CmaCh04G008710 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	3-hydroxyacyl-CoA dehydratase PASTICCINO 2
Location	Cma_Chr04 : 4473882 .. 4475202 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGATTATCATGATACAGCCTCTCCATGGCCTCCTTGGCAAGCTATATTTGATCCGCTTACAAATTTTGGTGTCGAAGATTTTCTTTCTTGCCCTGATTTTATCTTAGAAACGAAGCTGAATCTAGGTTTTGGTTTTTGCCTAATTAGGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTCAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTCATAAAACTGATTACTTCTTGGGTCTGGCAAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGTTCTTTTTTTGACTGGAAACCTTAATTACAAACTTAATTTACTATAAGAGATGATCCAAGATTCTTTTTACAATGAATCTATGCCTATCGGCTTTATGTGTAACTCCAATGCTTGATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGTGTAGTTCCATTAGGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGGTTAATGTTATTCTCCCATTCAGTTCGTCTTAATTCAGTGTACTTTACGAATATTTATCCCTAATTTTCATTTATTGTGTTGTTCTATTTATGGTTTTCTCTTTCTTATTGATATTCATTTAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

mRNA sequence

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAACAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Coding sequence (CDS)

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAACAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Protein sequence

MTFRIYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDRLVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYLFPPWSSAGLSQRQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSSGSSSCCFSFASVFLFAPFGNTKTVSGRKSTYVPLHACSEVKSSLKIQKRVQKKEDGAVEEVAAQITHKIRVGGILDKVEKPPNQRDQFRG

Homology

[Close]

BLAST of CmaCh04G008710 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 70/157 (44.59%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQFAQTAA LE+      LVRSPV+ATLPQ+GSRL+LTWGILWSFPE      
Sbjct: 44  YAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHIL 103

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+   F   P W               G+S    +I ++  
Sbjct: 104 VTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALP 163

[Close]

BLAST of CmaCh04G008710 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 69/157 (43.95%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQFAQTAA LE+      LVRSPV+ATLPQ+GSRL+LTWGILWSFPE      
Sbjct: 44  YAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHIL 103

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+   F   P W               G+S    +I ++  
Sbjct: 104 VTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALP 163

[Close]

BLAST of CmaCh04G008710 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYL 64
           +YL    ++       Y+A+E+PLQ AQTAAVLE+      LVRSPV+ATLPQ+GSRL+L
Sbjct: 28  LYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFL 87

Query: 65  TWGILWSFPELGIMYL 79
           TWGIL+SFPE+   +L
Sbjct: 88  TWGILYSFPEVRSHFL 103

[Close]

BLAST of CmaCh04G008710 vs. TrEMBL
Match: D7U6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 73/157 (46.50%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRLY+TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLYVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710 vs. TrEMBL
Match: A5C8R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-24
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRL +TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLXVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710 vs. TrEMBL
Match: A0A0D2TJY6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYL 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+ I Y 
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEI-IRYS 103

Query: 81  F----------PPWS------------SAGLSQRQQMIVMSC--FQESGKYSFSMPNEWN 135
           F          P W               G+S    +I  +    + S KY F MPN+WN
Sbjct: 104 FFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWN 163

[Close]

BLAST of CmaCh04G008710 vs. TrEMBL
Match: A0A0D2SQ28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 70/155 (45.16%), Postives = 84/155 (54.19%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELG---- 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+     
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEIRTHIL 103

Query: 81  -------------IMYLF----------PPWS----------SAGLSQRQQMIVMSC--F 135
                        I Y F          P W             G+S    +I  +    
Sbjct: 104 VTSLVISWAITEIIRYSFFGMKEAFGFAPSWHLWLSTFLVLYPTGISSEVGLIYFALPYI 163

[Close]

BLAST of CmaCh04G008710 vs. TrEMBL
Match: A0A067F375_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027621mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.3e-22
Identity = 72/173 (41.62%), Postives = 89/173 (51.45%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDRL--VRSPVTATLPQMGSRLYL 64
           +YL  + +        Y AVERPLQ AQTAAVLE+    L  VRSP+TATLPQ+ SRLY+
Sbjct: 28  LYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYV 87

Query: 65  TWGILWSFPE-----------------LGIMYLF----------PPWS------------ 124
           TWGILWSFP+                   I Y F          P W             
Sbjct: 88  TWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLY 147

Query: 125 SAGLSQRQQMI--VMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGS 135
            +G++    +I   +   +ES  Y   MPN+WNFSFDY Y A+L+L FYVPGS
Sbjct: 148 PSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFYVPGS 200

[Close]

BLAST of CmaCh04G008710 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 5   IYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYL 64
           +YL    ++       Y+A+E+PLQ AQTAAVLE+      LVRSPV+ATLPQ+GSRL+L
Sbjct: 28  LYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFL 87

Query: 65  TWGILWSFPELGIMYL 79
           TWGIL+SFPE+   +L
Sbjct: 88  TWGILYSFPEVRSHFL 103

[Close]

BLAST of CmaCh04G008710 vs. NCBI nr
Match: gi|225467969|ref|XP_002269096.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Vitis vinifera])

HSP 1 Score: 122.9 bits (307), Expect = 7.3e-25
Identity = 73/157 (46.50%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRLY+TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLYVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710 vs. NCBI nr
Match: gi|147833954|emb|CAN64341.1| (hypothetical protein VITISV_031565 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 6.2e-24
Identity = 72/157 (45.86%), Postives = 87/157 (55.41%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPE------ 80
           Y AVERPLQ AQTAAVLE+F     LVRSP+TATLPQ+GSRL +TWGILWSFPE      
Sbjct: 43  YRAVERPLQLAQTAAVLEIFHGLVGLVRSPITATLPQIGSRLXVTWGILWSFPEVQTHVL 102

