGCTACGGAGGAATTAAATCAGGCAGTTGAAGAAGAGAAAAGATTACAGCACTCATTGCTCACGTCGTTACTTCCTAGAGATGATGCTGATGAGAGGGGTTGCATCTTGGAGGTGAGAGCAGGAACTGGTGGAGAAGAAGCTTCTTTGTTTGCCATGGATATATTCAAAATGTATGAGCGATACGCACAGAAGAAAGGTTGGAAGTTTGAGGTGGTTGACATAACAGAATCGGATCTTAAAGGATATAAGGTGAATTCATTAGCAAATTTTTTAGTTCAACAATGTATGGGGTAAAAGATTCGAACCTTTGACCTAGAGTATATGTTTAATTTCTTCGAAGATAAATACAGGATTTATCATCCTACTTTGTAGGAAGCGGTTGCTGCAATATCAGGAGCCGGTGTGTATGGGAAACTTAAATTTGAGAGTGGAATTCACCGAGTACAGCGAGTTCCTGTGACAGAGAAGTCTGGGCGTGTTCATACCAGTGCTGTTTCTGTAGCCATTCTCCCTCAAGCAGACGAGGTAGATGTTGAGTTGAAGAACGAGGACCTGAGAATAGATACATTCAGATCAGGCGGTTCAGGAGGTCAGCATGCAAATACCACAAATAGTGCCGTTAGAGTGACTCACATTCCAACTGGGTTGACTGTGTCCATACAAGACGAGCGATCCCAACATATGAACAAGGCAAAGGCGCTTAAAGTTATATGTGCAAAGCTATACGAAATTGAAAGACGCAGGATTCAGAGCAGTCGGTCAAAGCTTCGATCGGAACAGATTGGTAGCGGGGACAGATCGGAACGCATTCGCACATACAACTTCCCGCAAGGGCGGGTAACAGACCATCGGGTAGGCATTACAGAGCATGCCATTGAGGAGGTGATGCAGGGACAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGCAGCAGGAAATGGATGCAATTGCATCCTTCACTTCCTCTTCTTCGTAGTGGCTGTGGTAGTGAAGAGGAGGAGCATTGCATCAAATAGGATCTGCCCACTTCGCATTAGATTCAGGTAACATAAGAAATGTGTTTCTTACAGAAGTACAATACAAGTAGAATGGGTGGGTTACAATACAACTTTAAAGGGATTAAATTTCATATATGTTACAATGATGAGTAGTATGTAGGAGTTCGTTTCTGTTCGATACAACATAATTGTAACAGTTCAGACCCACCGCTAGTAGATATTGTCCTCTTTGGATTTTCCCTTTCATAAAACATACTTTT

Coding sequence (CDS)

ATGAGAATCCATCGACCAACTGTGCGGCTTCTTGAACAAATCCGAACACTTGCCTTACATTGCCGCACGAATCCTGCGCAAATCTGTACAAATCCGTTGCTTCCGCCACCATCCGACCTTCTTTCTACTCCGTCTGTTCGTTTCTATTCCAAAGGCGAAGTACAAACGCAACAGCTATCAATGGAGCTTATCAAGATAATGGAACAAAGGTTGAGGGCCATTGAGCTCAGGAGCACTTTTCTTCTGAATATAATCAACCGGCCAGAAGCCCCACCGTCCGAGTATGCAAAGGCTAACAAGGAGCTTAAGAAACTCAGAGATACGATGGATCTAATAAATGAGTTGAGGTCTAGACAGAAGGAAATTAATGGTTTGAGAACGCTGATGGACGAATGCCCAGAGGATAAAGATATGCTTGATATGGCTACGGAGGAATTAAATCAGGCAGTTGAAGAAGAGAAAAGATTACAGCACTCATTGCTCACGTCGTTACTTCCTAGAGATGATGCTGATGAGAGGGGTTGCATCTTGGAGGTGAGAGCAGGAACTGGTGGAGAAGAAGCTTCTTTGTTTGCCATGGATATATTCAAAATGTATGAGCGATACGCACAGAAGAAAGGTTGGAAGTTTGAGGTGGTTGACATAACAGAATCGGATCTTAAAGGATATAAGGTGAATTCATTAGCAAATTTTTTAGTTCAACAATGTATGGGGTAA

