CmaCh04G001000.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G001000.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Two-component response regulator
Location	Cma_Chr04 : 495945 .. 496885 (-)
Sequence length	546

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTCTAACCCTAAATTTAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGGTAAAAATACAAAAGTTTTCATTTTTTTTCATTGAAAACAGAATTTGAGAATCTGGGCAAGAAAAAAAAAGCAATCTTTTTGTTTGTTTGGTTGTTTGTTTGTTTGTTTGTGCAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTGTAAGTTAAAGATTGTGTTTGGTTGGTGAGAAAACGAAGGAAAATCCCCCAGAAAATTGGAGATGTTTTAATGGAATCTTTGTCGTGTTATTGCAGAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGGTTCCATTTTTTTTTTTTAATTCTTTCTTAAATTTATAGAAAAAAAAAAAAAAAAAAAAAACTTGTTTGTGTTGCAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTTAGTTAATTTAGTTAATTTAGTTAATTTAGTTAATTTAAATCCATCCATCTTTATCCATACTATTATACTTTTTAAAAAATTAATAAAAATAATTAATTGGTTAGGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

mRNA sequence

TTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTCTAACCCTAAATTTAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

Coding sequence (CDS)

ATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

Protein sequence

MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCX

Homology

[Close]

BLAST of CmaCh04G001000.1 vs. Swiss-Prot
Match: ARR17_ARATH (Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-43
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE++LK SS KVTTAENG  ALE+LGL D  + +          KV
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTD----SLTNVMKV 80

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           N+IITDYCMPGM+G+ELLKK+K  S +KEVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 81  NLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPL 140

Query: 136 KQSDVVKLKC 146
           K SDV KLKC
Sbjct: 141 KLSDVEKLKC 146

[Close]

BLAST of CmaCh04G001000.1 vs. Swiss-Prot
Match: ARR16_ARATH (Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE+LLK S  KVTTAEN   ALE+LGL D+++H  + + C    KV
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHI-DALTC-NVMKV 89

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           ++IITDYCMPGM+G+ELLKK+K  S ++EVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 90  SLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPL 149

Query: 136 KQSDVVKLKC 146
           K +DV KLKC
Sbjct: 150 KLADVEKLKC 157

[Close]

BLAST of CmaCh04G001000.1 vs. Swiss-Prot
Match: ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000.1 vs. Swiss-Prot
Match: ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000.1 vs. Swiss-Prot
Match: ORR10_ORYSJ (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000.1 vs. TrEMBL
Match: A0A0A0KMB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223020 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-59
Identity = 129/159 (81.13%), Postives = 134/159 (84.28%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVG----RSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVP 120
           LEFLGLLDEH ++H N E       RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVP
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNEWQQRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVP 120

Query: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 158

[Close]

BLAST of CmaCh04G001000.1 vs. TrEMBL
Match: C6SX49_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G223000 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 3   AAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE 62
           AA SSS+   ++G  PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  ALE LGL   
Sbjct: 2   AASSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSG 61

Query: 63  HEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRI 122
            ++  N     GRSKVNMIITDYCMPGM+GYELLKKIK  S MKEVPVV++SSEN+PTRI
Sbjct: 62  GQNNMN-----GRSKVNMIITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRI 121

Query: 123 NKCLEEGAEMFMLKPLKQSDVVKLKC 146
           NKCLEEGA+MF+LKPLKQSDV KL C
Sbjct: 122 NKCLEEGAQMFILKPLKQSDVRKLTC 142

[Close]

BLAST of CmaCh04G001000.1 vs. TrEMBL
Match: V4T7K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 8   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 67

Query: 63  EHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKC 122
           + NN+   G +KVN++ITDYCMPGM+GYELLKKIK  S MKEVPVVVVSSEN+PTRIN+C
Sbjct: 68  Q-NNLNSNG-TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 127

Query: 123 LEEGAEMFMLKPLKQSDVVKL 144
           LEEGA+MFMLKPLK SDV KL
Sbjct: 128 LEEGAQMFMLKPLKPSDVKKL 146

[Close]

