CmaCh04G012570 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 6434847 .. 6435297 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGGTGCCATTTCAGAAAGGTAAACTGGCACAGACTGCACACCAAAAACAAATCCATTCAATCAATCAATCAAATTGAGTACACAATTACTGCTACTTCTACAATGAATCGATTCATTTTCTTCAATATATGGTCTGTATTTCTGTAATGACAGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

mRNA sequence

ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

Coding sequence (CDS)

ATGGAGTTAGGAGTATCCGGAAGGAAGAAGGCTCCGACGGTCATCATCACGGCGGGGACTGCGGCGAGAGCCAATGAGACTCTCCATCCCCATCCGCCTACGATTTTGGCTGTACCGACATTTACAAGATTCGCCACCAAGATACCGATTGTGATGGCCATTTGGAAGCCCATGTTCAGAGCACCTCTGATTTTGGCTGCATACCTGATTGGCAAATCCAACACCAACACCAAGCAACAAACGGCCAATGATGAGCAGTGCAATGCTATTAGCAACACCATTGAGAATGGAACCAAATAA

Protein sequence

MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFRAPLILAAYLIGKSNTNTKQQTANDEQCNAISNTIENGTK
Homology
[Close]
BLAST of CmaCh04G012570 vs. TrEMBL
Match: I3SDU5_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 1  MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFR 60
          M  GVSGRK AP V I AGTAA A E  HP P  I +VP   +FA + PI    WKPM  
Sbjct: 1  MLFGVSGRKNAPKVRIVAGTAAMAREIRHPQPSLIFSVPKLIKFADRTPIPTQSWKPMLI 60

Query: 61 APLILAAYLIGKSN 75
          APL L + +  + N
Sbjct: 61 APLYLGSAISDRYN 74

[Close]
BLAST of CmaCh04G012570 vs. NCBI nr
Match: gi|388500742|gb|AFK38437.1| (unknown [Medicago truncatula])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 1  MELGVSGRKKAPTVIITAGTAARANETLHPHPPTILAVPTFTRFATKIPIVMAIWKPMFR 60
          M  GVSGRK AP V I AGTAA A E  HP P  I +VP   +FA + PI    WKPM  
Sbjct: 1  MLFGVSGRKNAPKVRIVAGTAAMAREIRHPQPSLIFSVPKLIKFADRTPIPTQSWKPMLI 60

Query: 61 APLILAAYLIGKSN 75
          APL L + +  + N
Sbjct: 61 APLYLGSAISDRYN 74

The following BLAST results are available for this feature:
BLAST of CmaCh04G012570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012570 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SDU5_MEDTR8.6e-0950.00Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
BLAST of CmaCh04G012570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|388500742|gb|AFK38437.1|1.2e-0850.00unknown [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012570.1CmaCh04G012570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012570Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012570Bottle gourd (USVL1VR-Ls)cmalsiB629
CmaCh04G012570Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G012570Cucumber (Gy14) v2cgybcmaB673
CmaCh04G012570Melon (DHL92) v3.6.1cmamedB719
CmaCh04G012570Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012570Silver-seed gourdcarcmaB0666
CmaCh04G012570Silver-seed gourdcarcmaB1170
CmaCh04G012570Cucumber (Chinese Long) v3cmacucB0884
CmaCh04G012570Watermelon (97103) v2cmawmbB740
CmaCh04G012570Wax gourdcmawgoB0892
CmaCh04G012570Wax gourdcmawgoB0905
CmaCh04G012570Cucurbita maxima (Rimu)cmacmaB538
CmaCh04G012570Cucumber (Gy14) v1cgycmaB0472
CmaCh04G012570Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012570Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G012570Cucurbita moschata (Rifu)cmacmoB745
CmaCh04G012570Wild cucumber (PI 183967)cmacpiB756
CmaCh04G012570Cucumber (Chinese Long) v2cmacuB746
CmaCh04G012570Melon (DHL92) v3.5.1cmameB633
CmaCh04G012570Melon (DHL92) v3.5.1cmameB652
CmaCh04G012570Watermelon (Charleston Gray)cmawcgB641
CmaCh04G012570Watermelon (97103) v1cmawmB723