CmaCh01G002130 (gene) Cucurbita maxima (Rimu)

NameCmaCh01G002130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionClustered mitochondria protein homolog
LocationCma_Chr01 : 983385 .. 985231 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTGGGTTAATCAGGAAACTCCATTTTCCGTTTGGGAAAGAGGAAACTTCGGCCGCCTCTCTCAGCCACTCGTCGGCCCCTCTCTTAAACCTCACACACCCGAACTCTCTCCCAAAACCTCTGTATTCCTCCTCTTCTTCCGCCACCGTCCTCTTTGGATTCGACAGCTTACGACCACACCTCTGAAACTCGGTAAAATTTGTAGATATTTCTTTACTTTGAATTGAAATGAGAACGCTTTATTTCATTGTTTTATGTCTTCTTCTTCGTAGTTTGATTGGCTTGCATCTGGGTTTTGTTATTTGTTTTTTCGATGTGGTTTCATTTCTGTTTCTGCCAAATTGGTTGTTGCCGTTTACGATGTACCAAGTCGTTGCTTAAAGTTATCAGAAAAATTGAGTTCAAGCATTTGTATTTGTCGAAAGCCTTTTTAGGGGAAGGGAAAGGGTTATGAACTGATGGATGATAAGGTAACTATTCCTAGGGAAAATGTTAACTGGATTTCTGATACAGTGTCTTTAAAAACAGCAGCGAAAAAATAGTCTAGGTACGTACACACAGATATTAATTTTTTCTTATAAAAGCATACTCTACTGAAGGCTGTAATAGGGTAGTGTTTTTTGTTTGAAGACTAGAGATAAAATGATAAATTCTCTGATTCTGATTGAAATATTAAAATTTTGAATGAGAAGACATGCACCATAATTCTATTGTTTATTTTGAAGCACATTTTCTTCCATTTTTTATGATGTTTATGATTTCTGGAATGCTAGGAAGTAGAAATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGTGTTTTCATTATTAGTCCAATTGATCCTATATCAAGGAGAACTCTTGAGGTGCTTGAACGTCGAATTTGACATCAATTGTGACCGATTCTATATTTTATTTTATTTTTTTTAAAAAGCATATGGAATGTAAATAATTTGAAATGGAGTACAAAGCATGTTTGGGAAGTTGATCTCTTTTCAATGTGATATAGATGTTTTTAAAAATATGGAATTTCGCATTTTTGAAGCTCTTTTTTTTTGTTTTTATAAAAAAAATGTAGCTTGATTTAACTAAGAGGTTTTTTTAGTCATAGAACAAGGAAGATAACGAAGTGTGCTCTGCCCCGAGGTCCTAATCTACTTAATGTGGTTATTTTGGATTTCAGCATCGTAGGGAAAATATCTTTCAGTGTCTGGTTTTCAAACTATAGTTCGTAAGCACAAGATAACAATGAGTCCGGGAAAAGTTATATTTCTTCTCGATATTTTTTTTTATCATACGTCTTCTAGGGTTAAGCTTTTGGTCATCAGTTCATGTGTTTGGTAATATGGTATTTGTACACTCATATTTGACTCAACCATAGTACTTTATGAAGTGAGGATGTCCTTTCAAATTTGAATGCAATATTGAACATGATCACTTACTTTGATGTTGGTTCTCATCATTTTTTTGCCCCACCAATCGGTTTGCAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAGTAAGTCAATTTGAACATGACGACATGTTAATATAGTTTTTCATATCCTTCAGATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

mRNA sequence

CAAATTGGGTTAATCAGGAAACTCCATTTTCCGTTTGGGAAAGAGGAAACTTCGGCCGCCTCTCTCAGCCACTCGTCGGCCCCTCTCTTAAACCTCACACACCCGAACTCTCTCCCAAAACCTCTGTATTCCTCCTCTTCTTCCGCCACCGTCCTCTTTGGATTCGACAGCTTACGACCACACCTCTGAAACTCGGAAGTAGAAATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

