CmaCh04G002610.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G002610.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionZinc finger CCCH domain-containing protein 11
LocationCma_Chr04 : 1281395 .. 1284103 (+)
Sequence length694
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGGTTTCTACATTACTCATATAGTTAATTTTACTTTTAAAGGTAATTAATAGTCATATAAGTTCCATTTTGTTCTTCAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGTAATTCTATGTGTGAAATTCGTACAGATTGCTTGTTGCTTCAGTCATTTGCGATTCTGGCTCATGAGTTATGCCGAACAGTTTGTTCATGGCCGTGTCCTTAGTTTACAACATTACCTTGCCAGTCAAATTTCCTTCCATGCTGTCTGGTTAATGAGTTTTCTATCCCTTTATGCCCTCTATTTTTCATGTGTTTCTGTAGTGTCTTCCCCTCCTCACTCTCTGGTTCAAGAACGAATGTTATGGATCCAAAAAGAAATAGGAAAAGGAGTACAAGTAATTCTAGTCCACTAAGAGACCAAGGGGGATGACTGAACGGCCCTCTAGTTGTTTAATATTAAATAGTGAAATTACAAGAAAACCTTTTTGAGGTTTCACTACTTTGAGGCTTAAAACTAGTTAAAATCCTAACTCTAACCCATACGGATTGAATAATTCTCTTCTCTCCCCCAAAGATAGACACCATCATATAGCTGTGTAAGCCCATTCATATAAAGGCTTCAACTTGGTTAATTGAACAAACTATATCAGTAGAATTTGCCCGATCTCACCCTTTGAAGTTACAAAAATTGAAGAATATCCATATTCTTTCGGAAGAAGGGAAGTAGCATAAGTGGTGTATTTGGTTTTCATTATATGCACAAGTGATATGTTTGGTTTTCATTATACTTGTTGCAAAGAACTCACCAGCTTGGGAAATGATTGAACAGTGGTTGTTCTCCTAGCAATGGTCCACCGAGTATTTAACTTTCTACAAATTGCTGATAAAACAAAGACTTTCACCTTCTTAGGAGCTTTGAAGTTCCGTAGTTCATTGGAGAGTGATCTTGTAATAACCTCCAACTGCTTGGCAAGGCAGTCAAACAAAATCTTACTAGTGAATGTCCTTGGTTTATCTAATTTCTGAATTCGGTTATCACATTAGCTATTCTAACACACAAAAATCAATCTGTCGGTGAGGCTGGATCACCTCCACCTTTCTATGGATGAGGTTCCTCCTGAAATATTTTTCTAATATCTGCAAGTGTATTGGGTCAATTTTGTGCACTCCGACTAATCTTATGGGACAACTGCATTGCCTAGAAAATTTATAGGATTTTAAATCCTAGGAAGTAGCCACCATGATTTCTCTTGGCCATAACAAGCACTAGGCCTTGAATAGGAGATCTCAATTCTCAACCACCATCTTCCAATCCAAGTGCGCCATCAATGATTGTACTTGTTAATTGGAAGTATGACAATCTACTCTATCCTCCCATTCTAATGAAATCTCTTAATCGTCCATCAATCTTATCAACCTTCAACAGAATCGTGAAGATGTGAGAGATGGTGAATTTCTAAAGCTTTCGGGTTCAAAGGTGTGCATGATTGATATAGCTTCTTTCAAAAGAATGCCTTCATTGATCTTTGTAGCTCATTCTTCCCAAGATCTGATACCTAAAACTTATGAGACAGTAGGATTTCTTTGATGAGAATACAATTACGCGGATACCCTTGCTCCACCTTGGATCTTCATTGATTACAAAATTGGTCCTAGATAGATAGCAGTTAGAGAAAGGAACTCTGTCCATAAAGCAACACTTGAAGCTTCGATATACCAATCAAAGCTTTGTAGACGTTCCTTCTCAAGACTCTTCATGTCTATTGCATCTCAATCACTGTGAAAATCATTTGAGAGGGCAAGTCGTTGGAAAACGAAGCCTGCACTCAAGGCCATTGTTAGCACCAAACAGGTCCCCCCTTGGCCTTCCATTTAGTGGGGGATAGATCTGGTAGGAGCATTCCCAATTAGCGGTTGGGCAAAAGCAGCATTCAATTATGGACTTAAGATTAAAAGTTTTATCATTCAAGAATAGTTATGAAGTCTAGGCATTCTACTTTTGGGGCATTAAGCTTCAAATATTCTTATATCCTTTTTTTTACCCCGTGCAATTTCAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

mRNA sequence

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

Coding sequence (CDS)