Protein sequence

MRIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLSMELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLANFLVQQCMG
Homology
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BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match: RF1_RHORT (Peptide chain release factor 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=prfA PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-26
Identity = 66/163 (40.49%), Postives = 101/163 (61.96%), Query Frame = 1 

Query: 67  MEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKEINGLR 126
           +E+ L  +  R   L  +++        + + ++EL  L   ++ I  L   + E+ G R
Sbjct: 3   LEENLSRVVARHDELRALLSTSAGGGEGFVRMSRELADLAPVVEAIGRLDDAKAELAGAR 62

Query: 127 TLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRAGTGGE 186
            L+D    D DM D+A EE+ +   E   L+H +   LLPRD+AD+RG ILEVRAGTGG+
Sbjct: 63  ALLD----DPDMRDLAREEVLRLEAEIPALEHGVKLLLLPRDEADDRGVILEVRAGTGGD 122

Query: 187 EASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           EA+LFA D+ +MYERYAQ++GW+FEV++ +++D+ G K  S A
Sbjct: 123 EAALFAGDLLRMYERYAQERGWRFEVMEASDTDIGGIKEASAA 161

[Close]
BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match: RF1_METSB (Peptide chain release factor 1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=prfA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-25
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = 1 

Query: 92  PSEYAKANKELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVE 151
           P+ Y + ++E   L      I + RS+ +E+ GL  ++ +   D +M  +A EEL  A E
Sbjct: 27  PALYVQLSREFAGLEQVAAAIRDYRSQMQEVEGLAAMLADPTTDSEMRGLAEEELRDAKE 86

Query: 152 EEKRLQHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFE 211
             + L+H L  +LLP+D ADER  ILEVRAGTGG+EA+LFA D+F+MY+RYA+ KGW  E
Sbjct: 87  RLEALEHQLKIALLPKDAADERSAILEVRAGTGGDEAALFAGDLFRMYQRYAESKGWSVE 146

Query: 212 VVDITESDLKGYK 225
           ++   E    G+K
Sbjct: 147 IISANEGAAGGFK 159

[Close]
BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match: RF1_AQUAE (Peptide chain release factor 1 OS=Aquifex aeolicus (strain VF5) GN=prfA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-25
Identity = 61/157 (38.85%), Postives = 99/157 (63.06%), Query Frame = 1 

Query: 70  RLRAIELRSTFLLNIINRPEA--PPSEYAKANKELKKLRDTMDLINELRSRQKEINGLRT 129
           RL  ++ +   L   +++PE      +Y K +KELK+L++  +L    +  QKE+   + 
Sbjct: 9   RLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQKELKEAKE 68

Query: 130 LMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRAGTGGEE 189
           L+     DKD+ ++A EE+N+  EE K+L+  L   L+P+D  D +  ILE+RAG GGEE
Sbjct: 69  LLKS--SDKDLRELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRAGAGGEE 128

Query: 190 ASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
           A+LFA D+F+MY++YA++KGWK  ++   ++ L GYK
Sbjct: 129 AALFAADLFRMYQKYAEEKGWKVSILSSNKTGLGGYK 163

[Close]
BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match: RF1_PELTS (Peptide chain release factor 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=prfA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-25
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 67  MEQRLRAIELRSTFLLNIINRPE-----APPSEYAKANKELKKLRDTMDLINELRSRQKE 126
           M ++L +IE +   L N+I  PE     A   EY KA+ EL    D + +  + +   KE
Sbjct: 1   MIEKLDSIEKKYEELENLIGNPEIIADIARWQEYVKAHAELA---DIVAVYRDYKKVVKE 60

Query: 127 INGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRA 186
           I     LM E P D+D+ +MA  EL++  E++  L++ L   LLP+D  DE+  ILE+RA
Sbjct: 61  IQDTIALMKEEP-DEDLREMAQAELDELTEKKDNLENRLKMLLLPKDPNDEKNVILEIRA 120

Query: 187 GTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
           GTGGEEA+LFA D+F+MY RYA+++GW+ E++D   +D+ G+K
Sbjct: 121 GTGGEEAALFAADLFRMYSRYAERQGWRTEILDANYTDIGGFK 159