Coding sequence (CDS)

ATGGCGGGAAAATCCGGTAAAGGGAGGAATAGGAAAGGGGCGCACCATGCTACAAATAATTCTGAGGCACTAGTTTCTTCTGCTGCTTCAAAAGATGTTAATAATGGTGCTTTGGAGTCGAAAGCAGAGCCTGTTGAATCAGTCGAGGAATCGTCAGATATTAAGGCAGACATCAAAGAATCTGAAACAGCTGCTCCAGAAAGTCAGCCAAAGCAAGGTGAACTTCATCTTTATCCGCTATGTGTCAAAACACAAAGCGGCGAAAAGCTTGAATTGCAAATTATTGACATGCGCCTAATTGATTCCAAAGCTATTATGGGGCCGTGTGGATAG

Protein sequence

MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQIIDMRLIDSKAIMGPCG
BLAST of CmaCh01G002130 vs. TrEMBL
Match: A0A0A0L9W0_CUCSA (Clustered mitochondria protein homolog OS=Cucumis sativus GN=Csa_3G698540 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVN  ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVGSGASKDVNT-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

BLAST of CmaCh01G002130 vs. TrEMBL
Match: M5X9G4_PRUPE (Clustered mitochondria protein homolog OS=Prunus persica GN=PRUPE_ppa000213mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+ AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRRVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEAKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKL+LQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLDLQL 97

BLAST of CmaCh01G002130 vs. TrEMBL
Match: A0A103Y157_CYNCS (Clustered mitochondria protein homolog OS=Cynara cardunculus var. scolymus GN=Ccrd_021108 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-13
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAA-SKDVNNGALESKAEPVESVEESSDI---KA 60
          MAGKS +GRN+KG+H+ TN SE  VSS   +KD  N   E+K +    V +S++I   K 
Sbjct: 1  MAGKSSRGRNKKGSHNTTNASEQAVSSNGHAKDSLNSVEETKVD-TNGVPDSTEIPATKP 60

Query: 61 DIKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          D+KESE A+ E+Q KQG++HL+P+ VKTQ GEKLELQ+
Sbjct: 61 DVKESENASSENQAKQGDIHLFPVQVKTQVGEKLELQL 97

BLAST of CmaCh01G002130 vs. TrEMBL
Match: D7T2X0_VITVI (Clustered mitochondria protein homolog OS=Vitis vinifera GN=VIT_13s0064g01350 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVN---NGALESKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+G+H ATN+SE + SS +    N   +G+ +++A  V +  ES+   ++
Sbjct: 1  MAGKSNKGRNRRGSHSATNSSEPVGSSDSQMKDNVTASGSNQAEANGVMATAESNSTNSE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          +KESETA  +   KQGE++LYP+ VKTQ GEKLELQ+
Sbjct: 61 VKESETANTKDGSKQGEINLYPVSVKTQGGEKLELQL 97

BLAST of CmaCh01G002130 vs. TrEMBL
Match: A0A067L4N6_JATCU (Clustered mitochondria protein homolog OS=Jatropha curcas GN=JCGZ_16718 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-13
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESK---AEPVESVEESSDIKAD 60
          MAGKS KG++R+G+++ATN+SE++VS++A    N  A ES    +    +V ES++   D
Sbjct: 1  MAGKSNKGKSRRGSNNATNSSESVVSASAPVKDNLAASESAKVDSNGAPAVSESTNAIPD 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KE E A   ++PKQGELHLYP+ VKTQSGEKLELQ+
Sbjct: 61 GKEPERANLANEPKQGELHLYPVSVKTQSGEKLELQL 97

BLAST of CmaCh01G002130 vs. TAIR10
Match: AT3G52140.4 (AT3G52140.4 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 1

