CmaCh01G002130.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G002130.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionClustered mitochondria protein homolog
LocationCma_Chr01 : 983385 .. 985231 (-)
Sequence length537
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTGGGTTAATCAGGAAACTCCATTTTCCGTTTGGGAAAGAGGAAACTTCGGCCGCCTCTCTCAGCCACTCGTCGGCCCCTCTCTTAAACCTCACACACCCGAACTCTCTCCCAAAACCTCTGTATTCCTCCTCTTCTTCCGCCACCGTCCTCTTTGGATTCGACAGCTTACGACCACACCTCTGAAACTCGGTAAAATTTGTAGATATTTCTTTACTTTGAATTGAAATGAGAACGCTTTATTTCATTGTTTTATGTCTTCTTCTTCGTAGTTTGATTGGCTTGCATCTGGGTTTTGTTATTTGTTTTTTCGATGTGGTTTCATTTCTGTTTCTGCCAAATTGGTTGTTGCCGTTTACGATGTACCAAGTCGTTGCTTAAAGTTATCAGAAAAATTGAGTTCAAGCATTTGTATTTGTCGAAAGCCTTTTTAGGGGAAGGGAAAGGGTTATGAACTGATGGATGATAAGGTAACTATTCCTAGGGAAAATGTTAACTGGATTTCTGATACAGTGTCTTTAAAAACAGCAGCGAAAAAATAGTCTAGGTACGTACACACAGATATTAATTTTTTCTTATAAAAGCATACTCTACTGAAGGCTGTAATAGGGTAGTGTTTTTTGTTTGAAGACTAGAGATAAAATGATAAATTCTCTGATTCTGATTGAAATATTAAAATTTTGAATGAGAAGACATGCACCATAATTCTATTGTTTATTTTGAAGCACATTTTCTTCCATTTTTTATGATGTTTATGATTTCTGGAATGCTAGGAAGTAGAAATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGTGTTTTCATTATTAGTCCAATTGATCCTATATCAAGGAGAACTCTTGAGGTGCTTGAACGTCGAATTTGACATCAATTGTGACCGATTCTATATTTTATTTTATTTTTTTTAAAAAGCATATGGAATGTAAATAATTTGAAATGGAGTACAAAGCATGTTTGGGAAGTTGATCTCTTTTCAATGTGATATAGATGTTTTTAAAAATATGGAATTTCGCATTTTTGAAGCTCTTTTTTTTTGTTTTTATAAAAAAAATGTAGCTTGATTTAACTAAGAGGTTTTTTTAGTCATAGAACAAGGAAGATAACGAAGTGTGCTCTGCCCCGAGGTCCTAATCTACTTAATGTGGTTATTTTGGATTTCAGCATCGTAGGGAAAATATCTTTCAGTGTCTGGTTTTCAAACTATAGTTCGTAAGCACAAGATAACAATGAGTCCGGGAAAAGTTATATTTCTTCTCGATATTTTTTTTTATCATACGTCTTCTAGGGTTAAGCTTTTGGTCATCAGTTCATGTGTTTGGTAATATGGTATTTGTACACTCATATTTGACTCAACCATAGTACTTTATGAAGTGAGGATGTCCTTTCAAATTTGAATGCAATATTGAACATGATCACTTACTTTGATGTTGGTTCTCATCATTTTTTTGCCCCACCAATCGGTTTGCAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAGTAAGTCAATTTGAACATGACGACATGTTAATATAGTTTTTCATATCCTTCAGATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

mRNA sequence

CAAATTGGGTTAATCAGGAAACTCCATTTTCCGTTTGGGAAAGAGGAAACTTCGGCCGCCTCTCTCAGCCACTCGTCGGCCCCTCTCTTAAACCTCACACACCCGAACTCTCTCCCAAAACCTCTGTATTCCTCCTCTTCTTCCGCCACCGTCCTCTTTGGATTCGACAGCTTACGACCACACCTCTGAAACTCGGAAGTAGAAATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

Coding sequence (CDS)

ATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

Protein sequence

MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQIIDMRLIDSKAIMGPCG
Homology
[Close]
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match: A0A0A0L9W0_CUCSA (Clustered mitochondria protein homolog OS=Cucumis sativus GN=Csa_3G698540 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVN  ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVGSGASKDVNT-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

[Close]
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match: M5X9G4_PRUPE (Clustered mitochondria protein homolog OS=Prunus persica GN=PRUPE_ppa000213mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+ AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRRVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEAKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKL+LQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLDLQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match: A0A103Y157_CYNCS (Clustered mitochondria protein homolog OS=Cynara cardunculus var. scolymus GN=Ccrd_021108 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-13
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAA-SKDVNNGALESKAEPVESVEESSDI---KA 60
          MAGKS +GRN+KG+H+ TN SE  VSS   +KD  N   E+K +    V +S++I   K 
Sbjct: 1  MAGKSSRGRNKKGSHNTTNASEQAVSSNGHAKDSLNSVEETKVD-TNGVPDSTEIPATKP 60

