CmaCh00G001470.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001470.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase
Location	Cma_Chr00 : 9704432 .. 9705724 (+)
Sequence length	711

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAAGTTCTATTACAATGGAATCCTTTGGTAGTGGTGTTAAGAAAAAGTCGAAAGGTGGCTATTATTATGAAAGCAATCTATTCATTGTCTGTAATTTTGATGTTACTTTACTTCCGATCAAGCTCAACCTTCCTATGATATGCCCACCTCTTGATTGGATGAGTGCGTGTCCGCCGAATCAATCTCCTAGATATCTCTCAGATCTATCAGGGGGTTACCTAAGTGGACCGACTGGTGAGATTTATGATCGTTACCGCTTATTAAGTTCTGGTGACCTAAATCACTTTTATATATATGTAGGTTATTCTTCTTATTATAAGAATGATTACAAGTCTATGTGTAAAGTCATGAATGCGCTGCAGCGCCCTTTACAATCAACAGTGATTGGTTGAACCATTTAATGGAAAATGAAGACTATTTTGTTGACCATGGTCTTCTTATGCCACAATTTCTGGAAACGATGAATATCAGAGATGTTAGCCCCATTCTTAGAGATTTCCACATGAAGGATGAGGTAATATACAATGAATTTTCCTTTAACGATTTGTTACATACAGTGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTGTAATTCTTATATAAGAGATGAAATTAGCTTATCAACATTCTTCCATTTTAAGTCTTTAA

mRNA sequence

ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAATGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTCTTATCAACATTCTTCCATTTTAAGTCTTTAA

Coding sequence (CDS)

ATGGAAGAATATAAATCGAAGTTTCCTTTATCGAAAATTGAATTACGTCAGCTACAACAGAAAATAGAAGATGACAGTATGAAGTTCGACGAGAGTTCAATATATAATGTTGTTCCTAACTTTATTAAAATCTTAATACAGAAGGATAAATTGAGTGCAAAGGATTATATAATTGAGAAATTAGCTGATGATGATGACATAAAAATGCTTGAAGAGTTCGGTCAATATACTCTAGAGGTATTAATTATTCACGTTCTGGGAATTGTTTTCAACACATATGAAAGTATGGTTCGTGCAGCTTCTTTAATTAATCAACTCGACTCTTCTGTACGTACACATTATAGGTTATTAAAATTCCACTCCTCTAAAAAGAGCATTTCTAATGTTCATATGTCTGATAAAATGGAAAAGTCTGAGACTTTTTCCTTCGGTGTCTTCTTACTCGAGTTTATGGAGGAGCGGGGATTGGTAATGATTAAGACTATCCAGCGTTCACGCTATGAACGATTAATTCTCAATCTCGCAAGAGACTACGATGGCTATAAATTTTGCCTACCCGCCTTTCTTGACTTCAGAGGTAGAATTTATCGCTGTGGTATTTTGCATTTTCACGAGTGTGATCTTGCACGAAGCCTGATTGTGTTTGCTGATCATAATCATGAGAAGGAGGAGATAAAGTCTTATCAACATTCTTCCATTTTAAGTCTTTAA

Protein sequence

MEEYKSKFPLSKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESMVRAASLINQLDSSVRTHYRLLKFHSSKKSISNVHMSDKMEKSETFSFGVFLLEFMEERGLVMIKTIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFADHNHEKEEIKSYQHSSILSL

Homology

[Close]

BLAST of CmaCh00G001470.1 vs. Swiss-Prot
Match: YM23_MAIZE (Uncharacterized 33.9 kDa protein in mitochondrial linear 2.3 KB plasmid OS=Zea mays PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 14  ELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEF 73
           ELR++Q +IE  ++ FDE S++            KD+ SA+DY+++KL DD D  ++   
Sbjct: 178 ELREIQTQIEHLTIHFDEGSVHESAGQLKGKFFNKDRQSARDYLLDKLKDDKDKDIVRGM 237