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGA

Protein sequence

MFICLFQRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNELEASLSRTSIQIREPGIEPS
Homology
[Close]
BLAST of CmaCh04G002610.1 vs. Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

[Close]
BLAST of CmaCh04G002610.1 vs. Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-35
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR KVKTTTP+T +LF +WK+KK  ER+AGLAA +AERAKNDRMSGRELF+A++S+FVDD
Sbjct: 227 QRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTS---AVDDSEDVLLDDDDDDDDELDLDE 126
           AEAY+ Y+R+E    +E+ +  N    P+SSTS    V++S+    D+D + DD+LD+DE
Sbjct: 287 AEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESD----DEDINIDDDLDIDE 346

Query: 127 LNELEASLSRTSIQIREPG 143
           LNELEASLSRTSIQIREPG
Sbjct: 347 LNELEASLSRTSIQIREPG 361

[Close]
BLAST of CmaCh04G002610.1 vs. Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-07
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAER-----AKNDRMSGRELFLANAS 66
           +RAK+  +TP+T E F +WK++K  +++      Q +R     A    MSGRE+F+ N  
Sbjct: 233 ERAKLTKSTPVTLETFLRWKEEKRLQKEKAAKDAQDKRLADIKAGKTSMSGREMFVFNPD 292

Query: 67  LFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDL 124
           LFVDD  A +   +E  ++++E  A  N       +   V  S+D   DDDDDDDDE   
Sbjct: 293 LFVDDESAIDTKSKEYEKSEEEIAALANQINTSLFTDGGVLPSDDDDDDDDDDDDDEDGD 352

[Close]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match: A0A0A0KQ23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175990 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.8e-54
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ER+AGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 225 ERAKVKTTTPITPELFFQWKKKKMDERNAGLAAQQAERAKNDRMSGRELFLANASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDNSTG P++ST+AVDDSED LL  D+DDDDELDLDELNE
Sbjct: 285 AEAYEKYQREEEPEADESKAKDNSTGGPSTSTNAVDDSEDDLL--DEDDDDELDLDELNE 344

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEA+LSRTSIQIREPGIE S
Sbjct: 345 LEATLSRTSIQIREPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match: A0A067FXF4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017965mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-44
Identity = 107/141 (75.89%), Postives = 120/141 (85.11%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR K+K+TTP+T ELF QWKKKKM ER+AGLAAQQAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 224 QRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNS-TGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELN 126
           AEA+E+Y REE    +EQK KD S T  P++S+ AV DSE++L   DDDDDDELDLDELN
Sbjct: 284 AEAFEEYHREEEAESNEQKGKDESATSGPSNSSGAVADSEEIL--PDDDDDDELDLDELN 343

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQI EPGIE S
Sbjct: 344 ELEASLSRTSIQICEPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match: V4TI73_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031903mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-44
Identity = 107/141 (75.89%), Postives = 120/141 (85.11%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR K+K+TTP+T ELF QWKKKKM ER+AGLAAQQAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 224 QRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNS-TGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELN 126
           AEA+E+Y REE    +EQK KD S T  P++S+ AV DSE++L   DDDDDDELDLDELN
Sbjct: 284 AEAFEEYHREEEAESNEQKGKDESATSGPSNSSGAVADSEEIL--PDDDDDDELDLDELN 343

