CmaCh02G007540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G007540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 4568382 .. 4570300 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTGTAATTATTATTTTTTACAGAAGGTCAAATTTCTGAATAGAAAAAGGGAAAAAAGATGAAGTTAATGAGATATGATAATATAATTTACGCGCTTAATTCCTAATATTTGTAGTTATTTACCATTCAACTAACTTATTAACTTTGTTAATGCTTTATTTCCCAAATTGCCCTTTAAGTGACTTTGAGAGTTATCCACATAATTAGATCTCTCTTTCTCCCTTCCTTGTTTCCTTTCCTTATTCTCCAATATTTTTTTGTTCCTTTATCGCTTTCTTTGCCTCTTTAGTTATTCACTGTTTTACTGTTTTACTGTTGTTGATTTCCCTCTTTTTAATTTTCTTTTTGTTCTTAATTCCCTACCCAATGATCTTTGAAGGTAATATTCGGCCCAAAAATAAGTAACTTCGGGCCTGGGTTAATTATAGGCTCTAACCCAACTGGCTGGCCATATGAATAAAACCAAATATTGATCAAATAAGAACATTATTATTATTATTATTATTCTTTGCATAATGTACTTAAATTTTAACATACGATTCTCCTAACTTCTAGGAAATTGCAGAGTGCTACAATAATAGAGAAATAAAACAAATTATTTGGCATATTATTAAATATATATATTTAGTAATTATTCATCTACCAACCTTGTTAGTCCTTATGTGCACGGTTCCGATCGCTTGAAGTTTGACCCACAGTCAAAGAGTACGGATTTGGGCTAACAACGAAATAACTGATAATTACAGACACCTTCATTGAAAAAAAATATATATTAAATTAAATTATATTTAAACACCACTACACATCACATCAAACGAAGCTAAAATGAAGCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTGTGTGAGAATCCAGATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

mRNA sequence

ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

Coding sequence (CDS)

ATGTGTTGGCGACCGGCGAGTGGTGGTGCAAGCAGCGGTGGGGTAGTGGTTGATCAGAAACAAGATTTTGTTGTGTGGGCGCCATTTTCAGACGGCGAACTCAATCAATCAATCAAACGGCAACCGCACGATCGTCCACATCAGACTTCGTACACAATCGCGAAGCAGGGGAGCACAGCCCTCGGATTGAAAACCAGCAGCTCTTCTTCATCCACCGTCGTCTGGGCCCCACTCCCACTTCGGCCGACTACGGAGTCAAACCCGCCGCCATCTTTCTCCGGCTCGTCGTTGTCGGACCCGATCCGGCCGGCCACGACCCGGCAAACTAGAATCGCCCGTTTCACGTTCATGAACTTGAACTCCTCTTCGATGTCCTCAGGGATTGCCACGTGTGCTCTCCAGCTACTTGATAGCGTAGAAATTCCATCCAACTTATTTGATTATCCCACAAATACTACAAAATTGCTGCCCGCAGATGCTGGAATTACCGTTTTGCCCCAAATCGCACAAAAACGTCGAACAGTGAAATCTCAGAAGCTCGTTCCCATCGGCGATGCACCGTTCGTCCCATCGCTTTACAGCGCCGCCGTTTCGGGCCGCTTTAGCCTTCACCGACTCTCTATATTCCTCGAATCTGGAGAGAATCTTTTGACTGTTGTGGATTTTCAAGATTCGGAGGATCTTCGGGCTTACTTCTCTACTCGTCCATCCGGTTTCGAAAATGATCCGAACAATATTCTTACCGGAATCCGAATCTGCAAGCTCCGACACGGCGTGTTTAGCCGCTTGGTGCTGTTCGAGCAATTGAGGCTTGGGAAAAATCTCGCCGCAAGCGGTGCAGGGGAAGATATCGTTACGAAGGGGGAAGAATTGGTTGATCTCCGCCGTAGTGATATCGGAATCCTGTGGCGTTCCAGCAGAATCGATCGGATTAGTGTTCTTGGAGTTCGGAGTATCCACCGGCTGAGGAATAAATGTGACGATCGAATGCTGCGACGATCGAGCCGGAGTCGAGGGACGAGTCGTCTCGATTGCCATTTTGCACGTTTTGGAAGAAAAGATTCGTTTGAGAAATGA

Protein sequence

MCWRPASGGASSGGVVVDQKQDFVVWAPFSDGELNQSIKRQPHDRPHQTSYTIAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIARFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYPTNTTKLLPADAGITVLPQIAQKRRTVKSQKLVPIGDAPFVPSLYSAAVSGRFSLHRLSIFLESGENLLTVVDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASGAGEDIVTKGEELVDLRRSDIGILWRSSRIDRISVLGVRSIHRLRNKCDDRMLRRSSRSRGTSRLDCHFARFGRKDSFEK

Homology

[Close]

BLAST of CmaCh02G007540 vs. TrEMBL
Match: A0A0A0KH58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 53  IAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIA 112
           +AKQGSTALGLKT SSSSS VVWAPLP+ PTTESNPPPSFSGSS SDP RPATTRQT+IA
Sbjct: 1   MAKQGSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIA 60

Query: 113 RFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYP 150
           RFT  NLNSSSMSSGIATCALQL  +VEIPSNL + P
Sbjct: 61  RFTLRNLNSSSMSSGIATCALQLFATVEIPSNLCENP 97