[Close]
BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match: RF1_PARL1 (Peptide chain release factor 1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=prfA PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.5e-24
Identity = 64/159 (40.25%), Postives = 97/159 (61.01%), Query Frame = 1 

Query: 66  IMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKEINGL 125
           I E+RL+++  R   + + +N  + P   +   +KE  +L      I  L +R++E    
Sbjct: 2   IPEERLQSVIARFEAVQSEMNS-DVPRDRFVALSKEFSELEPVAAAIGHLLARRREYADA 61

Query: 126 RTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRAGTGG 185
             L+      +DM +MA EE+ +  EE  RL+H +   LLP+D AD+R  ILEVRAGTGG
Sbjct: 62  EQLL----RVRDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGG 121

Query: 186 EEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
           +EA+LFA D+F+MYERYA  +GWK E++  +E ++ GYK
Sbjct: 122 DEAALFAGDLFRMYERYASNQGWKVELIAASEGEMGGYK 155

[Close]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match: A0A0D2SBQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G116300 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 147/228 (64.47%), Postives = 176/228 (77.19%), Query Frame = 1 

Query: 2   RIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLSM 61
           R+ R  +  +  +R + +  ++NP        L P    +     R+YS  E+Q Q LS 
Sbjct: 3   RLSRGLILCMNSLRQIQV-AKSNPHPRNQRSFLLPAIPNIFLSFCRYYST-ELQPQ-LST 62

Query: 62  ELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKE 121
           +L+KIMEQRL AIE RS FL N +N+PEA P+EY+KANKEL KLRD+MDLINELR++QKE
Sbjct: 63  DLLKIMEQRLVAIEHRSAFLENFMNQPEASPTEYSKANKELHKLRDSMDLINELRTKQKE 122

Query: 122 INGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRA 181
           I+ LR+LM ECP DKDML+MATE+L +A+EEEKRLQ+ LL SLLPRDDADER CILEVRA
Sbjct: 123 IDSLRSLMAECPNDKDMLEMATEDLGKALEEEKRLQNLLLKSLLPRDDADERDCILEVRA 182

Query: 182 GTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           GTGGEEASLFAMD+FKMYERY+QKKGWKFEVVDI ESDLKGYK  S A
Sbjct: 183 GTGGEEASLFAMDVFKMYERYSQKKGWKFEVVDIAESDLKGYKEASAA 227

[Close]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match: A0A0B0P8M4_GOSAR (Peptide chain release factor 1 OS=Gossypium arboreum GN=F383_25046 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.3e-67
Identity = 147/228 (64.47%), Postives = 178/228 (78.07%), Query Frame = 1 

Query: 2   RIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLSM 61
           R+ R  +  +  +R + +    +P    +  L   P+  LS    R+YS  E+Q Q LS 
Sbjct: 3   RLSRGLIPCMNSLRQIQVAKSPHPRNQRSFLLPAIPNIFLSF--CRYYST-ELQPQ-LST 62

Query: 62  ELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKE 121
           +L+K+MEQRL AIE RS FL N +N+PEA P+EY+KAN+EL KLRD+MDLINELR++QKE
Sbjct: 63  DLLKVMEQRLAAIEHRSAFLENFMNQPEASPTEYSKANEELHKLRDSMDLINELRTKQKE 122

Query: 122 INGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRA 181
           I+GLR+LM ECP DKDML+MATE+L +A+EEEKRLQ+ LL SLLPRDDADER CILEVRA
Sbjct: 123 IDGLRSLMAECPNDKDMLEMATEDLGKALEEEKRLQNLLLKSLLPRDDADERDCILEVRA 182

Query: 182 GTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           GTGGEEASLFAMD+FKMYERY+QKKGWKFEVVDI ESDLKGYK  S A
Sbjct: 183 GTGGEEASLFAMDVFKMYERYSQKKGWKFEVVDIAESDLKGYKQASAA 226

[Close]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match: A0A061DZH6_THECC (Peptide chain release factor, putative OS=Theobroma cacao GN=TCM_004929 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.4e-67
Identity = 139/193 (72.02%), Postives = 164/193 (84.97%), Query Frame = 1 