Query: 74  GQYTLEVLIIHVLGIVFNTY---ESMVRAASLINQLDSSVRTHY 115
           G YTLE + IHVL  +FN +   ++ V AA+LI++LD + +T Y
Sbjct: 238 GTYTLECVAIHVLSKLFNVFSLEKTSVLAAALISELDITAKTEY 281

[Close]

BLAST of CmaCh00G001470.1 vs. Swiss-Prot
Match: RPOP_MAIZE (Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.0e-10
Identity = 37/114 (32.46%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 14  ELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKMLEEF 73
           EL+ +Q KIE  +M F E+++Y  +       I  D+ +AKDY+++KL   DD+ ++   
Sbjct: 130 ELKGIQTKIERMTMYFYEANVYESLGQLKNKFINIDEQTAKDYLLDKLEKPDDLDIVRAM 189

Query: 74  GQYTLEVLIIHVLGIVFNTY---ESMVRAASLINQLDSSVRTHYRLLKFHSSKK 125
           G YTLE +++ VL   FN +   ++ V+ A+L+++LDS+ +  Y  +     K+
Sbjct: 190 GTYTLECIVVFVLSKQFNVFALDKASVQVATLVSELDSAAKIEYNRIIAEDRKR 243

[Close]

BLAST of CmaCh00G001470.1 vs. TrEMBL
Match: A0A101M3N5_PICGL (RNA polymerase OS=Picea glauca GN=rpo PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 63/117 (53.85%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 107 DSSVRTHYRLLKFHSSK--KSISNV----HMSDKMEKSETFSFGVFLLEFMEERGLVMIK 166
           DS V +   + +F SS   K +SN+    HM D++ K +  SF   L          + K
Sbjct: 225 DSFVESGLLMPRFLSSMNIKDVSNLLREFHMKDEVIK-KLCSFSELLR--------TLSK 284

Query: 167 TIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFAD 218
            IQRSRYE LI+ LA+ YDGY F LPAFLDFRGRIYR G+LHFHE DLARSLIVFAD
Sbjct: 285 NIQRSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]

BLAST of CmaCh00G001470.1 vs. TrEMBL
Match: M7ZNX0_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_06156 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-17
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 73  SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 132

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 133 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 192

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKTIQRSRYER 176
                   S K +     + K EK +     +  G +LL+FM ER ++ I T +    E 
Sbjct: 193 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHISTDRGVTKED 252

[Close]

BLAST of CmaCh00G001470.1 vs. TrEMBL
Match: Q332P2_WHEAT (Orf349 protein OS=Triticum aestivum GN=orf349 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKMQCHYDIGKYLLQFMIERNVLHIST 272

[Close]

BLAST of CmaCh00G001470.1 vs. TrEMBL
Match: B6VJT2_VITVI (DNA-directed RNA polymerase OS=Vitis vinifera GN=RNA_pol PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 62/171 (36.26%), Postives = 101/171 (59.06%), Query Frame = 1


Query: 5   KSKFPLSKIELRQLQQKIEDDSMKFDE-SSIYNVVPNFIKILIQKDKLSAKDYIIEKLAD 64
           K K   ++ EL  +Q  IED + K+D+  +IY + P+ IKI+I KD+L+AK+Y+ +    
Sbjct: 104 KDKDSFTEEELISIQTSIEDATFKYDDIKNIYQLTPDLIKIIISKDELTAKEYLKKCKLT 163

Query: 65  DDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESM--VRAASLINQLDSSVRTHYRLLKFHS 124
            +D+  LE F QYTLE +II+V G++FN  + +  VR ++LI  LD+ VR+  +LLK ++
Sbjct: 164 KNDLLTLEYFDQYTLEAIIIYVFGVLFNCIQELPAVRVSTLIEHLDTYVRSQAKLLKGYT 223

