CmaCh03G000670.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000670.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ycf2 protein
Location	Cma_Chr03 : 630995 .. 631753 (-)
Sequence length	651

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAATAACGAATCATTGGTTTAACTGAATAAACGAATCATTGGTTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTGTTGATTCATCACTAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

mRNA sequence

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Coding sequence (CDS)

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Protein sequence

MTKTLLRKRWLFPDEIIWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFELWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMFVAICYNHSKGFRVS

Homology

[Close]

BLAST of CmaCh03G000670.1 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-100
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. Swiss-Prot
Match: YCF2_CARPA (Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.8e-98
Identity = 177/196 (90.31%), Postives = 178/196 (90.82%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DE+     NDSEFLQSGTVQYQTRDR
Sbjct: 2098 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEKDELQANDSEFLQSGTVQYQTRDR 2157

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2158 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2217

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ
Sbjct: 2218 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 2277

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2278 MTKTLLRKRWLFPDEM 2293

[Close]

BLAST of CmaCh03G000670.1 vs. Swiss-Prot
Match: YCF2_EUCGG (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.3e-97
Identity = 175/196 (89.29%), Postives = 176/196 (89.80%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2080 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDEKEELQENDSEFLQSGTMQYQTRDR 2139

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2140 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDSPTSI 2199

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ
Sbjct: 2200 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQ 2259

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2260 MTKTLLRKRWLFPDEM 2275

[Close]

BLAST of CmaCh03G000670.1 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-96
Identity = 173/204 (84.80%), Postives = 180/204 (88.24%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IW PWGFLFDCIERPNELGFPYWARSFRGKRII DEE     NDSEFLQ GT+QYQT+DR
Sbjct: 2091 IWCPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQGGTMQYQTQDR 2150

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDP DPLFFLFKDQPFVSVFSHREFFADEE+S+GLLT QTDLP  I
Sbjct: 2151 SSKEQGFFRISQFIWDPTDPLFFLFKDQPFVSVFSHREFFADEEISRGLLTFQTDLPTSI 2210

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTN+SLSNGFFRSNT SESYQYLSN+FLSNGTLLDQ
Sbjct: 2211 YKRWFIKNTQEKHFELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLDQ 2270

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2271 MTKTLLRKRWLFPDEMVVAICSNN 2294

[Close]

BLAST of CmaCh03G000670.1 vs. Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.4e-95
Identity = 173/196 (88.27%), Postives = 174/196 (88.78%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIER NELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2100 IWRPWGFLFDCIERTNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2159

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2160 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2219

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNG FRSNTPSESYQYLSNLFLSN  LLDQ
Sbjct: 2220 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNARLLDQ 2279

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2280 MTKTLLRKRWLFPDEM 2295

[Close]

BLAST of CmaCh03G000670.1 vs. TrEMBL
Match: E5KUD9_CORLA (Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.6e-100
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670.1 vs. TrEMBL
Match: A0A0A0YSN3_9ROSA (Protein Ycf2 OS=Morus mongolica GN=ycf2 PE=3 SV=2)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. TrEMBL
Match: A0A0F6ZDP6_9ROSA (Protein Ycf2 OS=Morus notabilis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. TrEMBL
Match: A0A159YMX4_MORAL (Hypothetical chloroplast RF21 OS=Morus alba var. multicaulis GN=ycf2 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. TrEMBL
Match: A0A158V0L0_9FABA (Hypothetical chloroplast RF21 OS=Indigofera tinctoria GN=ycf2 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.2e-97
Identity = 179/204 (87.75%), Postives = 182/204 (89.22%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DEE     NDSEFLQ GT+QYQTRDR
Sbjct: 1956 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEGELQENDSEFLQGGTMQYQTRDR 2015

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMS+GLLTSQTDLP  I
Sbjct: 2016 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSRGLLTSQTDLPTSI 2075

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFI N QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLFLSNGTLLDQ
Sbjct: 2076 YKRWFINNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQ 2135

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2136 MTKTLLRKRWLFPDEMVVAICSNN 2159

[Close]

BLAST of CmaCh03G000670.1 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 333.2 bits (853), Expect = 1.2e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

