CmaCh01G010800.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGACCAAAACAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCGACTCTTCCAACCAACCAATCGACAAGAACTTCATGTTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCAGGTCTATTCAAATCTCTCTCCACTTCCCAACCAAATTACGACGCATTCAGTGTCTATGAGCTCGACTCTTTGTCACCTCCAACGATGTTGGAGGACGAGAAACAAACAACAGTGTCTACAACAACAATAACAACAACACGAGAAAAGAACGATGAGTCAGAAGAAAAAACCATTTCGATTTCAGAAATTGGCGACGATGAAGTTGAAGAAGACGACGATAGAACAGGTGATGAAGAAGGGAATGACGACGCGTTGAACGATGAAGAACTTAACAGAAAATTCGACGAATTTATCAAAAGAATGAAGGAAGAAATCATAGATGATGCTCAAAAGACTCTAGTAGTAGTTTAA ATGGCCGACCAAAACAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCGACTCTTCCAACCAACCAATCGACAAGAACTTCATGTTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCAGGTCTATTCAAATCTCTCTCCACTTCCCAACCAAATTACGACGCATTCAGTGTCTATGAGCTCGACTCTTTGTCACCTCCAACGATGTTGGAGGACGAGAAACAAACAACAGTGTCTACAACAACAATAACAACAACACGAGAAAAGAACGATGAGTCAGAAGAAAAAACCATTTCGATTTCAGAAATTGGCGACGATGAAGTTGAAGAAGACGACGATAGAACAGGTGATGAAGAAGGGAATGACGACGCGTTGAACGATGAAGAACTTAACAGAAAATTCGACGAATTTATCAAAAGAATGAAGGAAGAAATCATAGATGATGCTCAAAAGACTCTAGTAGTAGTTTAA ATGGCCGACCAAAACAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCGACTCTTCCAACCAACCAATCGACAAGAACTTCATGTTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCAGGTCTATTCAAATCTCTCTCCACTTCCCAACCAAATTACGACGCATTCAGTGTCTATGAGCTCGACTCTTTGTCACCTCCAACGATGTTGGAGGACGAGAAACAAACAACAGTGTCTACAACAACAATAACAACAACACGAGAAAAGAACGATGAGTCAGAAGAAAAAACCATTTCGATTTCAGAAATTGGCGACGATGAAGTTGAAGAAGACGACGATAGAACAGGTGATGAAGAAGGGAATGACGACGCGTTGAACGATGAAGAACTTAACAGAAAATTCGACGAATTTATCAAAAGAATGAAGGAAGAAATCATAGATGATGCTCAAAAGACTCTAGTAGTAGTTTAA MADQNNNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILDSSNQPIDKNFMFLLCNGLLVFLAKYSGLFKSLSTSQPNYDAFSVYELDSLSPPTMLEDEKQTTVSTTTITTTREKNDESEEKTISISEIGDDEVEEDDDRTGDEEGNDDALNDEELNRKFDEFIKRMKEEIIDDAQKTLVVV
BLAST of CmaCh01G010800.1 vs. TrEMBL
Match: A0A0A0K300_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G098730 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 7.8e-24 Identity = 92/192 (47.92%), Postives = 121/192 (63.02%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. TrEMBL
Match: F6I542_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00270 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12 Identity = 68/205 (33.17%), Postives = 111/205 (54.15%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. TrEMBL
Match: A5ASY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041931 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11 Identity = 68/205 (33.17%), Postives = 110/205 (53.66%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. TrEMBL
Match: A0A0D2QYQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G449600 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.4e-11 Identity = 74/214 (34.58%), Postives = 112/214 (52.34%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. TrEMBL
Match: A0A0D2U4X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G449500 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.4e-10 Identity = 61/182 (33.52%), Postives = 98/182 (53.85%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. TAIR10
Match: AT3G13130.1 (AT3G13130.1 unknown protein) HSP 1 Score: 58.9 bits (141), Expect = 3.7e-09 Identity = 59/200 (29.50%), Postives = 103/200 (51.50%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. NCBI nr
Match: gi|659126056|ref|XP_008462992.1| (PREDICTED: bromo and FHA domain-containing protein DDB_G0267958 isoform X1 [Cucumis melo]) HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26 Identity = 98/194 (50.52%), Postives = 124/194 (63.92%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. NCBI nr
Match: gi|659126058|ref|XP_008462993.1| (PREDICTED: uncharacterized protein LOC103501239 isoform X2 [Cucumis melo]) HSP 1 Score: 126.3 bits (316), Expect = 5.4e-26 Identity = 95/185 (51.35%), Postives = 120/185 (64.86%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. NCBI nr
Match: gi|700188772|gb|KGN44005.1| (hypothetical protein Csa_7G098730 [Cucumis sativus]) HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23 Identity = 92/192 (47.92%), Postives = 121/192 (63.02%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. NCBI nr
Match: gi|823222514|ref|XP_012443974.1| (PREDICTED: histone acetyltransferase KAT6B-like isoform X6 [Gossypium raimondii]) HSP 1 Score: 79.3 bits (194), Expect = 7.5e-12 Identity = 75/199 (37.69%), Postives = 111/199 (55.78%), Query Frame = 1
BLAST of CmaCh01G010800.1 vs. NCBI nr
Match: gi|731433208|ref|XP_010644555.1| (PREDICTED: uncharacterized protein LOC104877619 [Vitis vinifera]) HSP 1 Score: 79.3 bits (194), Expect = 7.5e-12 Identity = 68/205 (33.17%), Postives = 111/205 (54.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
|