BLAST of CmaCh04G001000.1 vs. TrEMBL
Match: A0A067FMZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 9   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 68

Query: 63  EHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKC 122
           + NN+   G +KVN++ITDYCMPGM+GYELLKKIK  S MKEVPVVVVSSEN+PTRIN+C
Sbjct: 69  Q-NNLNSNG-TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 128

Query: 123 LEEGAEMFMLKPLKQSDVVKL 144
           LEEGA+MFMLKPLK SDV KL
Sbjct: 129 LEEGAQMFMLKPLKPSDVKKL 147

[Close]

BLAST of CmaCh04G001000.1 vs. TrEMBL
Match: A0A0B2QW54_GLYSO (Two-component response regulator ARR17 OS=Glycine soja GN=glysoja_038301 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 106/146 (72.60%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 3   AAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE 62
           AAGSSS+   ++G  PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  ALE LGL   
Sbjct: 2   AAGSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSG 61

Query: 63  HEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRI 122
            ++  N     GRSKVNM+ITDYCMPGM+GYELLKKIK  S  KEVPVV++SSEN+PTRI
Sbjct: 62  GQNTMN-----GRSKVNMVITDYCMPGMTGYELLKKIKESSVTKEVPVVIMSSENIPTRI 121

Query: 123 NKCLEEGAEMFMLKPLKQSDVVKLKC 146
           NKCLEEGA+MF+LKPLKQSDV KL C
Sbjct: 122 NKCLEEGAQMFILKPLKQSDVKKLTC 142

[Close]

BLAST of CmaCh04G001000.1 vs. TAIR10
Match: AT3G56380.1 (AT3G56380.1 response regulator 17)

HSP 1 Score: 176.8 bits (447), Expect = 9.8e-45
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE++LK SS KVTTAENG  ALE+LGL D  + +          KV
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTD----SLTNVMKV 80

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           N+IITDYCMPGM+G+ELLKK+K  S +KEVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 81  NLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPL 140

Query: 136 KQSDVVKLKC 146
           K SDV KLKC
Sbjct: 141 KLSDVEKLKC 146

[Close]

BLAST of CmaCh04G001000.1 vs. TAIR10
Match: AT2G40670.2 (AT2G40670.2 response regulator 16)

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE+LLK S  KVTTAEN   ALE+LGL D+++H  + + C    KV
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHI-DALTC-NVMKV 89

Query: 76  NMIITDYCMPGMSGYELLKKIKR-CSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKP 135
           ++IITDYCMPGM+G+ELLKK+K+  S ++EVPVV++SSEN+PTRINKCL  GA+MFM KP
Sbjct: 90  SLIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKP 149

Query: 136 LKQSDVVKLKC 146
           LK +DV KLKC
Sbjct: 150 LKLADVEKLKC 158

[Close]

BLAST of CmaCh04G001000.1 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-37
Identity = 79/131 (60.31%), Postives = 102/131 (77.86%), Query Frame = 1


Query: 14  QPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRS 73
           Q HVLAVDD+LVDR ++E+LL+ +S KVT  ++G  ALEFLGL D+      +     R 
Sbjct: 32  QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFD-----RL 91

Query: 74  KVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLK 133
           KV++IITDYCMPGM+GYELLKKIK  +  KEVPVV++SSENV TRI++CLEEGAE F+LK
Sbjct: 92  KVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLK 151

Query: 134 PLKQSDVVKLK 145
           P+K +DV +L+
Sbjct: 152 PVKLADVKRLR 157

[Close]

BLAST of CmaCh04G001000.1 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-37
Identity = 76/138 (55.07%), Postives = 103/138 (74.64%), Query Frame = 1


Query: 14  QPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRS 73
           Q HVLAVDD+L DRKL+E+LL+ SS +VTT ++G  ALEFLGL      + N+     ++
Sbjct: 8   QFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGL--RQSTDSNDPNAFSKA 67

Query: 74  -------KVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEG 133
                  +VN+IITDYCMPGM+GY+LLKK+K  S  +++PVV++SSENVP RI++CLEEG
Sbjct: 68  PVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEG 127