[Close]

BLAST of CmaCh03G000670.1 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 333.2 bits (853), Expect = 1.2e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: gi|317046216|ref|YP_004072505.1| (Ycf2 protein [Corynocarpus laevigata])

HSP 1 Score: 372.1 bits (954), Expect = 6.6e-100
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: gi|821318599|ref|YP_009139722.1| (hypothetical chloroplast RF21 (chloroplast) [Morus notabilis])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: gi|746948362|ref|YP_009110396.1| (hypothetical chloroplast RF21 (chloroplast) [Morus mongolica])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2087 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2146

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2147 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2206

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2207 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2266

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2267 MTKTLLRKRWLFPDEMVLAICYNN 2290

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: gi|114804307|ref|YP_762304.1| (hypothetical chloroplast RF2 [Morus indica])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: gi|813427825|ref|YP_009132980.1| (Ycf2 (chloroplast) [Hibiscus syriacus])

HSP 1 Score: 362.1 bits (928), Expect = 6.9e-97
Identity = 179/204 (87.75%), Postives = 181/204 (88.73%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWA SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2086 IWRPWGFLFDCIERPNELGFPYWAGSFRGKRIIYDEKDELQENDSEFLQSGTMQYQARDR 2145

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2146 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2205

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ
Sbjct: 2206 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQ 2265

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2266 MTKTLLRKRWLFPDEMVVAICSNN 2289

The following BLAST results are available for this feature:

BLAST of CmaCh03G000670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_MORIN	1.3e-100	88.24	Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1	[more]
YCF2_CARPA	4.8e-98	90.31	Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1	[more]
YCF2_EUCGG	5.3e-97	89.29	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1	[more]
YCF2_LOTJA	2.0e-96	84.80	Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1	[more]
YCF2_VITVI	6.4e-95	88.27	Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh03G000670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5KUD9_CORLA	4.6e-100	90.55	Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1	[more]
A0A0A0YSN3_9ROSA	1.5e-98	88.24	Protein Ycf2 OS=Morus mongolica GN=ycf2 PE=3 SV=2	[more]
A0A0F6ZDP6_9ROSA	1.5e-98	88.24	Protein Ycf2 OS=Morus notabilis GN=ycf2 PE=3 SV=1	[more]
A0A159YMX4_MORAL	1.5e-98	88.24	Hypothetical chloroplast RF21 OS=Morus alba var. multicaulis GN=ycf2 PE=4 SV=1	[more]
A0A158V0L0_9FABA	2.2e-97	87.75	Hypothetical chloroplast RF21 OS=Indigofera tinctoria GN=ycf2 PE=4 SV=1	[more]

BLAST of CmaCh03G000670.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-91	85.71	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-91	85.71	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmaCh03G000670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|317046216\|ref\|YP_004072505.1\|	6.6e-100	90.55	Ycf2 protein [Corynocarpus laevigata]	[more]
gi\|821318599\|ref\|YP_009139722.1\|	2.1e-98	88.24	hypothetical chloroplast RF21 (chloroplast) [Morus notabilis]	[more]
gi\|746948362\|ref\|YP_009110396.1\|	2.1e-98	88.24	hypothetical chloroplast RF21 (chloroplast) [Morus mongolica]	[more]
gi\|114804307\|ref\|YP_762304.1\|	2.1e-98	88.24	hypothetical chloroplast RF2 [Morus indica]	[more]
gi\|813427825\|ref\|YP_009132980.1\|	6.9e-97	87.75	Ycf2 (chloroplast) [Hibiscus syriacus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G000670	CmaCh03G000670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1	CmaCh03G000670.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1.CDS.3	CmaCh03G000670.1.CDS.3	CDS
CmaCh03G000670.1.CDS.2	CmaCh03G000670.1.CDS.2	CDS
CmaCh03G000670.1.CDS.1	CmaCh03G000670.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1.exon.3	CmaCh03G000670.1.exon.3	exon
CmaCh03G000670.1.exon.2	CmaCh03G000670.1.exon.2	exon
CmaCh03G000670.1.exon.1	CmaCh03G000670.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 17..206 score: 5.3E