CmaCh04G008710.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008710.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	3-hydroxyacyl-CoA dehydratase PASTICCINO 2
Location	Cma_Chr04 : 4473882 .. 4475202 (+)
Sequence length	678

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGATTATCATGATACAGCCTCTCCATGGCCTCCTTGGCAAGCTATATTTGATCCGCTTACAAATTTTGGTGTCGAAGATTTTCTTTCTTGCCCTGATTTTATCTTAGAAACGAAGCTGAATCTAGGTTTTGGTTTTTGCCTAATTAGGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTCAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTCATAAAACTGATTACTTCTTGGGTCTGGCAAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGTTCTTTTTTTGACTGGAAACCTTAATTACAAACTTAATTTACTATAAGAGATGATCCAAGATTCTTTTTACAATGAATCTATGCCTATCGGCTTTATGTGTAACTCCAATGCTTGATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGTGTAGTTCCATTAGGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGGTTAATGTTATTCTCCCATTCAGTTCGTCTTAATTCAGTGTACTTTACGAATATTTATCCCTAATTTTCATTTATTGTGTTGTTCTATTTATGGTTTTCTCTTTCTTATTGATATTCATTTAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

mRNA sequence

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAACAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Coding sequence (CDS)

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAACAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Protein sequence

MTFRIYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDRLVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYLFPPWSSAGLSQRQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSSGSSSCCFSFASVFLFAPFGNTKTVSGRKSTYVPLHACSEVKSSLKIQKRVQKKEDGAVEEVAAQITHKIRVGGILDKVEKPPNQRDQFRG

Homology

[Close]

BLAST of CmaCh04G008710.1 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 70/157 (44.59%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQFAQTAA LE+      LVRSPV+ATLPQ+GSRL+LTWGILWSFPE      
Sbjct: 44  YAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHIL 103

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+   F   P W               G+S    +I ++  
Sbjct: 104 VTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALP 163

[Close]

BLAST of CmaCh04G008710.1 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 69/157 (43.95%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQFAQTAA LE+      LVRSPV+ATLPQ+GSRL+LTWGILWSFPE      
Sbjct: 44  YAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHIL 103

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+   F   P W               G+S    +I ++  
Sbjct: 104 VTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALP 163

[Close]

BLAST of CmaCh04G008710.1 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYL 64
           +YL    ++       Y+A+E+PLQ AQTAAVLE+      LVRSPV+ATLPQ+GSRL+L
Sbjct: 28  LYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFL 87

Query: 65  TWGILWSFPELGIMYL 79
           TWGIL+SFPE+   +L
Sbjct: 88  TWGILYSFPEVRSHFL 103

[Close]

BLAST of CmaCh04G008710.1 vs. TrEMBL
Match: D7U6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 73/157 (46.50%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRLY+TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLYVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710.1 vs. TrEMBL
Match: A5C8R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-24
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRL +TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLXVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710.1 vs. TrEMBL
Match: A0A0D2TJY6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYL 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+ I Y 
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEI-IRYS 103

Query: 81  F----------PPWS------------SAGLSQRQQMIVMSC--FQESGKYSFSMPNEWN 135
           F          P W               G+S    +I  +    + S KY F MPN+WN
Sbjct: 104 FFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWN 163

[Close]

BLAST of CmaCh04G008710.1 vs. TrEMBL
Match: A0A0D2SQ28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 70/155 (45.16%), Postives = 84/155 (54.19%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELG---- 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+     
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEIRTHIL 103

Query: 81  -------------IMYLF----------PPWS----------SAGLSQRQQMIVMSC--F 135
                        I Y F          P W             G+S    +I  +    
Sbjct: 104 VTSLVISWAITEIIRYSFFGMKEAFGFAPSWHLWLSTFLVLYPTGISSEVGLIYFALPYI 163

[Close]

BLAST of CmaCh04G008710.1 vs. TrEMBL
Match: A0A067F375_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027621mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.3e-22
Identity = 72/173 (41.62%), Postives = 89/173 (51.45%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDRL--VRSPVTATLPQMGSRLYL 64
           +YL  + +        Y AVERPLQ AQTAAVLE+    L  VRSP+TATLPQ+ SRLY+
Sbjct: 28  LYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYV 87

Query: 65  TWGILWSFPE-----------------LGIMYLF----------PPWS------------ 124
           TWGILWSFP+                   I Y F          P W             
Sbjct: 88  TWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLY 147

Query: 125 SAGLSQRQQMI--VMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGS 135
            +G++    +I   +   +ES  Y   MPN+WNFSFDY Y A+L+L FYVPGS
Sbjct: 148 PSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFYVPGS 200

[Close]

BLAST of CmaCh04G008710.1 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYL 64
           +YL    ++       Y+A+E+PLQ AQTAAVLE+      LVRSPV+ATLPQ+GSRL+L
Sbjct: 28  LYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFL 87

Query: 65  TWGILWSFPELGIMYL 79
           TWGIL+SFPE+   +L
Sbjct: 88  TWGILYSFPEVRSHFL 103

[Close]