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQI EPGIE S
Sbjct: 344 ELEASLSRTSIQICEPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match: W9RFQ8_9ROSA (Zinc finger CCCH domain-containing protein 11 OS=Morus notabilis GN=L484_017234 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QRAKVKTTTP+TP+LFFQWKKKK+ ERDAGLAAQQAERAKNDRMSGRELFL++ASLFVDD
Sbjct: 329 QRAKVKTTTPMTPDLFFQWKKKKIEERDAGLAAQQAERAKNDRMSGRELFLSDASLFVDD 388

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
            EAYEKY R+EP+  +E+ +   + G P++S+ A  DSE+V   D DDD+DELD+DELNE
Sbjct: 389 VEAYEKYTRQEPQHAEEKVSGSMAAGGPSTSSGAAADSEEV--SDVDDDEDELDMDELNE 448

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLS+TSIQIREPGIE S
Sbjct: 449 LEASLSKTSIQIREPGIEAS 466

[Close]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match: M5X9Q0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007639mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.6e-43
Identity = 105/141 (74.47%), Postives = 121/141 (85.82%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QRAKV T TP+T +LF QW+KKK  E++AGLA Q+AERAKNDRMSGRELFLA+AS+FVDD
Sbjct: 222 QRAKVTTCTPMTTDLFMQWRKKKTEEKEAGLAVQRAERAKNDRMSGRELFLADASVFVDD 281

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLL-DDDDDDDDELDLDELN 126
           AEAYEKYQR+EPEA  E+K KDNS     S++++V  SE+V + DDDDDDDDELDLDELN
Sbjct: 282 AEAYEKYQRQEPEA-AEEKVKDNSAAAGPSASTSVAGSEEVPIDDDDDDDDDELDLDELN 341

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQIREPGIE S
Sbjct: 342 ELEASLSRTSIQIREPGIEAS 361

[Close]
BLAST of CmaCh04G002610.1 vs. TAIR10
Match: AT2G20280.1 (AT2G20280.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-38
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: gi|659090100|ref|XP_008445838.1| (PREDICTED: zinc finger CCCH domain-containing protein 11 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 123/140 (87.86%), Postives = 131/140 (93.57%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ER+AGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 225 ERAKVKTTTPITPELFFQWKKKKMDERNAGLAAQQAERAKNDRMSGRELFLANASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDNSTG P++ST+AVDDSEDVLL  D+DDDDELDLDELNE
Sbjct: 285 AEAYEKYQREEEPEADESKAKDNSTGGPSTSTNAVDDSEDVLL--DEDDDDELDLDELNE 344

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEA+LSRTSIQIREPGIE S
Sbjct: 345 LEATLSRTSIQIREPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: gi|449451709|ref|XP_004143604.1| (PREDICTED: zinc finger CCCH domain-containing protein 11 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 8.3e-54
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ER+AGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 225 ERAKVKTTTPITPELFFQWKKKKMDERNAGLAAQQAERAKNDRMSGRELFLANASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDNSTG P++ST+AVDDSED LL  D+DDDDELDLDELNE
Sbjct: 285 AEAYEKYQREEEPEADESKAKDNSTGGPSTSTNAVDDSEDDLL--DEDDDDELDLDELNE 344

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEA+LSRTSIQIREPGIE S
Sbjct: 345 LEATLSRTSIQIREPGIEAS 362

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: gi|1009120805|ref|XP_015877122.1| (PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-44
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QRAKV TTTP+TPELF QWKKKKM ERDAGLAAQ+AERAKNDRMSGRELFL++ASLFVDD
Sbjct: 226 QRAKVTTTTPMTPELFLQWKKKKMEERDAGLAAQRAERAKNDRMSGRELFLSDASLFVDD 285

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGR-PTSSTSAVDDSEDVLLDDDDDDDDELDLDELN 126
           AEAYEKY REEPE   E+KA+DN+    P++S+SAV  SE+    DDDDDDDELD+DELN
Sbjct: 286 AEAYEKYLREEPEVA-ERKAQDNTAVEGPSASSSAVAGSEEAP-PDDDDDDDELDMDELN 345

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQIREPGIE S
Sbjct: 346 ELEASLSRTSIQIREPGIEAS 364