Query: 1   MAGKSGKGRNRKGAHHATNNSEALVSS------------------AASKDV--------- 60
           MAGKS K + ++ A   T NS   V S                  AA+  V         
Sbjct: 1   MAGKSNKSKAKRAAQSTTTNSTTDVKSDAPAPPVAATVPATAPVTAAAAPVATAAAPVTA 60

Query: 61  -NNGALESKAEPVESVEESSDI--KADIKESETAAPESQPKQGELHLYPLCVKTQSGEKL 95
            +NG L +    V    E +    KAD  ES+    ++QPKQGEL LYP+ VKTQSG K+
Sbjct: 61  PDNGTLTAVDSAVPEANEVAPTIPKADESESQVENNDAQPKQGELRLYPVSVKTQSGGKM 120

BLAST of CmaCh01G002130 vs. NCBI nr
Match: gi|659123676|ref|XP_008461782.1| (PREDICTED: clustered mitochondria protein isoform X2 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-31
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVNN ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVCSGASKDVNN-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

BLAST of CmaCh01G002130 vs. NCBI nr
Match: gi|659123674|ref|XP_008461781.1| (PREDICTED: clustered mitochondria protein isoform X1 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-31
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVNN ALESKAE VES EESSDIKADIKE
Sbjct: 5  MAGKSNKLKNRKGAHHAPNSSEVVVCSGASKDVNN-ALESKAELVESAEESSDIKADIKE 64

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 65 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 97

BLAST of CmaCh01G002130 vs. NCBI nr
Match: gi|778682835|ref|XP_011651791.1| (PREDICTED: clustered mitochondria protein [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALESKAEPVESVEESSDIKADIKE 60
          MAGKS K +NRKGAHHA N+SE +V S ASKDVN  ALESKAE VES EESSDIKADIKE
Sbjct: 1  MAGKSNKLKNRKGAHHAPNSSEVVVGSGASKDVNT-ALESKAELVESAEESSDIKADIKE 60

Query: 61 SETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
          SETA PESQPKQGELHLYP+CVKTQSGEKLELQ+
Sbjct: 61 SETATPESQPKQGELHLYPICVKTQSGEKLELQL 93

BLAST of CmaCh01G002130 vs. NCBI nr
Match: gi|645250718|ref|XP_008231340.1| (PREDICTED: clustered mitochondria protein [Prunus mume])

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNRK AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRKVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEGKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKLELQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLELQL 97

BLAST of CmaCh01G002130 vs. NCBI nr
Match: gi|596055817|ref|XP_007220917.1| (hypothetical protein PRUPE_ppa000213mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1

Query: 1  MAGKSGKGRNRKGAHHATNNSEALVSSAASKDVNNGALE---SKAEPVESVEESSDIKAD 60
          MAGKS KGRNR+ AH+A N+S+A+V + A    N+ A E   + A  V +VEES++ K +
Sbjct: 1  MAGKSNKGRNRRVAHNAANSSDAVVPTDAPVKDNSSASEPIKADANGVSAVEESTEAKPE 60

