CmaCh02G007540.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G007540.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 4568382 .. 4570300 (+)
Sequence length1077
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTGTAATTATTATTTTTTACAGAAGGTCAAATTTCTGAATAGAAAAAGGGAAAAAAGATGAAGTTAATGAGATATGATAATATAATTTACGCGCTTAATTCCTAATATTTGTAGTTATTTACCATTCAACTAACTTATTAACTTTGTTAATGCTTTATTTCCCAAATTGCCCTTTAAGTGACTTTGAGAGTTATCCACATAATTAGATCTCTCTTTCTCCCTTCCTTGTTTCCTTTCCTTATTCTCCAATATTTTTTTGTTCCTTTATCGCTTTCTTTGCCTCTTTAGTTATTCACTGTTTTACTGTTTTACTGTTGTTGATTTCCCTCTTTTTAATTTTCTTTTTGTTCTTAATTCCCTACCCAATGATCTTTGAAGGTAATATTCGGCCCAAAAATAAGTAACTTCGGGCCTGGGTTAATTATAGGCTCTAACCCAACTGGCTGGCCATATGAATAAAACCAAATATTGATCAAATAAGAACATTATTATTATTATTATTATTCTTTGCATAATGTACTTAAATTTTAACATACGATTCTCCTAACTTCTAGGAAATTGCAGAGTGCTACAATAATAGAGAAATAAAACAAATTATTTGGCATATTATTAAATATATATATTTAGTAATTATTCATCTACCAACCTTGTTAGTCCTTATGTGCACGGTTCCGATCGCTTGAAGTTTGACCCACAGTCAAAGAGTACGGATTTGGGCTAACAACGAAATAACTGATAATTACAGACACCTTCATTGAAAAAAAATATATATTAAATTAAATTATATTTAAACACCACTACACATCACATCAAACGAAGCTAAAATGAAGCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTGTGTGAGAATCCAGATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

mRNA sequence

ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

Coding sequence (CDS)

ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

Protein sequence

MCWRPASGGASSGGVVVDQKQDFVVWAPFSDGELNQSIKRQPHDRPHQTSYTIAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIARFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYPTNTTKLLPADAGITVLPQIAQKRRTVKSQKLVPIGDAPFVPSLYSAAVSGRFSLHRLSIFLESGENLLTVVDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASGAGEDIVTKGEELVDLRRSDIGILWRSSRIDRISVLGVRSIHRLRNKCDDRMLRRSSRSRGTSRLDCHFARFGRKDSFEK
Homology
[Close]
BLAST of CmaCh02G007540.1 vs. TrEMBL
Match: A0A0A0KH58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1 

Query: 53  IAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIA 112
           +AKQGSTALGLKT SSSSS VVWAPLP+ PTTESNPPPSFSGSS SDP RPATTRQT+IA
Sbjct: 1   MAKQGSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIA 60

Query: 113 RFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYP 150
           RFT  NLNSSSMSSGIATCALQL  +VEIPSNL + P
Sbjct: 61  RFTLRNLNSSSMSSGIATCALQLFATVEIPSNLCENP 97

[Close]
BLAST of CmaCh02G007540.1 vs. TrEMBL
Match: A0A0A0KFB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-22
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1 

Query: 220 VDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASG 279
           +DFQDS+D R +FSTRPSGFEN+PN+IL GI I KL + VF  L+LFE+L  G+NLAAS 
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 280 AGEDIVTKGEELVDLRRSDI 300
            GEDIVTKGEEL+ L RSDI
Sbjct: 61  TGEDIVTKGEELISLCRSDI 80

[Close]
BLAST of CmaCh02G007540.1 vs. NCBI nr
Match: gi|700191892|gb|KGN47096.1| (hypothetical protein Csa_6G187400 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1 

Query: 53  IAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIA 112
           +AKQGSTALGLKT SSSSS VVWAPLP+ PTTESNPPPSFSGSS SDP RPATTRQT+IA
Sbjct: 1   MAKQGSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIA 60

Query: 113 RFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYP 150
           RFT  NLNSSSMSSGIATCALQL  +VEIPSNL + P
Sbjct: 61  RFTLRNLNSSSMSSGIATCALQLFATVEIPSNLCENP 97

[Close]
BLAST of CmaCh02G007540.1 vs. NCBI nr
Match: gi|700191893|gb|KGN47097.1| (hypothetical protein Csa_6G187410 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1 

Query: 220 VDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASG 279
           +DFQDS+D R +FSTRPSGFEN+PN+IL GI I KL + VF  L+LFE+L  G+NLAAS 
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 280 AGEDIVTKGEELVDLRRSDI 300
            GEDIVTKGEEL+ L RSDI
Sbjct: 61  TGEDIVTKGEELISLCRSDI 80

The following BLAST results are available for this feature:
BLAST of CmaCh02G007540.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH58_CUCSA5.6e-3483.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1[more]
A0A0A0KFB4_CUCSA6.4e-2268.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1[more]
BLAST of CmaCh02G007540.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191892|gb|KGN47096.1|8.0e-3483.51hypothetical protein Csa_6G187400 [Cucumis sativus][more]
gi|700191893|gb|KGN47097.1|9.2e-2268.75hypothetical protein Csa_6G187410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G007540CmaCh02G007540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G007540.1CmaCh02G007540.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G007540.1.exon.1CmaCh02G007540.1.exon.1exon
CmaCh02G007540.1.exon.2CmaCh02G007540.1.exon.2exon
CmaCh02G007540.1.exon.3CmaCh02G007540.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G007540.1.CDS.1CmaCh02G007540.1.CDS.1CDS
CmaCh02G007540.1.CDS.2CmaCh02G007540.1.CDS.2CDS
CmaCh02G007540.1.CDS.3CmaCh02G007540.1.CDS.3CDS