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: gi|1009120809|ref|XP_015877124.1| (PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-44
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QRAKV TTTP+TPELF QWKKKKM ERDAGLAAQ+AERAKNDRMSGRELFL++ASLFVDD
Sbjct: 225 QRAKVTTTTPMTPELFLQWKKKKMEERDAGLAAQRAERAKNDRMSGRELFLSDASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGR-PTSSTSAVDDSEDVLLDDDDDDDDELDLDELN 126
           AEAYEKY REEPE   E+KA+DN+    P++S+SAV  SE+    DDDDDDDELD+DELN
Sbjct: 285 AEAYEKYLREEPEVA-ERKAQDNTAVEGPSASSSAVAGSEEAP-PDDDDDDDELDMDELN 344

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQIREPGIE S
Sbjct: 345 ELEASLSRTSIQIREPGIEAS 363

[Close]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match: gi|567887338|ref|XP_006436191.1| (hypothetical protein CICLE_v10031903mg [Citrus clementina])

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 107/141 (75.89%), Postives = 120/141 (85.11%), Query Frame = 1 

Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR K+K+TTP+T ELF QWKKKKM ER+AGLAAQQAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 224 QRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNS-TGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELN 126
           AEA+E+Y REE    +EQK KD S T  P++S+ AV DSE++L   DDDDDDELDLDELN
Sbjct: 284 AEAFEEYHREEEAESNEQKGKDESATSGPSNSSGAVADSEEIL--PDDDDDDELDLDELN 343

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQI EPGIE S
Sbjct: 344 ELEASLSRTSIQICEPGIEAS 362

The following BLAST results are available for this feature:
BLAST of CmaCh04G002610.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H21_ARATH5.4e-3764.58Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g202... [more]
C3H11_ORYSJ5.1e-3562.59Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN... [more]
ZC3HF_DICDI2.0e-0736.89Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideu... [more]
BLAST of CmaCh04G002610.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ23_CUCSA5.8e-5487.14Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175990 PE=4 SV=1[more]
A0A067FXF4_CITSI9.3e-4475.89Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017965mg PE=4 SV=1[more]
V4TI73_9ROSI9.3e-4475.89Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031903mg PE=4 SV=1[more]
W9RFQ8_9ROSA1.2e-4373.57Zinc finger CCCH domain-containing protein 11 OS=Morus notabilis GN=L484_017234 ... [more]
M5X9Q0_PRUPE4.6e-4374.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007639mg PE=4 SV=1[more]
BLAST of CmaCh04G002610.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20280.13.0e-3864.58 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CmaCh04G002610.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090100|ref|XP_008445838.1|1.3e-5487.86PREDICTED: zinc finger CCCH domain-containing protein 11 [Cucumis melo][more]
gi|449451709|ref|XP_004143604.1|8.3e-5487.14PREDICTED: zinc finger CCCH domain-containing protein 11 [Cucumis sativus][more]
gi|1009120805|ref|XP_015877122.1|2.1e-4478.72PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X1 [Ziziphus ju... [more]
gi|1009120809|ref|XP_015877124.1|2.1e-4478.72PREDICTED: zinc finger CCCH domain-containing protein 11 isoform X2 [Ziziphus ju... [more]
gi|567887338|ref|XP_006436191.1|1.3e-4375.89hypothetical protein CICLE_v10031903mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G002610CmaCh04G002610gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1CmaCh04G002610.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1.exon.1CmaCh04G002610.1.exon.1exon
CmaCh04G002610.1.exon.2CmaCh04G002610.1.exon.2exon
CmaCh04G002610.1.exon.3CmaCh04G002610.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1.CDS.1CmaCh04G002610.1.CDS.1CDS
CmaCh04G002610.1.CDS.2CmaCh04G002610.1.CDS.2CDS
CmaCh04G002610.1.CDS.3CmaCh04G002610.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002610.1.three_prime_UTR.1CmaCh04G002610.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 7..146
score: 1.2
NoneNo IPR availablePANTHERPTHR12681:SF4SUBFAMILY NOT NAMEDcoord: 7..146
score: 1.2