[Close]

BLAST of CmaCh02G007540 vs. TrEMBL
Match: A0A0A0KFB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-22
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 220 VDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASG 279
           +DFQDS+D R +FSTRPSGFEN+PN+IL GI I KL + VF  L+LFE+L  G+NLAAS 
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 280 AGEDIVTKGEELVDLRRSDI 300
            GEDIVTKGEEL+ L RSDI
Sbjct: 61  TGEDIVTKGEELISLCRSDI 80

[Close]

BLAST of CmaCh02G007540 vs. NCBI nr
Match: gi|700191892|gb|KGN47096.1| (hypothetical protein Csa_6G187400 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 53  IAKQGSTALGLKTSSSSSSTVVWAPLPLRPTTESNPPPSFSGSSLSDPIRPATTRQTRIA 112
           +AKQGSTALGLKT SSSSS VVWAPLP+ PTTESNPPPSFSGSS SDP RPATTRQT+IA
Sbjct: 1   MAKQGSTALGLKTKSSSSSNVVWAPLPVLPTTESNPPPSFSGSSASDPTRPATTRQTKIA 60

Query: 113 RFTFMNLNSSSMSSGIATCALQLLDSVEIPSNLFDYP 150
           RFT  NLNSSSMSSGIATCALQL  +VEIPSNL + P
Sbjct: 61  RFTLRNLNSSSMSSGIATCALQLFATVEIPSNLCENP 97

[Close]

BLAST of CmaCh02G007540 vs. NCBI nr
Match: gi|700191893|gb|KGN47097.1| (hypothetical protein Csa_6G187410 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 220 VDFQDSEDLRAYFSTRPSGFENDPNNILTGIRICKLRHGVFSRLVLFEQLRLGKNLAASG 279
           +DFQDS+D R +FSTRPSGFEN+PN+IL GI I KL + VF  L+LFE+L  G+NLAAS 
Sbjct: 1   MDFQDSKDFRTFFSTRPSGFENNPNDILAGIGIGKLGYSVFDGLMLFEELGFGENLAASS 60

Query: 280 AGEDIVTKGEELVDLRRSDI 300
            GEDIVTKGEEL+ L RSDI
Sbjct: 61  TGEDIVTKGEELISLCRSDI 80

The following BLAST results are available for this feature:

BLAST of CmaCh02G007540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G007540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH58_CUCSA	5.6e-34	83.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187400 PE=4 SV=1	[more]
A0A0A0KFB4_CUCSA	6.4e-22	68.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187410 PE=4 SV=1	[more]

BLAST of CmaCh02G007540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G007540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191892\|gb\|KGN47096.1\|	8.0e-34	83.51	hypothetical protein Csa_6G187400 [Cucumis sativus]	[more]
gi\|700191893\|gb\|KGN47097.1\|	9.2e-22	68.75	hypothetical protein Csa_6G187410 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007540.1	CmaCh02G007540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G007540	Csa6G187400	Cucumber (Chinese Long) v2	cmacuB617
CmaCh02G007540	MELO3C035103.2	Melon (DHL92) v3.6.1	cmamedB625

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G007540	Cucurbita pepo (Zucchini)	cmacpeB625
CmaCh02G007540	Cucurbita pepo (Zucchini)	cmacpeB636
CmaCh02G007540	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G007540	Bottle gourd (USVL1VR-Ls)	cmalsiB547
CmaCh02G007540	Cucumber (Gy14) v2	cgybcmaB122
CmaCh02G007540	Cucumber (Gy14) v2	cgybcmaB643
CmaCh02G007540	Cucumber (Gy14) v2	cgybcmaB808
CmaCh02G007540	Silver-seed gourd	carcmaB0477
CmaCh02G007540	Silver-seed gourd	carcmaB0533
CmaCh02G007540	Silver-seed gourd	carcmaB0724
CmaCh02G007540	Cucumber (Chinese Long) v3	cmacucB0739
CmaCh02G007540	Cucumber (Chinese Long) v3	cmacucB0740
CmaCh02G007540	Watermelon (97103) v2	cmawmbB614
CmaCh02G007540	Watermelon (97103) v2	cmawmbB658
CmaCh02G007540	Wax gourd	cmawgoB0756
CmaCh02G007540	Wax gourd	cmawgoB0770
CmaCh02G007540	Cucurbita maxima (Rimu)	cmacmaB228
CmaCh02G007540	Cucurbita maxima (Rimu)	cmacmaB468
CmaCh02G007540	Cucumber (Gy14) v1	cgycmaB0391
CmaCh02G007540	Cucurbita moschata (Rifu)	cmacmoB577
CmaCh02G007540	Cucurbita moschata (Rifu)	cmacmoB605
CmaCh02G007540	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G007540	Wild cucumber (PI 183967)	cmacpiB622
CmaCh02G007540	Cucumber (Chinese Long) v2	cmacuB615
CmaCh02G007540	Melon (DHL92) v3.5.1	cmameB547
CmaCh02G007540	Watermelon (Charleston Gray)	cmawcgB527
CmaCh02G007540	Watermelon (Charleston Gray)	cmawcgB569
CmaCh02G007540	Watermelon (97103) v1	cmawmB561
CmaCh02G007540	Watermelon (97103) v1	cmawmB583