Query: 37  PSDLLSTPSVRFYSKGEVQTQQLSMELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYA 96
           P  + ST S   Y   E+Q Q LS +L+KIMEQRL AIE RS +L N++N+PEA P+EY+
Sbjct: 36  PEIVNSTLSFSRYYSTELQPQ-LSTDLLKIMEQRLSAIEHRSAYLENLMNQPEASPAEYS 95

Query: 97  KANKELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRL 156
           KANKEL+KL+D+M+LINELR++QKEI+GLR+LM +C +DKDMLDMATE+L QA+EEEKRL
Sbjct: 96  KANKELRKLKDSMELINELRTKQKEIDGLRSLMTKCLDDKDMLDMATEDLGQALEEEKRL 155

Query: 157 QHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDIT 216
           Q+ LL SLLPRDDADER CILEVRAGTGGEEASLFAMD+FKMYERY+ KKGWKFEVV IT
Sbjct: 156 QNLLLKSLLPRDDADERDCILEVRAGTGGEEASLFAMDVFKMYERYSHKKGWKFEVVGIT 215

Query: 217 ESDLKGYKVNSLA 230
           ESDLKGYK  S A
Sbjct: 216 ESDLKGYKEASAA 227

[Close]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match: W9QNI3_9ROSA (Peptide chain release factor 1 OS=Morus notabilis GN=L484_013874 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 139/217 (64.06%), Postives = 170/217 (78.34%), Query Frame = 1 

Query: 19  LHCRTNPAQICTNPLLPPPSDLLSTPS-----VRFYSK-GEVQTQQLSMELIKIMEQRLR 78
           L C      + T  +   P    +TP+     +R YS  GE+Q Q LS E+I+IMEQRL 
Sbjct: 12  LQCVPTITNVLTQGISVAPPSAAATPTSSLLIIRSYSSIGELQPQ-LSPEIIRIMEQRLT 71

Query: 79  AIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKEINGLRTLMDEC 138
           AIE R+ FL N++N+PEA P+EYA+ANKEL+KL+ + DLI+ELRS+QKEINGL++L  +C
Sbjct: 72  AIEYRTAFLQNLVNQPEASPAEYARANKELRKLKSSADLISELRSKQKEINGLKSLRVDC 131

Query: 139 PEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFA 198
            EDKDM+ MATEEL +A+ EEKRLQ+ LL SLLP+DDADER CILEVRAGTGGEEASLFA
Sbjct: 132 SEDKDMVSMATEELGEAMVEEKRLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 191

Query: 199 MDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           MDIFKMYE+Y+QKKGWKFEVVD+TESDL+GYK  S A
Sbjct: 192 MDIFKMYEKYSQKKGWKFEVVDLTESDLRGYKEASAA 227

[Close]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match: A0A067JZX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14099 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65
Identity = 149/234 (63.68%), Postives = 177/234 (75.64%), Query Frame = 1 

Query: 1   MRIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSV-----RFYSKGEVQ 60
           MRI R     +  +R++    ++ PA   TNP     S   +  +      R YS  E+Q
Sbjct: 1   MRIDRGLKWSVNVVRSIK-QLQSTPAVSHTNPFYRKSSFTSAVANAFLLLSRSYST-ELQ 60

Query: 61  TQQLSMELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINEL 120
           +Q LS +LI+IM+QRL AIE RS +L N INRPEA P+E A+ANKEL+K+R +MDLI EL
Sbjct: 61  SQ-LSPDLIRIMDQRLSAIEHRSAYLENFINRPEASPTESARANKELRKIRGSMDLITEL 120

Query: 121 RSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGC 180
           RS+QKEI+ L +LM ECPEDKDMLDMA EEL+QA+EEEKRLQ+ LL SLLP+DDADER C
Sbjct: 121 RSKQKEIHSLSSLMAECPEDKDMLDMANEELSQAMEEEKRLQNLLLKSLLPKDDADERDC 180

Query: 181 ILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           ILEVRAGTGGEEASLFAMD+FKMYERY+QKKGWKFEVVDI ESDLKGYK  S A
Sbjct: 181 ILEVRAGTGGEEASLFAMDVFKMYERYSQKKGWKFEVVDIAESDLKGYKEASAA 231

