CmaCh04G014740.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G014740.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP synthase subunit beta
Location	Cma_Chr04 : 7505760 .. 7506375 (-)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAAATATTTGTTGAAAAAGAGCAATTGTGCTTTATCTTTGTTAGGCCGATAGCAAATGTGCCCTTGTCTGTGGTCAAATGAATTAGCCCCCAGGTGCTCGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCTGAGCACTTCCGTAATGCTGAAGGGCAATGCTTCTCTTCATCGTCAACATTTTTCCGTTTTACCCAGGTAAGCTTGTGCTCCGAGGTTCGTATTGATGCTCTGTTTTGTTAAGATCTTACTGTGTCAATGTCAAGTTGAGAATCATATTAACGGCTTGTCTTATTTCAAATTATCCTTTTTCTTCTGTCTCACAGGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGCCTTCAAGAGCGTACCACAACCACAAAGAAAGGTTCTATCACTTCAGTTCAAGCTATCTACGTGCCTGCTGATGACTTGACTGACCCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCCACAACTATGTTGTCACGACAGGTGCAATCAGGTTTAATTCTGAGATGATTTCATACGTTGTATTCTACCCTATCTGA

mRNA sequence

ATGCCCCCAGGTGCTCGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCTGAGCACTTCCGTAATGCTGAAGGGCAATGCTTCTCTTCATCGTCAACATTTTTCCGTTTTACCCAGGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGCCTTCAAGAGCGTACCACAACCACAAAGAAAGGTTCTATCACTTCAGTTCAAGCTATCTACGTGCCTGCTGATGACTTGACTGACCCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCCACAACTATGTTGTCACGACAGGTGCAATCAGGTTTAATTCTGAGATGATTTCATACGTTGTATTCTACCCTATCTGA

Coding sequence (CDS)

ATGCCCCCAGGTGCTCGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCTGAGCACTTCCGTAATGCTGAAGGGCAATGCTTCTCTTCATCGTCAACATTTTTCCGTTTTACCCAGGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGCCTTCAAGAGCGTACCACAACCACAAAGAAAGGTTCTATCACTTCAGTTCAAGCTATCTACGTGCCTGCTGATGACTTGACTGACCCCTGCTCCTGCTACCACTTTTGCTCACTTGGATGCCACAACTATGTTGTCACGACAGGTGCAATCAGGTTTAATTCTGAGATGATTTCATACGTTGTATTCTACCCTATCTGA

Protein sequence

MPPGARARVGLTGLTVAEHFRNAEGQCFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFNSEMISYVVFYPI

Homology

[Close]

BLAST of CmaCh04G014740.1 vs. Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 308 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 367

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 368 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 427

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 428 SELGIYPAVDPL 434

[Close]

BLAST of CmaCh04G014740.1 vs. Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 298 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 357

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 358 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 417

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 418 SELGIYPAVDPL 424

[Close]

BLAST of CmaCh04G014740.1 vs. Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 299 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 358

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 359 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 418

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 419 SELGIYPAVDPL 425

[Close]

BLAST of CmaCh04G014740.1 vs. Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 306 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 365

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 366 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 425

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 426 SELGIYPAVDPL 432

[Close]

BLAST of CmaCh04G014740.1 vs. Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-38
Identity = 92/132 (69.70%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPG+RARVGLTGLTVAEHFR+AEG+         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 294 PPGSRARVGLTGLTVAEHFRDAEGEDVLLFVDKRFRFTQANSEVSALLGRIPSAVGYQPT 353

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 354 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 413

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 414 SELGIYPAVDPL 420

[Close]

BLAST of CmaCh04G014740.1 vs. TrEMBL
Match: B4IKQ8_DROSE (ATP synthase subunit beta OS=Drosophila sechellia GN=Dsec\GM13022 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-38
Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARV LTGLTVAE+FR+ EGQ         FRFTQA SEVSALLGRIPSAVGYQPT
Sbjct: 252 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPT 311

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHN 110
           LATD+G +QER TTTKKGSITSVQAIYVPADDLTDP  CY+  S GCH+
Sbjct: 312 LATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPCYYIRSFGCHH 360

[Close]

BLAST of CmaCh04G014740.1 vs. TrEMBL
Match: I1HQG8_BRADI (ATP synthase subunit beta OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 88/119 (73.95%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 298 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 357

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRF 120
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L     +     + F
Sbjct: 358 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQACLHF 416

[Close]