Query: 134 AEMFMLKPLKQSDVVKLK 145
           AE F LKP++ +D+ KLK
Sbjct: 128 AEEFFLKPVRLADLNKLK 143

[Close]

BLAST of CmaCh04G001000.1 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-37
Identity = 75/138 (54.35%), Postives = 103/138 (74.64%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL-LDEHEHE--------HNN 75
           HVLAVDD+L DRK++E+LL+ SS +VTT ++G  ALEFLGL +D+++          H  
Sbjct: 10  HVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQE 69

Query: 76  IECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEG 135
           +E      +N+IITDYCMPGM+GY+LLKK+K  +  + +PVV++SSENVP RI++CLEEG
Sbjct: 70  VE------INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEG 129

Query: 136 AEMFMLKPLKQSDVVKLK 145
           AE F LKP+K +D+ KLK
Sbjct: 130 AEEFFLKPVKLADLTKLK 141

[Close]

BLAST of CmaCh04G001000.1 vs. NCBI nr
Match: gi|778701578|ref|XP_011655050.1| (PREDICTED: two-component response regulator ARR17 isoform X2 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.1e-61
Identity = 129/155 (83.23%), Postives = 134/155 (86.45%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVV 120
           LEFLGLLDEH ++H N E   RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVPVVVV
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVPVVVV 120

Query: 121 SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 154

[Close]

BLAST of CmaCh04G001000.1 vs. NCBI nr
Match: gi|449457395|ref|XP_004146434.1| (PREDICTED: two-component response regulator ARR17 isoform X1 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 129/159 (81.13%), Postives = 134/159 (84.28%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVG----RSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVP 120
           LEFLGLLDEH ++H N E       RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVP
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNEWQQRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVP 120

Query: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 158

[Close]

BLAST of CmaCh04G001000.1 vs. NCBI nr
Match: gi|1012256750|ref|XP_015945037.1| (PREDICTED: two-component response regulator ARR17-like [Arachis duranensis])

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-50
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAATPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVS 120
           EFLGL D  ++  N     GRSKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++S
Sbjct: 61  EFLGLTDSEQNAMN-----GRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMS 120

Query: 121 SENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SEN+PTRIN+CLEEGA+MFMLKPLKQSDV KL C
Sbjct: 121 SENIPTRINQCLEEGAQMFMLKPLKQSDVKKLTC 149

[Close]

BLAST of CmaCh04G001000.1 vs. NCBI nr
Match: gi|1021576127|ref|XP_016179276.1| (PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis])

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-50
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAAAPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVS 120
           EFLGL D  ++  N     GRSKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++S
Sbjct: 61  EFLGLTDSEQNAMN-----GRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMS 120

Query: 121 SENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SEN+PTRIN+CLEEGA+MFMLKPLKQSDV KL C
Sbjct: 121 SENIPTRINQCLEEGAQMFMLKPLKQSDVKKLTC 149

[Close]

BLAST of CmaCh04G001000.1 vs. NCBI nr
Match: gi|694373205|ref|XP_009363791.1| (PREDICTED: two-component response regulator ARR17 [Pyrus x bretschneideri])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 108/148 (72.97%), Postives = 122/148 (82.43%), Query Frame = 1


Query: 1   MEAAGSSSSQ----NGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL 60
           MEAA SSSS+    N  QPHVLAVDD+LVDRKL+EKLL N S KVTTAENG SALEFLGL
Sbjct: 1   MEAASSSSSKGFMANVEQPHVLAVDDSLVDRKLIEKLLTNLSCKVTTAENGASALEFLGL 60

Query: 61  LDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVP 120
            D+H    +N   V  SKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++SSEN+P
Sbjct: 61  GDQHNSLESN---VSNSKVNLVITDYCMPGMTGYELLKKIKESSIMKEVPVVIMSSENIP 120