[Close]
BLAST of CmaCh04G018670.1 vs. TAIR10
Match: AT2G47020.1 (AT2G47020.1 Peptide chain release factor 1)

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-64
Identity = 126/190 (66.32%), Postives = 158/190 (83.16%), Query Frame = 1 

Query: 40  LLSTPSVRFYSKGEVQTQQLSMELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKAN 99
           +LS+  +R Y+ G     QLS +LIKIM+QRL AIE R+  L  +IN+PE  P E+++AN
Sbjct: 31  VLSSNMIRLYTTG--MEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRAN 90

Query: 100 KELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHS 159
           KEL+KLRD+M LIN+LR++QKEI+GL++L+ E  +DKDMLD+A  EL++AVEEEKRLQ  
Sbjct: 91  KELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTL 150

Query: 160 LLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESD 219
           LL SLLP+D+ADER CILEVRAGTGGEEASLFAMDIF+MYERY+QKKGWKF++VDITESD
Sbjct: 151 LLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESD 210

Query: 220 LKGYKVNSLA 230
           +KGYK  S A
Sbjct: 211 MKGYKEASAA 218

[Close]
BLAST of CmaCh04G018670.1 vs. TAIR10
Match: AT3G62910.1 (AT3G62910.1 Peptide chain release factor 1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-21
Identity = 47/132 (35.61%), Postives = 80/132 (60.61%), Query Frame = 1 

Query: 93  SEYAKANKELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEE 152
           SEY K  + + +L + + +    +  +K++   + L  E  +D+DM +M   E+N   +E
Sbjct: 85  SEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAEMIGSEINSLTKE 144

Query: 153 EKRLQHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEV 212
            + L+  L   LLP D  D R  +LEVRAGTGG+EA+++  D+ +MY+RY+++  WKF +
Sbjct: 145 IEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSM 204

Query: 213 VDITESDLKGYK 225
           V  +E++  GYK
Sbjct: 205 VSCSEAEHGGYK 216

[Close]
BLAST of CmaCh04G018670.1 vs. TAIR10
Match: AT1G56350.1 (AT1G56350.1 Peptide chain release factor 2)

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-07
Identity = 34/112 (30.36%), Postives = 56/112 (50.00%), Query Frame = 1 

Query: 121 EINGLRTLMDECPEDKDMLDMATEELNQAVEEE--------KRLQHSLLTSLLPRDDADE 180
           ++ G+ T   E  E  DML +A EE +  +E E        +R+        L   D D 
Sbjct: 174 KMKGVMTFERELLEHIDMLKLAKEENDSELESETLKALIDMRRVSKEKELEALLSADNDP 233

Query: 181 RGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
             C +EV+AG GG E++ +A  + +MY+ +AQ++ +   VVD    ++ G K
Sbjct: 234 CSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIK 285

[Close]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match: gi|659090343|ref|XP_008445965.1| (PREDICTED: peptide chain release factor 1-like, mitochondrial [Cucumis melo])

HSP 1 Score: 357.8 bits (917), Expect = 1.4e-95
Identity = 188/224 (83.93%), Postives = 203/224 (90.62%), Query Frame = 1 

Query: 1   MRIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLS 60
           MRI+R T+RL+EQIRTLALHCR N ++I  NP LP   D LS+PS RFYSKGEVQ+QQLS
Sbjct: 1   MRINRGTMRLVEQIRTLALHCRNNSSRITKNPSLPFHFDPLSSPSFRFYSKGEVQSQQLS 60

Query: 61  MELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQK 120
           MELIKIMEQRL AIELR+TFLLNIINRPEAPP++YAKANKELKKLRDTM+LI ELRS+QK
Sbjct: 61  MELIKIMEQRLTAIELRNTFLLNIINRPEAPPADYAKANKELKKLRDTMNLITELRSKQK 120

Query: 121 EINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVR 180
           EINGLRTLM+EC ED+DM DMATEEL QAVEEEKRLQ  LL SLLPRDDADER  ILEVR
Sbjct: 121 EINGLRTLMEECSEDRDMFDMATEELEQAVEEEKRLQQLLLKSLLPRDDADERDSILEVR 180

Query: 181 AGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
           AGTGG+EASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK
Sbjct: 181 AGTGGDEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 224