Query: 125 SKKSISNVH------------------MSDKMEKSETFSFGVFLLEFMEER 155
           S++  S  H                   +DKM+ +  ++FG FL+EF+  R
Sbjct: 224 SEERPSTKHEINSDDTSSNVKAEENEMANDKMQNN--YAFGAFLVEFLVNR 272

[Close]

BLAST of CmaCh00G001470.1 vs. TrEMBL
Match: W5XJM2_TRITD (Orf349 OS=Triticum turgidum subsp. durum PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

[Close]

BLAST of CmaCh00G001470.1 vs. NCBI nr
Match: gi|973607413|gb|KUM50494.1| (RNA polymerase (mitochondrion) [Picea glauca])

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 63/117 (53.85%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 107 DSSVRTHYRLLKFHSSK--KSISNV----HMSDKMEKSETFSFGVFLLEFMEERGLVMIK 166
           DS V +   + +F SS   K +SN+    HM D++ K +  SF   L          + K
Sbjct: 225 DSFVESGLLMPRFLSSMNIKDVSNLLREFHMKDEVIK-KLCSFSELLR--------TLSK 284

Query: 167 TIQRSRYERLILNLARDYDGYKFCLPAFLDFRGRIYRCGILHFHECDLARSLIVFAD 218
            IQRSRYE LI+ LA+ YDGY F LPAFLDFRGRIYR G+LHFHE DLARSLIVFAD
Sbjct: 285 NIQRSRYENLIMKLAQAYDGYHFDLPAFLDFRGRIYRSGVLHFHERDLARSLIVFAD 332

[Close]

BLAST of CmaCh00G001470.1 vs. NCBI nr
Match: gi|474308422|gb|EMS61822.1| (hypothetical protein TRIUR3_06156 [Triticum urartu])

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 73  SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 132

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 133 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 192

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKTIQRSRYER 176
                   S K +     + K EK +     +  G +LL+FM ER ++ I T +    E 
Sbjct: 193 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHISTDRGVTKED 252

[Close]

BLAST of CmaCh00G001470.1 vs. NCBI nr
Match: gi|578888294|gb|AHI16397.1| (orf349 (mitochondrion) [Triticum turgidum subsp. durum])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

[Close]

BLAST of CmaCh00G001470.1 vs. NCBI nr
Match: gi|224365624|ref|YP_002608352.1| (DNA-dependent RNA polymerase [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 62/171 (36.26%), Postives = 101/171 (59.06%), Query Frame = 1


Query: 5   KSKFPLSKIELRQLQQKIEDDSMKFDE-SSIYNVVPNFIKILIQKDKLSAKDYIIEKLAD 64
           K K   ++ EL  +Q  IED + K+D+  +IY + P+ IKI+I KD+L+AK+Y+ +    
Sbjct: 104 KDKDSFTEEELISIQTSIEDATFKYDDIKNIYQLTPDLIKIIISKDELTAKEYLKKCKLT 163

Query: 65  DDDIKMLEEFGQYTLEVLIIHVLGIVFNTYESM--VRAASLINQLDSSVRTHYRLLKFHS 124
            +D+  LE F QYTLE +II+V G++FN  + +  VR ++LI  LD+ VR+  +LLK ++
Sbjct: 164 KNDLLTLEYFDQYTLEAIIIYVFGVLFNCIQELPAVRVSTLIEHLDTYVRSQAKLLKGYT 223

Query: 125 SKKSISNVH------------------MSDKMEKSETFSFGVFLLEFMEER 155
           S++  S  H                   +DKM+ +  ++FG FL+EF+  R
Sbjct: 224 SEERPSTKHEINSDDTSSNVKAEENEMANDKMQNN--YAFGAFLVEFLVNR 272

[Close]