Query: 81  ------------------LGIMYLF---PPWS------------SAGLSQRQQMIVMSC- 135
                              G+  L    P W               G++    +I ++  
Sbjct: 103 VSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRYSTFLLLYPTGITSEVGLIYIALP 162

[Close]

BLAST of CmaCh04G008710 vs. NCBI nr
Match: gi|763776882|gb|KJB44005.1| (hypothetical protein B456_007G233000 [Gossypium raimondii])

HSP 1 Score: 119.4 bits (298), Expect = 8.1e-24
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELGIMYL 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+ I Y 
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEI-IRYS 103

Query: 81  F----------PPWS------------SAGLSQRQQMIVMSC--FQESGKYSFSMPNEWN 135
           F          P W               G+S    +I  +    + S KY F MPN+WN
Sbjct: 104 FFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWN 163

[Close]

BLAST of CmaCh04G008710 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein])

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 72/157 (45.86%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILW---------- 80
           YNAVERPLQF+QTAAVLE+      LVRSPVTATLPQ+GSRLY+TWGILW          
Sbjct: 44  YNAVERPLQFSQTAAVLEILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHIL 103

Query: 81  ----------------SFPELGIMYLFPP----WSS---------AGLSQRQQMIVMSC- 135
                           +F  +   + F P    W            G+S    +I ++  
Sbjct: 104 VTSLVVSWSITEIIRYAFYGMKETFGFAPSLLLWLRYSTFLLLYVTGISSEVGLIYLALP 163

[Close]

BLAST of CmaCh04G008710 vs. NCBI nr
Match: gi|763776883|gb|KJB44006.1| (hypothetical protein B456_007G233000 [Gossypium raimondii])

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-22
Identity = 70/155 (45.16%), Postives = 84/155 (54.19%), Query Frame = 1


Query: 21  YNAVERPLQFAQTAAVLEVFPDR--LVRSPVTATLPQMGSRLYLTWGILWSFPELG---- 80
           YNAVE+PL  AQ+AAV+E+      LVRSPV++TLPQ+GSRLYLTWGILWSFPE+     
Sbjct: 44  YNAVEKPLLLAQSAAVMEILHGLIGLVRSPVSSTLPQIGSRLYLTWGILWSFPEIRTHIL 103

Query: 81  -------------IMYLF----------PPWS----------SAGLSQRQQMIVMSC--F 135
                        I Y F          P W             G+S    +I  +    
Sbjct: 104 VTSLVISWAITEIIRYSFFGMKEAFGFAPSWHLWLSTFLVLYPTGISSEVGLIYFALPYI 163

The following BLAST results are available for this feature:

BLAST of CmaCh04G008710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HACDA_ORYSJ	4.0e-23	44.59	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
HACDB_ORYSJ	2.0e-22	43.95	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
HACD_ARATH	2.6e-14	55.26	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]

BLAST of CmaCh04G008710 vs. TrEMBL


Match Name	E-value	Identity	Description
D7U6A1_VITVI	5.1e-25	46.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=...	[more]
A5C8R1_VITVI	4.3e-24	45.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1	[more]
A0A0D2TJY6_GOSRA	5.6e-24	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1	[more]
A0A0D2SQ28_GOSRA	4.0e-22	45.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1	[more]
A0A067F375_CITSI	5.3e-22	41.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027621mg PE=4 SV=1	[more]

BLAST of CmaCh04G008710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10480.3	1.5e-15	55.26	Protein-tyrosine phosphatase-like, PTPLA	[more]

BLAST of CmaCh04G008710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|225467969\|ref\|XP_002269096.1\|	7.3e-25	46.50	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Viti...	[more]
gi\|147833954\|emb\|CAN64341.1\|	6.2e-24	45.86	hypothetical protein VITISV_031565 [Vitis vinifera]	[more]
gi\|763776882\|gb\|KJB44005.1\|	8.1e-24	50.00	hypothetical protein B456_007G233000 [Gossypium raimondii]	[more]
gi\|659102526\|ref\|XP_008452179.1\|	5.2e-23	45.86	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]	[more]
gi\|763776883\|gb\|KJB44006.1\|	5.8e-22	45.16	hypothetical protein B456_007G233000 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007482	Tyr_Pase-like_PTPLA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008710.1	CmaCh04G008710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 21..134 score: 6.6
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 32..82 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G008710	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G008710	Melon (DHL92) v3.6.1	cmamedB778
CmaCh04G008710	Silver-seed gourd	carcmaB0015
CmaCh04G008710	Silver-seed gourd	carcmaB1414
CmaCh04G008710	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G008710	Watermelon (97103) v2	cmawmbB718
CmaCh04G008710	Wax gourd	cmawgoB0815
CmaCh04G008710	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G008710	Cucumber (Gy14) v1	cgycmaB0721
CmaCh04G008710	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G008710	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G008710	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G008710	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G008710	Melon (DHL92) v3.5.1	cmameB689
CmaCh04G008710	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G008710	Watermelon (97103) v1	cmawmB660
CmaCh04G008710	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G008710	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G008710	Bottle gourd (USVL1VR-Ls)	cmalsiB692