[Close]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match: gi|449435146|ref|XP_004135356.1| (PREDICTED: peptide chain release factor 1-like, mitochondrial [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 187/224 (83.48%), Postives = 203/224 (90.62%), Query Frame = 1 

Query: 1   MRIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLS 60
           MRI+R T+RL+EQ+RTLALHCR + + I  NPLL  PSD LS+ S+RFYSKGEVQ+QQLS
Sbjct: 1   MRINRGTIRLVEQVRTLALHCRNDSSGITKNPLLSLPSDPLSSLSLRFYSKGEVQSQQLS 60

Query: 61  MELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQK 120
           MELIKIMEQRL AIELR+TFLLNIINRPEAPP+EYAKANKELKKLRDTM+LI ELRS+QK
Sbjct: 61  MELIKIMEQRLTAIELRNTFLLNIINRPEAPPAEYAKANKELKKLRDTMNLITELRSKQK 120

Query: 121 EINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVR 180
           EINGLRTLM+E  ED+DM DMATEEL QAVEEEKRLQ  LL SLLPRDDADER  ILEVR
Sbjct: 121 EINGLRTLMEESSEDRDMFDMATEELEQAVEEEKRLQQFLLKSLLPRDDADERDSILEVR 180

Query: 181 AGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 225
           AGTGG+EASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK
Sbjct: 181 AGTGGDEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYK 224

[Close]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match: gi|823187609|ref|XP_012490240.1| (PREDICTED: peptide chain release factor 1-like, mitochondrial isoform X1 [Gossypium raimondii])

HSP 1 Score: 263.8 bits (673), Expect = 2.8e-67
Identity = 147/228 (64.47%), Postives = 176/228 (77.19%), Query Frame = 1 

Query: 2   RIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLSM 61
           R+ R  +  +  +R + +  ++NP        L P    +     R+YS  E+Q Q LS 
Sbjct: 3   RLSRGLILCMNSLRQIQV-AKSNPHPRNQRSFLLPAIPNIFLSFCRYYST-ELQPQ-LST 62

Query: 62  ELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKE 121
           +L+KIMEQRL AIE RS FL N +N+PEA P+EY+KANKEL KLRD+MDLINELR++QKE
Sbjct: 63  DLLKIMEQRLVAIEHRSAFLENFMNQPEASPTEYSKANKELHKLRDSMDLINELRTKQKE 122

Query: 122 INGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRA 181
           I+ LR+LM ECP DKDML+MATE+L +A+EEEKRLQ+ LL SLLPRDDADER CILEVRA
Sbjct: 123 IDSLRSLMAECPNDKDMLEMATEDLGKALEEEKRLQNLLLKSLLPRDDADERDCILEVRA 182

Query: 182 GTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           GTGGEEASLFAMD+FKMYERY+QKKGWKFEVVDI ESDLKGYK  S A
Sbjct: 183 GTGGEEASLFAMDVFKMYERYSQKKGWKFEVVDIAESDLKGYKEASAA 227

[Close]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match: gi|728841026|gb|KHG20469.1| (Peptide chain release factor 1 [Gossypium arboreum])

HSP 1 Score: 263.1 bits (671), Expect = 4.8e-67
Identity = 147/228 (64.47%), Postives = 178/228 (78.07%), Query Frame = 1 

Query: 2   RIHRPTVRLLEQIRTLALHCRTNPAQICTNPLLPPPSDLLSTPSVRFYSKGEVQTQQLSM 61
           R+ R  +  +  +R + +    +P    +  L   P+  LS    R+YS  E+Q Q LS 
Sbjct: 3   RLSRGLIPCMNSLRQIQVAKSPHPRNQRSFLLPAIPNIFLSF--CRYYST-ELQPQ-LST 62

Query: 62  ELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYAKANKELKKLRDTMDLINELRSRQKE 121
           +L+K+MEQRL AIE RS FL N +N+PEA P+EY+KAN+EL KLRD+MDLINELR++QKE
Sbjct: 63  DLLKVMEQRLAAIEHRSAFLENFMNQPEASPTEYSKANEELHKLRDSMDLINELRTKQKE 122