BLAST of CmaCh00G001470.1 vs. NCBI nr
Match: gi|578888264|gb|AHI16368.1| (orf349 (mitochondrion) [Triticum turgidum subsp. durum])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 11  SKIELRQLQQKIEDDSMKFDESSIYNVVPNFIKILIQKDKLSAKDYIIEKLADDDDIKML 70
           S  EL  LQ +I + +MKFDE +++ V PN +K LI KD+ +AK Y+  K      + ML
Sbjct: 103 SDTELIDLQNQIANCTMKFDEDNLFKVTPNIVKFLINKDQPNAKQYL--KGCLPSSLPML 162

Query: 71  EEFGQYTLEVLIIHVLGIVFNTYE--SMVRAASLINQLDSSVRTHYRLLKFHS------- 130
           + FG YTLE ++IHVLG+VFNT +  S V+AA  I+QL+S+VR   R L++ +       
Sbjct: 163 KMFGIYTLEAIMIHVLGLVFNTLQESSAVKAARFIDQLNSTVREQARFLQYKAPGSGKVE 222

Query: 131 --------SKKSISNVHMSDKMEKSET----FSFGVFLLEFMEERGLVMIKT 162
                   S K +     + K EK +     +  G +LL+FM ER ++ I T
Sbjct: 223 AVLTSKVESVKDVVQPKGASKKEKKKKIQCHYDIGKYLLQFMIERNVLHIST 272

The following BLAST results are available for this feature:

BLAST of CmaCh00G001470.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YM23_MAIZE	2.6e-12	39.42	Uncharacterized 33.9 kDa protein in mitochondrial linear 2.3 KB plasmid OS=Zea m...	[more]
RPOP_MAIZE	7.0e-10	32.46	Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1	[more]

BLAST of CmaCh00G001470.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A101M3N5_PICGL	3.7e-18	53.85	RNA polymerase OS=Picea glauca GN=rpo PE=4 SV=1	[more]
M7ZNX0_TRIUA	9.1e-17	37.10	Uncharacterized protein OS=Triticum urartu GN=TRIUR3_06156 PE=4 SV=1	[more]
Q332P2_WHEAT	1.6e-16	38.37	Orf349 protein OS=Triticum aestivum GN=orf349 PE=4 SV=1	[more]
B6VJT2_VITVI	1.6e-16	36.26	DNA-directed RNA polymerase OS=Vitis vinifera GN=RNA_pol PE=3 SV=1	[more]
W5XJM2_TRITD	1.6e-16	38.37	Orf349 OS=Triticum turgidum subsp. durum PE=4 SV=1	[more]

BLAST of CmaCh00G001470.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh00G001470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|973607413\|gb\|KUM50494.1\|	5.3e-18	53.85	RNA polymerase (mitochondrion) [Picea glauca]	[more]
gi\|474308422\|gb\|EMS61822.1\|	1.3e-16	37.10	hypothetical protein TRIUR3_06156 [Triticum urartu]	[more]
gi\|578888294\|gb\|AHI16397.1\|	2.2e-16	38.37	orf349 (mitochondrion) [Triticum turgidum subsp. durum]	[more]
gi\|224365624\|ref\|YP_002608352.1\|	2.2e-16	36.26	DNA-dependent RNA polymerase [Vitis vinifera]	[more]
gi\|578888264\|gb\|AHI16368.1\|	2.2e-16	38.37	orf349 (mitochondrion) [Triticum turgidum subsp. durum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G001470	CmaCh00G001470	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001470.1	CmaCh00G001470.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001470.1.exon.1	CmaCh00G001470.1.exon.1	exon
CmaCh00G001470.1.exon.2	CmaCh00G001470.1.exon.2	exon
CmaCh00G001470.1.exon.3	CmaCh00G001470.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001470.1.CDS.1	CmaCh00G001470.1.CDS.1	CDS
CmaCh00G001470.1.CDS.2	CmaCh00G001470.1.CDS.2	CDS
CmaCh00G001470.1.CDS.3	CmaCh00G001470.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 10..223 score: 6.23