Query: 121 TRINKCLEEGAEMFMLKPLKQSDVVKLK 145
            RINKCLEEGA+MFMLKPLKQSD+ KL+
Sbjct: 121 NRINKCLEEGAQMFMLKPLKQSDMKKLR 145

The following BLAST results are available for this feature:

BLAST of CmaCh04G001000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARR17_ARATH	1.7e-43	68.46	Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=...	[more]
ARR16_ARATH	2.5e-42	66.92	Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=...	[more]
ORR9_ORYSI	2.0e-39	60.61	Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 ...	[more]
ORR9_ORYSJ	2.0e-39	60.61	Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=...	[more]
ORR10_ORYSJ	2.0e-39	60.61	Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 P...	[more]

BLAST of CmaCh04G001000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMB0_CUCSA	1.2e-59	81.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223020 PE=4 SV=1	[more]
C6SX49_SOYBN	9.6e-49	73.29	Uncharacterized protein OS=Glycine max GN=GLYMA_04G223000 PE=2 SV=1	[more]
V4T7K2_9ROSI	9.6e-49	73.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1	[more]
A0A067FMZ9_CITSI	9.6e-49	73.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1	[more]
A0A0B2QW54_GLYSO	1.2e-48	72.60	Two-component response regulator ARR17 OS=Glycine soja GN=glysoja_038301 PE=4 SV...	[more]

BLAST of CmaCh04G001000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56380.1	9.8e-45	68.46	response regulator 17	[more]
AT2G40670.2	2.7e-42	66.41	response regulator 16	[more]
AT1G59940.1	5.7e-37	60.31	response regulator 3	[more]
AT3G57040.1	7.5e-37	55.07	response regulator 9	[more]
AT2G41310.1	9.8e-37	54.35	response regulator 3	[more]

BLAST of CmaCh04G001000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701578\|ref\|XP_011655050.1\|	3.1e-61	83.23	PREDICTED: two-component response regulator ARR17 isoform X2 [Cucumis sativus]	[more]
gi\|449457395\|ref\|XP_004146434.1\|	1.7e-59	81.13	PREDICTED: two-component response regulator ARR17 isoform X1 [Cucumis sativus]	[more]
gi\|1012256750\|ref\|XP_015945037.1\|	2.5e-50	70.13	PREDICTED: two-component response regulator ARR17-like [Arachis duranensis]	[more]
gi\|1021576127\|ref\|XP_016179276.1\|	2.5e-50	70.13	PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis]	[more]
gi\|694373205\|ref\|XP_009363791.1\|	1.6e-49	72.97	PREDICTED: two-component response regulator ARR17 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR011006	CheY-like_superfamily

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G001000	CmaCh04G001000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G001000.1	CmaCh04G001000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G001000.1.CDS.5	CmaCh04G001000.1.CDS.5	CDS
CmaCh04G001000.1.CDS.4	CmaCh04G001000.1.CDS.4	CDS
CmaCh04G001000.1.CDS.3	CmaCh04G001000.1.CDS.3	CDS
CmaCh04G001000.1.CDS.2	CmaCh04G001000.1.CDS.2	CDS
CmaCh04G001000.1.CDS.1	CmaCh04G001000.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G001000.1.five_prime_UTR.1	CmaCh04G001000.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G001000.1.exon.5	CmaCh04G001000.1.exon.5	exon
CmaCh04G001000.1.exon.4	CmaCh04G001000.1.exon.4	exon
CmaCh04G001000.1.exon.3	CmaCh04G001000.1.exon.3	exon
CmaCh04G001000.1.exon.2	CmaCh04G001000.1.exon.2	exon
CmaCh04G001000.1.exon.1	CmaCh04G001000.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 17..142 score: 1.8
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 15..144 score: 1.1
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 16..146 score: 33
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 15..141 score: 5.98
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 14..142 score: 4.2
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 15..54 score: 1.1E-69coord: 71..145 score: 1.1
None	No IPR available	PANTHER	PTHR26402:SF521	TWO-COMPONENT RESPONSE REGULATOR ARR16-RELATED	coord: 15..54 score: 1.1E-69coord: 71..145 score: 1.1