Query: 122 INGLRTLMDECPEDKDMLDMATEELNQAVEEEKRLQHSLLTSLLPRDDADERGCILEVRA 181
           I+GLR+LM ECP DKDML+MATE+L +A+EEEKRLQ+ LL SLLPRDDADER CILEVRA
Sbjct: 123 IDGLRSLMAECPNDKDMLEMATEDLGKALEEEKRLQNLLLKSLLPRDDADERDCILEVRA 182

Query: 182 GTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKVNSLA 230
           GTGGEEASLFAMD+FKMYERY+QKKGWKFEVVDI ESDLKGYK  S A
Sbjct: 183 GTGGEEASLFAMDVFKMYERYSQKKGWKFEVVDIAESDLKGYKQASAA 226

[Close]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match: gi|590720216|ref|XP_007051271.1| (Peptide chain release factor, putative [Theobroma cacao])

HSP 1 Score: 262.7 bits (670), Expect = 6.3e-67
Identity = 139/193 (72.02%), Postives = 164/193 (84.97%), Query Frame = 1 

Query: 37  PSDLLSTPSVRFYSKGEVQTQQLSMELIKIMEQRLRAIELRSTFLLNIINRPEAPPSEYA 96
           P  + ST S   Y   E+Q Q LS +L+KIMEQRL AIE RS +L N++N+PEA P+EY+
Sbjct: 36  PEIVNSTLSFSRYYSTELQPQ-LSTDLLKIMEQRLSAIEHRSAYLENLMNQPEASPAEYS 95

Query: 97  KANKELKKLRDTMDLINELRSRQKEINGLRTLMDECPEDKDMLDMATEELNQAVEEEKRL 156
           KANKEL+KL+D+M+LINELR++QKEI+GLR+LM +C +DKDMLDMATE+L QA+EEEKRL
Sbjct: 96  KANKELRKLKDSMELINELRTKQKEIDGLRSLMTKCLDDKDMLDMATEDLGQALEEEKRL 155

Query: 157 QHSLLTSLLPRDDADERGCILEVRAGTGGEEASLFAMDIFKMYERYAQKKGWKFEVVDIT 216
           Q+ LL SLLPRDDADER CILEVRAGTGGEEASLFAMD+FKMYERY+ KKGWKFEVV IT
Sbjct: 156 QNLLLKSLLPRDDADERDCILEVRAGTGGEEASLFAMDVFKMYERYSHKKGWKFEVVGIT 215