BLAST of CmaCh04G014740.1 vs. TrEMBL
Match: F2D5B2_HORVD (ATP synthase subunit beta OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 301 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 360

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 361 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRSI 420

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 421 SELGIYPAVDPL 427

[Close]

BLAST of CmaCh04G014740.1 vs. TrEMBL
Match: M0Z2C1_HORVD (ATP synthase subunit beta OS=Hordeum vulgare var. distichum PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 165 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 224

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 225 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRSI 284

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 285 SELGIYPAVDPL 291

[Close]

BLAST of CmaCh04G014740.1 vs. TrEMBL
Match: A0A067FBS5_CITSI (ATP synthase subunit beta OS=Citrus sinensis GN=CISIN_1g008610mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 90/127 (70.87%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 304 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 363

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L      V +  +R +
Sbjct: 364 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA--TTVLSRQVRMD 423

Query: 122 SEMISYV 128
           +  + Y+
Sbjct: 424 TSGLMYL 428

[Close]

BLAST of CmaCh04G014740.1 vs. TAIR10
Match: AT5G08670.1 (AT5G08670.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-38
Identity = 91/132 (68.94%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAE+FR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 302 PPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 361

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LA+DLG LQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 362 LASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 421

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 422 SELGIYPAVDPL 428

[Close]

BLAST of CmaCh04G014740.1 vs. TAIR10
Match: AT5G08680.1 (AT5G08680.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-38
Identity = 91/132 (68.94%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAE+FR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 305 PPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 364

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LA+DLG LQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 365 LASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 424

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 425 SELGIYPAVDPL 431

[Close]

BLAST of CmaCh04G014740.1 vs. TAIR10
Match: AT5G08690.1 (AT5G08690.1 ATP synthase alpha/beta family protein)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-38
Identity = 91/132 (68.94%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAE+FR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 302 PPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 361

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LA+DLG LQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 362 LASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 421

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 422 SELGIYPAVDPL 428

[Close]

BLAST of CmaCh04G014740.1 vs. TAIR10
Match: ATCG00480.1 (ATCG00480.1 ATP synthase subunit beta)

HSP 1 Score: 134.0 bits (336), Expect = 6.6e-32
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGAR RVGLT LT+AE+FR+   Q         FRF QA SEVSALLGR+PSAVGYQPT
Sbjct: 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPT 301

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSL 106
           L+T++G LQER T+TKKGSITS+QA+YVPADDLTDP     F  L
Sbjct: 302 LSTEMGTLQERITSTKKGSITSIQAVYVPADDLTDPAPATTFAHL 346

[Close]

BLAST of CmaCh04G014740.1 vs. NCBI nr
Match: gi|195355680|ref|XP_002044318.1| (GM13022 [Drosophila sechellia])

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARV LTGLTVAE+FR+ EGQ         FRFTQA SEVSALLGRIPSAVGYQPT
Sbjct: 252 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPT 311

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHN 110
           LATD+G +QER TTTKKGSITSVQAIYVPADDLTDP  CY+  S GCH+
Sbjct: 312 LATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPCYYIRSFGCHH 360

[Close]

BLAST of CmaCh04G014740.1 vs. NCBI nr
Match: gi|971505687|dbj|GAQ92517.1| (F0F1-type ATP synthase beta subunit [Klebsormidium flaccidum])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 307 PPGARARVGLTGLTVAEHFRDAEGQDVLFFVDNIFRFTQANSEVSALLGRIPSAVGYQPT 366

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 367 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRAI 426

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 427 SELGIYPAVDPL 433

[Close]

BLAST of CmaCh04G014740.1 vs. NCBI nr
Match: gi|641845872|gb|KDO64758.1| (hypothetical protein CISIN_1g008610mg [Citrus sinensis])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 90/127 (70.87%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 304 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 363

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L      V +  +R +
Sbjct: 364 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA--TTVLSRQVRMD 423

Query: 122 SEMISYV 128
           +  + Y+
Sbjct: 424 TSGLMYL 428

[Close]

BLAST of CmaCh04G014740.1 vs. NCBI nr
Match: gi|326492854|dbj|BAJ90283.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 301 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 360

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 361 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRSI 420

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 421 SELGIYPAVDPL 427

[Close]

BLAST of CmaCh04G014740.1 vs. NCBI nr
Match: gi|242054033|ref|XP_002456162.1| (hypothetical protein SORBIDRAFT_03g031470 [Sorghum bicolor])

