CmaCh04G012570.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012570.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 6434847 .. 6435297 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGGTGCCATTTCAGAAAGGTAAACTGGCACAGACTGCACACCAAAAACAAATCCATTCAATCAATCAATCAAATTGAGTACACAATTACTGCTACTTCTACAATGAATCGATTCATTTTCTTCAATATATGGTCTGTATTTCTGTAATGACAGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

mRNA sequence

ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

Coding sequence (CDS)

ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

Protein sequence

MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFRAPLILAAYLIGKSNTNTKQQTANDEQCNAISNTIENGTK
Homology
[Close]
BLAST of CmaCh04G012570.1 vs. TrEMBL
Match: I3SDU5_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 1  MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFR 60
          M  GVSGRK AP V I AGTAA A E  HP P  I +VP   +FA + PI    WKPM  
Sbjct: 1  MLFGVSGRKNAPKVRIVAGTAAMAREIRHPQPSLIFSVPKLIKFADRTPIPTQSWKPMLI 60

Query: 61 APLILAAYLIGKSN 75
          APL L + +  + N
Sbjct: 61 APLYLGSAISDRYN 74

[Close]
BLAST of CmaCh04G012570.1 vs. NCBI nr
Match: gi|388500742|gb|AFK38437.1| (unknown [Medicago truncatula])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 1  MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFR 60
          M  GVSGRK AP V I AGTAA A E  HP P  I +VP   +FA + PI    WKPM  
Sbjct: 1  MLFGVSGRKNAPKVRIVAGTAAMAREIRHPQPSLIFSVPKLIKFADRTPIPTQSWKPMLI 60

Query: 61 APLILAAYLIGKSN 75
          APL L + +  + N
Sbjct: 61 APLYLGSAISDRYN 74

The following BLAST results are available for this feature:
BLAST of CmaCh04G012570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SDU5_MEDTR8.6e-0950.00Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
BLAST of CmaCh04G012570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|388500742|gb|AFK38437.1|1.2e-0850.00unknown [Medicago truncatula][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G012570CmaCh04G012570gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G012570.1CmaCh04G012570.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G012570.1.exon.1CmaCh04G012570.1.exon.1exon
CmaCh04G012570.1.exon.2CmaCh04G012570.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G012570.1.CDS.1CmaCh04G012570.1.CDS.1CDS
CmaCh04G012570.1.CDS.2CmaCh04G012570.1.CDS.2CDS