Query: 217 ESDLKGYKVNSLA 230
           ESDLKGYK  S A
Sbjct: 216 ESDLKGYKEASAA 227

The following BLAST results are available for this feature:
BLAST of CmaCh04G018670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RF1_RHORT1.8e-2640.49Peptide chain release factor 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH... [more]
RF1_METSB2.0e-2543.61Peptide chain release factor 1 OS=Methylocella silvestris (strain BL2 / DSM 1551... [more]
RF1_AQUAE5.9e-2538.85Peptide chain release factor 1 OS=Aquifex aeolicus (strain VF5) GN=prfA PE=3 SV=... [more]
RF1_PELTS7.7e-2541.72Peptide chain release factor 1 OS=Pelotomaculum thermopropionicum (strain DSM 13... [more]
RF1_PARL16.5e-2440.25Peptide chain release factor 1 OS=Parvibaculum lavamentivorans (strain DS-1 / DS... [more]
BLAST of CmaCh04G018670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2SBQ4_GOSRA2.0e-6764.47Uncharacterized protein OS=Gossypium raimondii GN=B456_007G116300 PE=3 SV=1[more]
A0A0B0P8M4_GOSAR3.3e-6764.47Peptide chain release factor 1 OS=Gossypium arboreum GN=F383_25046 PE=3 SV=1[more]
A0A061DZH6_THECC4.4e-6772.02Peptide chain release factor, putative OS=Theobroma cacao GN=TCM_004929 PE=3 SV=... [more]
W9QNI3_9ROSA1.1e-6564.06Peptide chain release factor 1 OS=Morus notabilis GN=L484_013874 PE=3 SV=1[more]
A0A067JZX0_JATCU2.4e-6563.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14099 PE=3 SV=1[more]
BLAST of CmaCh04G018670.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47020.13.1e-6466.32 Peptide chain release factor 1[more]
AT3G62910.17.2e-2135.61 Peptide chain release factor 1[more]
AT1G56350.15.9e-0730.36 Peptide chain release factor 2[more]
BLAST of CmaCh04G018670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090343|ref|XP_008445965.1|1.4e-9583.93PREDICTED: peptide chain release factor 1-like, mitochondrial [Cucumis melo][more]
gi|449435146|ref|XP_004135356.1|1.2e-9483.48PREDICTED: peptide chain release factor 1-like, mitochondrial [Cucumis sativus][more]
gi|823187609|ref|XP_012490240.1|2.8e-6764.47PREDICTED: peptide chain release factor 1-like, mitochondrial isoform X1 [Gossyp... [more]
gi|728841026|gb|KHG20469.1|4.8e-6764.47Peptide chain release factor 1 [Gossypium arboreum][more]
gi|590720216|ref|XP_007051271.1|6.3e-6772.02Peptide chain release factor, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005139PCRF
Vocabulary: Molecular Function
TermDefinition
GO:0016149translation release factor activity, codon specific
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006415 translational termination
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0006449 regulation of translational termination
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
cellular_component GO:0018444 translation release factor complex
molecular_function GO:0016149 translation release factor activity, codon specific
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G018670CmaCh04G018670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G018670.1CmaCh04G018670.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G018670.1.exon.1CmaCh04G018670.1.exon.1exon
CmaCh04G018670.1.exon.2CmaCh04G018670.1.exon.2exon
CmaCh04G018670.1.exon.3CmaCh04G018670.1.exon.3exon
CmaCh04G018670.1.exon.4CmaCh04G018670.1.exon.4exon
CmaCh04G018670.1.exon.5CmaCh04G018670.1.exon.5exon
CmaCh04G018670.1.exon.6CmaCh04G018670.1.exon.6exon
CmaCh04G018670.1.exon.7CmaCh04G018670.1.exon.7exon
CmaCh04G018670.1.exon.8CmaCh04G018670.1.exon.8exon
CmaCh04G018670.1.exon.9CmaCh04G018670.1.exon.9exon
CmaCh04G018670.1.exon.10CmaCh04G018670.1.exon.10exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G018670.1.CDS.1CmaCh04G018670.1.CDS.1CDS
CmaCh04G018670.1.CDS.2CmaCh04G018670.1.CDS.2CDS
CmaCh04G018670.1.CDS.3CmaCh04G018670.1.CDS.3CDS
CmaCh04G018670.1.CDS.4CmaCh04G018670.1.CDS.4CDS
CmaCh04G018670.1.CDS.5CmaCh04G018670.1.CDS.5CDS
CmaCh04G018670.1.CDS.6CmaCh04G018670.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G018670.1.three_prime_UTR.1CmaCh04G018670.1.three_prime_UTR.1three_prime_UTR
CmaCh04G018670.1.three_prime_UTR.2CmaCh04G018670.1.three_prime_UTR.2three_prime_UTR
CmaCh04G018670.1.three_prime_UTR.3CmaCh04G018670.1.three_prime_UTR.3three_prime_UTR
CmaCh04G018670.1.three_prime_UTR.4CmaCh04G018670.1.three_prime_UTR.4three_prime_UTR
CmaCh04G018670.1.three_prime_UTR.5CmaCh04G018670.1.three_prime_UTR.5three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005139Peptide chain release factorPFAMPF03462PCRFcoord: 92..225
score: 3.2
IPR005139Peptide chain release factorSMARTSM00937PCRF_a_2coord: 127..235
score: 8.5
NoneNo IPR availableunknownCoilCoilcoord: 139..159
score: -coord: 95..115
scor
NoneNo IPR availableGENE3DG3DSA:1.20.58.410coord: 92..155
score: 2.
NoneNo IPR availablePANTHERPTHR11075PEPTIDE CHAIN RELEASE FACTORcoord: 58..224
score: 8.7
NoneNo IPR availablePANTHERPTHR11075:SF9PEPTIDE CHAIN RELEASE FACTOR 1, MITOCHONDRIAL-RELATEDcoord: 58..224
score: 8.7
NoneNo IPR availableunknownSSF75620Release factorcoord: 93..224
score: 2.49