BLAST of CmaCh04G008710.1 vs. NCBI nr
Match: gi|225467969|ref|XP_002269096.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Vitis vinifera])

HSP 1 Score: 122.9 bits (307), Expect = 7.3e-25
Identity = 73/157 (46.50%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRLY+TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLYVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710.1 vs. NCBI nr
Match: gi|147833954|emb|CAN64341.1| (hypothetical protein VITISV_031565 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 6.2e-24
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRL +TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLXVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710.1 vs. NCBI nr
Match: gi|763776882|gb|KJB44005.1| (hypothetical protein B456_007G233000 [Gossypium raimondii])

HSP 1 Score: 119.4 bits (298), Expect = 8.1e-24
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYL 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+ I Y 
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEI-IRYS 103

Query: 81  F----------PPWS------------SAGLSQRQQMIVMSC--FQESGKYSFSMPNEWN 135
           F          P W               G+S    +I  +    + S KY F MPN+WN
Sbjct: 104 FFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWN 163

[Close]

BLAST of CmaCh04G008710.1 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein])

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 72/157 (45.86%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILW---------- 80
           YNAVERPLQF+QTAAVLE+      LVRSPVTATLPQ+GSRLY+TWGILW          
Sbjct: 44  YNAVERPLQFSQTAAVLEILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHIL 103

Query: 81  ----------------SFPELGIMYLFPP----WSS---------AGLSQRQQMIVMSC- 135
                           +F  +   + F P    W            G+S    +I ++  
Sbjct: 104 VTSLVVSWSITEIIRYAFYGMKETFGFAPSLLLWLRYSTFLLLYVTGISSEVGLIYLALP 163

[Close]

BLAST of CmaCh04G008710.1 vs. NCBI nr
Match: gi|763776883|gb|KJB44006.1| (hypothetical protein B456_007G233000 [Gossypium raimondii])

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-22
Identity = 70/155 (45.16%), Postives = 84/155 (54.19%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELG---- 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+     
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEIRTHIL 103

Query: 81  -------------IMYLF----------PPWS----------SAGLSQRQQMIVMSC--F 135
                        I Y F          P W             G+S    +I  +    
Sbjct: 104 VTSLVISWAITEIIRYSFFGMKEAFGFAPSWHLWLSTFLVLYPTGISSEVGLIYFALPYI 163

The following BLAST results are available for this feature:

BLAST of CmaCh04G008710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HACDA_ORYSJ	4.0e-23	44.59	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
HACDB_ORYSJ	2.0e-22	43.95	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
HACD_ARATH	2.6e-14	55.26	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]

BLAST of CmaCh04G008710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
D7U6A1_VITVI	5.1e-25	46.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=...	[more]
A5C8R1_VITVI	4.3e-24	45.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1	[more]
A0A0D2TJY6_GOSRA	5.6e-24	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1	[more]
A0A0D2SQ28_GOSRA	4.0e-22	45.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1	[more]
A0A067F375_CITSI	5.3e-22	41.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027621mg PE=4 SV=1	[more]

BLAST of CmaCh04G008710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10480.3	1.5e-15	55.26	Protein-tyrosine phosphatase-like, PTPLA	[more]

BLAST of CmaCh04G008710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|225467969\|ref\|XP_002269096.1\|	7.3e-25	46.50	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Viti...	[more]
gi\|147833954\|emb\|CAN64341.1\|	6.2e-24	45.86	hypothetical protein VITISV_031565 [Vitis vinifera]	[more]
gi\|763776882\|gb\|KJB44005.1\|	8.1e-24	50.00	hypothetical protein B456_007G233000 [Gossypium raimondii]	[more]
gi\|659102526\|ref\|XP_008452179.1\|	5.2e-23	45.86	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]	[more]
gi\|763776883\|gb\|KJB44006.1\|	5.8e-22	45.16	hypothetical protein B456_007G233000 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007482	Tyr_Pase-like_PTPLA

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G008710	CmaCh04G008710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G008710.1	CmaCh04G008710.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G008710.1.exon.1	CmaCh04G008710.1.exon.1	exon
CmaCh04G008710.1.exon.2	CmaCh04G008710.1.exon.2	exon
CmaCh04G008710.1.exon.3	CmaCh04G008710.1.exon.3	exon
CmaCh04G008710.1.exon.4	CmaCh04G008710.1.exon.4	exon
CmaCh04G008710.1.exon.5	CmaCh04G008710.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G008710.1.CDS.1	CmaCh04G008710.1.CDS.1	CDS
CmaCh04G008710.1.CDS.2	CmaCh04G008710.1.CDS.2	CDS
CmaCh04G008710.1.CDS.3	CmaCh04G008710.1.CDS.3	CDS
CmaCh04G008710.1.CDS.4	CmaCh04G008710.1.CDS.4	CDS
CmaCh04G008710.1.CDS.5	CmaCh04G008710.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 21..134 score: 6.6
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 32..82 score: 4.