CmaCh03G000670 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ycf2 protein
Location	Cma_Chr03 : 630995 .. 631753 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAATAACGAATCATTGGTTTAACTGAATAAACGAATCATTGGTTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTGTTGATTCATCACTAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

mRNA sequence

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Coding sequence (CDS)

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Protein sequence

MTKTLLRKRWLFPDEIIWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFELWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMFVAICYNHSKGFRVS

Homology

[Close]

BLAST of CmaCh03G000670 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-100
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. Swiss-Prot
Match: YCF2_CARPA (Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.8e-98
Identity = 177/196 (90.31%), Postives = 178/196 (90.82%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DE+     NDSEFLQSGTVQYQTRDR
Sbjct: 2098 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEKDELQANDSEFLQSGTVQYQTRDR 2157

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2158 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2217

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ
Sbjct: 2218 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 2277

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2278 MTKTLLRKRWLFPDEM 2293

[Close]

BLAST of CmaCh03G000670 vs. Swiss-Prot
Match: YCF2_EUCGG (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.3e-97
Identity = 175/196 (89.29%), Postives = 176/196 (89.80%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2080 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDEKEELQENDSEFLQSGTMQYQTRDR 2139

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2140 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDSPTSI 2199

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ
Sbjct: 2200 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQ 2259

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2260 MTKTLLRKRWLFPDEM 2275

[Close]

BLAST of CmaCh03G000670 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-96
Identity = 173/204 (84.80%), Postives = 180/204 (88.24%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IW PWGFLFDCIERPNELGFPYWARSFRGKRII DEE     NDSEFLQ GT+QYQT+DR
Sbjct: 2091 IWCPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQGGTMQYQTQDR 2150

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDP DPLFFLFKDQPFVSVFSHREFFADEE+S+GLLT QTDLP  I
Sbjct: 2151 SSKEQGFFRISQFIWDPTDPLFFLFKDQPFVSVFSHREFFADEEISRGLLTFQTDLPTSI 2210

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTN+SLSNGFFRSNT SESYQYLSN+FLSNGTLLDQ
Sbjct: 2211 YKRWFIKNTQEKHFELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLDQ 2270

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2271 MTKTLLRKRWLFPDEMVVAICSNN 2294

[Close]

BLAST of CmaCh03G000670 vs. Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.4e-95
Identity = 173/196 (88.27%), Postives = 174/196 (88.78%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIER NELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2100 IWRPWGFLFDCIERTNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2159

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2160 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2219

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNG FRSNTPSESYQYLSNLFLSN  LLDQ
Sbjct: 2220 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNARLLDQ 2279

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2280 MTKTLLRKRWLFPDEM 2295

[Close]

BLAST of CmaCh03G000670 vs. TrEMBL
Match: E5KUD9_CORLA (Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.6e-100
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670 vs. TrEMBL
Match: A0A0A0YSN3_9ROSA (Protein Ycf2 OS=Morus mongolica GN=ycf2 PE=3 SV=2)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. TrEMBL
Match: A0A0F6ZDP6_9ROSA (Protein Ycf2 OS=Morus notabilis GN=ycf2 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. TrEMBL
Match: A0A159YMX4_MORAL (Hypothetical chloroplast RF21 OS=Morus alba var. multicaulis GN=ycf2 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. TrEMBL
Match: A0A158V0L0_9FABA (Hypothetical chloroplast RF21 OS=Indigofera tinctoria GN=ycf2 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.2e-97
Identity = 179/204 (87.75%), Postives = 182/204 (89.22%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DEE     NDSEFLQ GT+QYQTRDR
Sbjct: 1956 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEGELQENDSEFLQGGTMQYQTRDR 2015

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMS+GLLTSQTDLP  I
Sbjct: 2016 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSRGLLTSQTDLPTSI 2075

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFI N QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLFLSNGTLLDQ
Sbjct: 2076 YKRWFINNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQ 2135

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2136 MTKTLLRKRWLFPDEMVVAICSNN 2159

[Close]

BLAST of CmaCh03G000670 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 333.2 bits (853), Expect = 1.2e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

[Close]

BLAST of CmaCh03G000670 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 333.2 bits (853), Expect = 1.2e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

[Close]

BLAST of CmaCh03G000670 vs. NCBI nr
Match: gi|317046216|ref|YP_004072505.1| (Ycf2 protein [Corynocarpus laevigata])

HSP 1 Score: 372.1 bits (954), Expect = 6.6e-100
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670 vs. NCBI nr
Match: gi|821318599|ref|YP_009139722.1| (hypothetical chloroplast RF21 (chloroplast) [Morus notabilis])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. NCBI nr
Match: gi|746948362|ref|YP_009110396.1| (hypothetical chloroplast RF21 (chloroplast) [Morus mongolica])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2087 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2146

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2147 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2206

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2207 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2266

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2267 MTKTLLRKRWLFPDEMVLAICYNN 2290

[Close]

BLAST of CmaCh03G000670 vs. NCBI nr
Match: gi|114804307|ref|YP_762304.1| (hypothetical chloroplast RF2 [Morus indica])

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-98
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DEE     NDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670 vs. NCBI nr
Match: gi|813427825|ref|YP_009132980.1| (Ycf2 (chloroplast) [Hibiscus syriacus])