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-37
Identity = 94/132 (71.21%), Postives = 97/132 (73.48%), Query Frame = 1


Query: 2   PPGARARVGLTGLTVAEHFRNAEGQ-CFSSSSTFFRFTQANSEVSALLGRIPSAVGYQPT 61
           PPGARARVGLTGLTVAEHFR+AEGQ         FRFTQANSEVSALLGRIPSAVGYQPT
Sbjct: 300 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 359

Query: 62  LATDLGGLQERTTTTKKGSITSVQAIYVPADDLTDPCSCYHFCSLGCHNYVVTTGAIRFN 121
           LATDLGGLQER TTTKKGSITSVQAIYVPADDLTDP     F  L       TT   R  
Sbjct: 360 LATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD-----ATTVLSRQI 419

Query: 122 SEMISYVVFYPI 133
           SE+  Y    P+
Sbjct: 420 SELGIYPAVDPL 426

The following BLAST results are available for this feature:

BLAST of CmaCh04G014740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPBM_HEVBR	3.1e-39	71.21	ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1	[more]
ATPBM_ORYSJ	3.1e-39	71.21	ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB...	[more]
ATPBM_MAIZE	3.1e-39	71.21	ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1	[more]
ATPBM_NICPL	3.1e-39	71.21	ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE...	[more]
ATPBM_DAUCA	4.4e-38	69.70	ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1	[more]

BLAST of CmaCh04G014740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B4IKQ8_DROSE	9.0e-38	77.06	ATP synthase subunit beta OS=Drosophila sechellia GN=Dsec\GM13022 PE=4 SV=1	[more]
I1HQG8_BRADI	2.6e-37	73.95	ATP synthase subunit beta OS=Brachypodium distachyon PE=4 SV=1	[more]
F2D5B2_HORVD	2.6e-37	71.21	ATP synthase subunit beta OS=Hordeum vulgare var. distichum PE=2 SV=1	[more]
M0Z2C1_HORVD	2.6e-37	71.21	ATP synthase subunit beta OS=Hordeum vulgare var. distichum PE=3 SV=1	[more]
A0A067FBS5_CITSI	2.6e-37	70.87	ATP synthase subunit beta OS=Citrus sinensis GN=CISIN_1g008610mg PE=4 SV=1	[more]

BLAST of CmaCh04G014740.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08670.1	1.2e-38	68.94	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	1.2e-38	68.94	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	1.2e-38	68.94	ATP synthase alpha/beta family protein	[more]
ATCG00480.1	6.6e-32	66.67	ATCG00480.1 ATP synthase subunit beta	[more]

BLAST of CmaCh04G014740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|195355680\|ref\|XP_002044318.1\|	1.3e-37	77.06	GM13022 [Drosophila sechellia]	[more]
gi\|971505687\|dbj\|GAQ92517.1\|	3.7e-37	71.21	F0F1-type ATP synthase beta subunit [Klebsormidium flaccidum]	[more]
gi\|641845872\|gb\|KDO64758.1\|	3.7e-37	70.87	hypothetical protein CISIN_1g008610mg [Citrus sinensis]	[more]
gi\|326492854\|dbj\|BAJ90283.1\|	3.7e-37	71.21	predicted protein [Hordeum vulgare subsp. vulgare]	[more]
gi\|242054033\|ref\|XP_002456162.1\|	4.9e-37	71.21	hypothetical protein SORBIDRAFT_03g031470 [Sorghum bicolor]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G014740	CmaCh04G014740	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014740.1	CmaCh04G014740.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014740.1.CDS.3	CmaCh04G014740.1.CDS.3	CDS
CmaCh04G014740.1.CDS.2	CmaCh04G014740.1.CDS.2	CDS
CmaCh04G014740.1.CDS.1	CmaCh04G014740.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014740.1.exon.3	CmaCh04G014740.1.exon.3	exon
CmaCh04G014740.1.exon.2	CmaCh04G014740.1.exon.2	exon
CmaCh04G014740.1.exon.1	CmaCh04G014740.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	PFAM	PF00006	ATP-synt_ab	coord: 1..98 score: 1.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..98 score: 2.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..107 score: 1.39
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 2..96 score: 1.1
None	No IPR available	PANTHER	PTHR15184:SF45	ATP SYNTHASE SUBUNIT BETA-1, MITOCHONDRIAL-RELATED	coord: 2..96 score: 1.1