Query: 61 DIKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          D+KESE A+ E+Q KQG++HL+P+ VKTQ GEKLELQ+
Sbjct: 61 DVKESENASSENQAKQGDIHLFPVQVKTQVGEKLELQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match: D7T2X0_VITVI (Clustered mitochondria protein homolog OS=Vitis vinifera GN=VIT_13s0064g01350 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVN---NGALESKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+G+H ATN+SE + SS +    N   +G+ +++A  V +  ES+   ++
Sbjct: 1  MAGKSNKGRNRRGSHSATNSSEPVGSSDSQMKDNVTASGSNQAEANGVMATAESNSTNSE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          +KESETA  +   KQGE++LYP+ VKTQ GEKLELQ+
Sbjct: 61 VKESETANTKDGSKQGEINLYPVSVKTQGGEKLELQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match: A0A067L4N6_JATCU (Clustered mitochondria protein homolog OS=Jatropha curcas GN=JCGZ_16718 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-13
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESK---AEPVESVEESSDIKAD 60
          MAGKS KG++R+G+++ATN+SE++VS++A    N  A ES    +    +V ES++   D
Sbjct: 1  MAGKSNKGKSRRGSNNATNSSESVVSASAPVKDNLAASESAKVDSNGAPAVSESTNAIPD 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KE E A   ++PKQGELHLYP+ VKTQSGEKLELQ+
Sbjct: 61 GKEPERANLANEPKQGELHLYPVSVKTQSGEKLELQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. TAIR10
Match: AT3G52140.4 (AT3G52140.4 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 1 

Query: 1   MAGKSGKGRNRKGAHHATNNSEALVSS------------------AASKDV--------- 60
           MAGKS K + ++ A   T NS   V S                  AA+  V         
Sbjct: 1   MAGKSNKSKAKRAAQSTTTNSTTDVKSDAPAPPVAATVPATAPVTAAAAPVATAAAPVTA 60

Query: 61  -NNGALESKAEPVESVEESSDI--KADIKESETAAPESQPKQGELHLYPLCVKTQSGEKL 95
            +NG L +    V    E +    KAD  ES+    ++QPKQGEL LYP+ VKTQSG K+
Sbjct: 61  PDNGTLTAVDSAVPEANEVAPTIPKADESESQVENNDAQPKQGELRLYPVSVKTQSGGKM 120

[Close]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match: gi|659123676|ref|XP_008461782.1| (PREDICTED: clustered mitochondria protein isoform X2 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-31
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVNN ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVCSGASKDVNN-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

[Close]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match: gi|659123674|ref|XP_008461781.1| (PREDICTED: clustered mitochondria protein isoform X1 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-31
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVNN ALESKAE VES EESSDIKADIKE
Sbjct: 5  MAGKSNKLKNRKGAHHAPNSSEVVVCSGASKDVNN-ALESKAELVESAEESSDIKADIKE 64

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 65 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match: gi|778682835|ref|XP_011651791.1| (PREDICTED: clustered mitochondria protein [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVN  ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVGSGASKDVNT-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

[Close]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match: gi|645250718|ref|XP_008231340.1| (PREDICTED: clustered mitochondria protein [Prunus mume])

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNRK AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRKVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEGKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKLELQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLELQL 97

[Close]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match: gi|596055817|ref|XP_007220917.1| (hypothetical protein PRUPE_ppa000213mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+ AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRRVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEAKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKL+LQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLDLQL 97

The following BLAST results are available for this feature:
BLAST of CmaCh01G002130.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G002130.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9W0_CUCSA2.6e-3082.98Clustered mitochondria protein homolog OS=Cucumis sativus GN=Csa_3G698540 PE=3 S... [more]
M5X9G4_PRUPE6.2e-1656.70Clustered mitochondria protein homolog OS=Prunus persica GN=PRUPE_ppa000213mg PE... [more]
A0A103Y157_CYNCS2.9e-1353.06Clustered mitochondria protein homolog OS=Cynara cardunculus var. scolymus GN=Cc... [more]
D7T2X0_VITVI3.7e-1350.52Clustered mitochondria protein homolog OS=Vitis vinifera GN=VIT_13s0064g01350 PE... [more]
A0A067L4N6_JATCU6.4e-1352.58Clustered mitochondria protein homolog OS=Jatropha curcas GN=JCGZ_16718 PE=3 SV=... [more]
BLAST of CmaCh01G002130.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52140.41.8e-0636.29 tetratricopeptide repeat (TPR)-containing protein[more]
BLAST of CmaCh01G002130.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123676|ref|XP_008461782.1|9.7e-3184.04PREDICTED: clustered mitochondria protein isoform X2 [Cucumis melo][more]
gi|659123674|ref|XP_008461781.1|9.7e-3184.04PREDICTED: clustered mitochondria protein isoform X1 [Cucumis melo][more]
gi|778682835|ref|XP_011651791.1|3.7e-3082.98PREDICTED: clustered mitochondria protein [Cucumis sativus][more]
gi|645250718|ref|XP_008231340.1|4.0e-1658.76PREDICTED: clustered mitochondria protein [Prunus mume][more]
gi|596055817|ref|XP_007220917.1|8.8e-1656.70hypothetical protein PRUPE_ppa000213mg [Prunus persica][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048312 intracellular distribution of mitochondria
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003723 RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh01G002130CmaCh01G002130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh01G002130.1CmaCh01G002130.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G002130.1.CDS.3CmaCh01G002130.1.CDS.3CDS
CmaCh01G002130.1.CDS.2CmaCh01G002130.1.CDS.2CDS
CmaCh01G002130.1.CDS.1CmaCh01G002130.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G002130.1.five_prime_UTR.2CmaCh01G002130.1.five_prime_UTR.2five_prime_UTR
CmaCh01G002130.1.five_prime_UTR.1CmaCh01G002130.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G002130.1.exon.4CmaCh01G002130.1.exon.4exon
CmaCh01G002130.1.exon.3CmaCh01G002130.1.exon.3exon
CmaCh01G002130.1.exon.2CmaCh01G002130.1.exon.2exon
CmaCh01G002130.1.exon.1CmaCh01G002130.1.exon.1exon