HSP 1 Score: 362.1 bits (928), Expect = 6.9e-97
Identity = 179/204 (87.75%), Postives = 181/204 (88.73%), Query Frame = 1


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWA SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2086 IWRPWGFLFDCIERPNELGFPYWAGSFRGKRIIYDEKDELQENDSEFLQSGTMQYQARDR 2145

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2146 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2205

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ
Sbjct: 2206 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQ 2265

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2266 MTKTLLRKRWLFPDEMVVAICSNN 2289

The following BLAST results are available for this feature:

BLAST of CmaCh03G000670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_MORIN	1.3e-100	88.24	Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1	[more]
YCF2_CARPA	4.8e-98	90.31	Protein Ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1	[more]
YCF2_EUCGG	5.3e-97	89.29	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1	[more]
YCF2_LOTJA	2.0e-96	84.80	Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1	[more]
YCF2_VITVI	6.4e-95	88.27	Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh03G000670 vs. TrEMBL


Match Name	E-value	Identity	Description
E5KUD9_CORLA	4.6e-100	90.55	Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1	[more]
A0A0A0YSN3_9ROSA	1.5e-98	88.24	Protein Ycf2 OS=Morus mongolica GN=ycf2 PE=3 SV=2	[more]
A0A0F6ZDP6_9ROSA	1.5e-98	88.24	Protein Ycf2 OS=Morus notabilis GN=ycf2 PE=3 SV=1	[more]
A0A159YMX4_MORAL	1.5e-98	88.24	Hypothetical chloroplast RF21 OS=Morus alba var. multicaulis GN=ycf2 PE=4 SV=1	[more]
A0A158V0L0_9FABA	2.2e-97	87.75	Hypothetical chloroplast RF21 OS=Indigofera tinctoria GN=ycf2 PE=4 SV=1	[more]

BLAST of CmaCh03G000670 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-91	85.71	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-91	85.71	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmaCh03G000670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|317046216\|ref\|YP_004072505.1\|	6.6e-100	90.55	Ycf2 protein [Corynocarpus laevigata]	[more]
gi\|821318599\|ref\|YP_009139722.1\|	2.1e-98	88.24	hypothetical chloroplast RF21 (chloroplast) [Morus notabilis]	[more]
gi\|746948362\|ref\|YP_009110396.1\|	2.1e-98	88.24	hypothetical chloroplast RF21 (chloroplast) [Morus mongolica]	[more]
gi\|114804307\|ref\|YP_762304.1\|	2.1e-98	88.24	hypothetical chloroplast RF2 [Morus indica]	[more]
gi\|813427825\|ref\|YP_009132980.1\|	6.9e-97	87.75	Ycf2 (chloroplast) [Hibiscus syriacus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G000670.1	CmaCh03G000670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 17..206 score: 5.3E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G000670	Cucumber (Gy14) v2	cgybcmaB531
CmaCh03G000670	Cucumber (Gy14) v2	cgybcmaB538
CmaCh03G000670	Melon (DHL92) v3.6.1	cmamedB701
CmaCh03G000670	Melon (DHL92) v3.6.1	cmamedB708
CmaCh03G000670	Silver-seed gourd	carcmaB0266
CmaCh03G000670	Silver-seed gourd	carcmaB0397
CmaCh03G000670	Cucumber (Chinese Long) v3	cmacucB0794
CmaCh03G000670	Cucumber (Chinese Long) v3	cmacucB0801
CmaCh03G000670	Watermelon (97103) v2	cmawmbB691
CmaCh03G000670	Watermelon (97103) v2	cmawmbB694
CmaCh03G000670	Wax gourd	cmawgoB0795
CmaCh03G000670	Wax gourd	cmawgoB0802
CmaCh03G000670	Wax gourd	cmawgoB0805
CmaCh03G000670	Cucurbita maxima (Rimu)	cmacmaB530
CmaCh03G000670	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G000670	Cucurbita moschata (Rifu)	cmacmoB674
CmaCh03G000670	Wild cucumber (PI 183967)	cmacpiB674
CmaCh03G000670	Wild cucumber (PI 183967)	cmacpiB681
CmaCh03G000670	Cucumber (Chinese Long) v2	cmacuB666
CmaCh03G000670	Cucumber (Chinese Long) v2	cmacuB673
CmaCh03G000670	Melon (DHL92) v3.5.1	cmameB613
CmaCh03G000670	Melon (DHL92) v3.5.1	cmameB621
CmaCh03G000670	Watermelon (Charleston Gray)	cmawcgB586
CmaCh03G000670	Watermelon (Charleston Gray)	cmawcgB592
CmaCh03G000670	Watermelon (Charleston Gray)	cmawcgB595
CmaCh03G000670	Watermelon (97103) v1	cmawmB635
CmaCh03G000670	Watermelon (97103) v1	cmawmB636
CmaCh03G000670	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G000670	Cucurbita pepo (Zucchini)	cmacpeB669
CmaCh03G000670	Bottle gourd (USVL1VR-Ls)	cmalsiB598
CmaCh03G000670	Bottle gourd (USVL1VR-Ls)	cmalsiB603