Query: 61 IKESETAAPESQPKQGELHLYPLCVKTQSGEKLELQI 95
           KESET    SQPKQG+LHLYP+ VKTQSGEKL+LQ+
Sbjct: 61 AKESETENSTSQPKQGDLHLYPVSVKTQSGEKLDLQL 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9W0_CUCSA2.6e-3082.98Clustered mitochondria protein homolog OS=Cucumis sativus GN=Csa_3G698540 PE=3 S... [more]
M5X9G4_PRUPE6.2e-1656.70Clustered mitochondria protein homolog OS=Prunus persica GN=PRUPE_ppa000213mg PE... [more]
A0A103Y157_CYNCS2.9e-1353.06Clustered mitochondria protein homolog OS=Cynara cardunculus var. scolymus GN=Cc... [more]
D7T2X0_VITVI3.7e-1350.52Clustered mitochondria protein homolog OS=Vitis vinifera GN=VIT_13s0064g01350 PE... [more]
A0A067L4N6_JATCU6.4e-1352.58Clustered mitochondria protein homolog OS=Jatropha curcas GN=JCGZ_16718 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT3G52140.41.8e-0636.29 tetratricopeptide repeat (TPR)-containing protein[more]
Match NameE-valueIdentityDescription
gi|659123676|ref|XP_008461782.1|9.7e-3184.04PREDICTED: clustered mitochondria protein isoform X2 [Cucumis melo][more]
gi|659123674|ref|XP_008461781.1|9.7e-3184.04PREDICTED: clustered mitochondria protein isoform X1 [Cucumis melo][more]
gi|778682835|ref|XP_011651791.1|3.7e-3082.98PREDICTED: clustered mitochondria protein [Cucumis sativus][more]
gi|645250718|ref|XP_008231340.1|4.0e-1658.76PREDICTED: clustered mitochondria protein [Prunus mume][more]
gi|596055817|ref|XP_007220917.1|8.8e-1656.70hypothetical protein PRUPE_ppa000213mg [Prunus persica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048312 intracellular distribution of mitochondria
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G002130.1CmaCh01G002130.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G002130CmoCh01G002250Cucurbita moschata (Rifu)cmacmoB468
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G002130Cucurbita maxima (Rimu)cmacmaB255
CmaCh01G002130Cucurbita maxima (Rimu)cmacmaB360
CmaCh01G002130Cucurbita maxima (Rimu)cmacmaB440
CmaCh01G002130Cucumber (Gy14) v1cgycmaB0569
CmaCh01G002130Cucurbita moschata (Rifu)cmacmoB462
CmaCh01G002130Cucurbita moschata (Rifu)cmacmoB466
CmaCh01G002130Cucurbita moschata (Rifu)cmacmoB490
CmaCh01G002130Wild cucumber (PI 183967)cmacpiB456
CmaCh01G002130Wild cucumber (PI 183967)cmacpiB502
CmaCh01G002130Cucumber (Chinese Long) v2cmacuB453
CmaCh01G002130Cucumber (Chinese Long) v2cmacuB496
CmaCh01G002130Melon (DHL92) v3.5.1cmameB404
CmaCh01G002130Melon (DHL92) v3.5.1cmameB426
CmaCh01G002130Watermelon (Charleston Gray)cmawcgB378
CmaCh01G002130Watermelon (Charleston Gray)cmawcgB387
CmaCh01G002130Watermelon (97103) v1cmawmB408
CmaCh01G002130Watermelon (97103) v1cmawmB416
CmaCh01G002130Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G002130Cucurbita pepo (Zucchini)cmacpeB465
CmaCh01G002130Cucurbita pepo (Zucchini)cmacpeB472
CmaCh01G002130Cucurbita pepo (Zucchini)cmacpeB494
CmaCh01G002130Bottle gourd (USVL1VR-Ls)cmalsiB418
CmaCh01G002130Bottle gourd (USVL1VR-Ls)cmalsiB422
CmaCh01G002130Bottle gourd (USVL1VR-Ls)cmalsiB439
CmaCh01G002130Cucumber (Gy14) v2cgybcmaB366
CmaCh01G002130Cucumber (Gy14) v2cgybcmaB938
CmaCh01G002130Melon (DHL92) v3.6.1cmamedB461
CmaCh01G002130Melon (DHL92) v3.6.1cmamedB489
CmaCh01G002130Silver-seed gourdcarcmaB0498
CmaCh01G002130Silver-seed gourdcarcmaB0626
CmaCh01G002130Silver-seed gourdcarcmaB1059
CmaCh01G002130Silver-seed gourdcarcmaB1134
CmaCh01G002130Cucumber (Chinese Long) v3cmacucB0545
CmaCh01G002130Cucumber (Chinese Long) v3cmacucB0595
CmaCh01G002130Watermelon (97103) v2cmawmbB445
CmaCh01G002130Watermelon (97103) v2cmawmbB509
CmaCh01G002130Wax gourdcmawgoB0553
CmaCh01G002130Wax gourdcmawgoB0608